Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010041E06.5 |
| Conread position: | 15-496 |
| Cow position: | chr3:52866399-52865908 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 319 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 177, 124 |
| Conread position: | 23-308 |
| Cow position: | chr3:39325121-39325400 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 117 |
| Conread position: | 23-313 |
| Cow position: | chr3:3978678-3978965 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 182, 73 |
| Conread position: | 23-499 |
| Cow position: | chr3:64359934-64359443 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 322 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 91, 19 |
| Conread position: | 23-512 |
| Cow position: | chr3:2855583-2855077 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 326 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 171, 59 |
| Conread position: | 24-153 |
| Cow position: | chr3:32844086-32843961 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 24-174 |
| Cow position: | chr3:77441489-77441639 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 85, 125 |
| Conread position: | 24-175 |
| Cow position: | chr3:34897070-34896918 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 118 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 24-241 |
| Cow position: | chr3:52688882-52689101 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 44, 147 |
| Conread position: | 24-322 |
| Cow position: | chr3:54344036-54343723 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 134, 0 |
| Conread position: | 24-331 |
| Cow position: | chr3:27880519-27880210 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 78, 149 |
| Conread position: | 24-495 |
| Cow position: | chr3:60211831-60211338 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 146 |
| Conread position: | 25-173 |
| Cow position: | chr3:25681818-25681667 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 25-323 |
| Cow position: | chr3:6879803-6879507 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 214 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 167, 77 |
| Conread position: | 25-323 |
| Cow position: | chr3:26947089-26947378 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 58, 133 |
| Conread position: | 25-323 |
| Cow position: | chr3:27631806-27632108 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 25-328 |
| Cow position: | chr3:30927952-30928252 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 85, 39 |
| Conread position: | 26-323 |
| Cow position: | chr3:52860244-52860535 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 85, 125 |
| Conread position: | 27-311 |
| Cow position: | chr3:66116739-66116470 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 28-328 |
| Cow position: | chr3:80869952-80870241 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 182, 63 |
| Conread position: | 30-174 |
| Cow position: | chr3:24594084-24593942 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 32-174 |
| Cow position: | chr3:27907058-27906918 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 57, 93 |
| Conread position: | 32-322 |
| Cow position: | chr3:83701833-83701545 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 77, 141 |
| Conread position: | 37-343 |
| Cow position: | chr3:61275767-61276072 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 214 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 110, 49 |
| Conread position: | 40-328 |
| Cow position: | chr3:2123986-2124276 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 47, 104 |
| Conread position: | 43-510 |
| Cow position: | chr3:34095499-34095031 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 287, 129 |
| Conread position: | 77-323 |
| Cow position: | chr3:56706667-56706417 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 48, 36 |
| Conread position: | 83-327 |
| Cow position: | chr3:19694451-19694219 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 169 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 20, 31 |
| Conread position: | 92-323 |
| Cow position: | chr3:32816573-32816799 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 116, 48 |
| Conread position: | 323-505 |
| Cow position: | chr3:6879482-6879299 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 76, 162 |
| Conread position: | 326-468 |
| Cow position: | chr3:27906776-27906631 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 326-510 |
| Cow position: | chr3:26947406-26947591 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 73, 9 |
| Conread position: | 327-506 |
| Cow position: | chr3:54343694-54343514 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 335-509 |
| Cow position: | chr3:14586805-14586982 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 361-503 |
| Cow position: | chr3:83701458-83701314 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 38, 59 |
| Conread position: | 493-738 |
| Cow position: | chr3:54343457-54343206 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 63, 70 |
Show alignments to all cow chromosomes.