Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010041E06.5 |
| Conread position: | 22-482 |
| Cow position: | chr16:49258814-49258355 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 303 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 191, 52 |
| Conread position: | 23-173 |
| Cow position: | chr16:14439860-14440011 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 80, 0 |
| Conread position: | 23-322 |
| Cow position: | chr16:25184128-25184430 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 86, 161 |
| Conread position: | 23-322 |
| Cow position: | chr16:32933629-32933927 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 6, 82 |
| Conread position: | 24-322 |
| Cow position: | chr16:15747973-15748248 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 75, 109 |
| Conread position: | 24-328 |
| Cow position: | chr16:5646869-5647164 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 85, 23 |
| Conread position: | 24-347 |
| Cow position: | chr16:27716249-27715943 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 223 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 181, 70 |
| Conread position: | 24-477 |
| Cow position: | chr16:31718574-31718124 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 36 |
| Conread position: | 24-505 |
| Cow position: | chr16:13651709-13651211 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 169 |
| Conread position: | 25-173 |
| Cow position: | chr16:47779353-47779502 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 128 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 25-174 |
| Cow position: | chr16:15803455-15803603 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 25-190 |
| Cow position: | chr16:36234587-36234428 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 25-294 |
| Cow position: | chr16:332736-333011 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 25-294 |
| Cow position: | chr16:333702-333978 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 32, 107 |
| Conread position: | 25-421 |
| Cow position: | chr16:40936114-40936508 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 149 |
| Conread position: | 26-323 |
| Cow position: | chr16:5886516-5886811 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 210 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 182, 146 |
| Conread position: | 27-322 |
| Cow position: | chr16:42052534-42052250 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 178, 51 |
| Conread position: | 32-322 |
| Cow position: | chr16:42106691-42106971 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 182, 21 |
| Conread position: | 35-451 |
| Cow position: | chr16:24058275-24057841 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 303 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 76, 112 |
| Conread position: | 37-439 |
| Cow position: | chr16:15507601-15507988 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 278 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 72, 90 |
| Conread position: | 48-173 |
| Cow position: | chr16:26334164-26334285 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 55, 74 |
| Conread position: | 73-279 |
| Cow position: | chr16:16897185-16897393 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 36, 160 |
| Conread position: | 76-319 |
| Cow position: | chr16:55060896-55060652 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 168 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 116-495 |
| Cow position: | chr16:29980351-29980724 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 38 |
| Conread position: | 219-516 |
| Cow position: | chr16:20753984-20753687 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 111, 70 |
| Conread position: | 326-484 |
| Cow position: | chr16:25151747-25151907 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 66, 24 |
| Conread position: | 326-499 |
| Cow position: | chr16:9928030-9928206 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 326-505 |
| Cow position: | chr16:14421320-14421500 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 63, 75 |
| Conread position: | 326-506 |
| Cow position: | chr16:47779664-47779847 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 326-510 |
| Cow position: | chr16:15803759-15803941 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 146 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 73, 22 |
| Conread position: | 326-510 |
| Cow position: | chr16:32933956-32934143 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 336-513 |
| Cow position: | chr16:5647198-5647377 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 175 |
| Conread position: | 493-1168 |
| Cow position: | chr16:27715704-27715035 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 98 |
| Conread position: | 495-711 |
| Cow position: | chr16:52817446-52817230 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 76, 94 |
| Conread position: | 498-702 |
| Cow position: | chr16:15803999-15804206 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 151 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 507-738 |
| Cow position: | chr16:29980916-29981150 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 91, 80 |
| Conread position: | 995-1196 |
| Cow position: | chr16:52816962-52816753 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 25, 80 |
Show alignments to all cow chromosomes.