Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010041E06.5 |
| Conread position: | 17-258 |
| Cow position: | chr5:14878968-14878727 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 177 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 86, 156 |
| Conread position: | 17-329 |
| Cow position: | chr5:7371562-7371252 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 92, 156 |
| Conread position: | 20-168 |
| Cow position: | chr5:855507-855358 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 89, 106 |
| Conread position: | 21-506 |
| Cow position: | chr5:57975759-57976258 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 211, 149 |
| Conread position: | 22-319 |
| Cow position: | chr5:9688723-9688426 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 77, 122 |
| Conread position: | 24-142 |
| Cow position: | chr5:35278745-35278863 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-172 |
| Cow position: | chr5:29125098-29124951 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 85, 36 |
| Conread position: | 24-174 |
| Cow position: | chr5:61564307-61564457 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-319 |
| Cow position: | chr5:29439372-29439086 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 82, 46 |
| Conread position: | 24-321 |
| Cow position: | chr5:24149491-24149791 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 213 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 78, 140 |
| Conread position: | 24-322 |
| Cow position: | chr5:31996669-31996963 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 85, 12 |
| Conread position: | 24-322 |
| Cow position: | chr5:51950518-51950811 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 181, 85 |
| Conread position: | 24-328 |
| Cow position: | chr5:27684590-27684271 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 85, 0 |
| Conread position: | 24-329 |
| Cow position: | chr5:25002740-25002429 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 66, 153 |
| Conread position: | 24-478 |
| Cow position: | chr5:27486328-27486799 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 30 |
| Conread position: | 24-506 |
| Cow position: | chr5:52432077-52432557 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 29 |
| Conread position: | 24-510 |
| Cow position: | chr5:50158627-50159127 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 7 |
| Conread position: | 25-323 |
| Cow position: | chr5:13424031-13424319 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 31, 26 |
| Conread position: | 25-327 |
| Cow position: | chr5:46610144-46609827 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 28, 22 |
| Conread position: | 25-328 |
| Cow position: | chr5:27337671-27337958 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 289, 20 |
| Conread position: | 25-328 |
| Cow position: | chr5:39248572-39248274 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 166, 8 |
| Conread position: | 25-328 |
| Cow position: | chr5:75145106-75145407 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 41 |
| Conread position: | 25-336 |
| Cow position: | chr5:27062387-27062083 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 175, 26 |
| Conread position: | 35-307 |
| Cow position: | chr5:7504785-7504512 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 183 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 74, 138 |
| Conread position: | 35-323 |
| Cow position: | chr5:27957776-27958060 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 74, 43 |
| Conread position: | 37-496 |
| Cow position: | chr5:57906669-57907127 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 313 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 66, 136 |
| Conread position: | 47-323 |
| Cow position: | chr5:26071608-26071332 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 52, 77 |
| Conread position: | 47-346 |
| Cow position: | chr5:57929290-57929003 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 55-309 |
| Cow position: | chr5:4351613-4351868 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 54, 110 |
| Conread position: | 65-328 |
| Cow position: | chr5:658573-658834 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 44, 52 |
| Conread position: | 324-510 |
| Cow position: | chr5:51950837-51951025 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 63, 78 |
| Conread position: | 326-468 |
| Cow position: | chr5:39248251-39248106 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 326-510 |
| Cow position: | chr5:13424347-13424535 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 326-510 |
| Cow position: | chr5:27062068-27061881 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 65, 76 |
| Conread position: | 327-491 |
| Cow position: | chr5:27337982-27338150 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 327-494 |
| Cow position: | chr5:27684247-27684076 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 65, 75 |
| Conread position: | 327-504 |
| Cow position: | chr5:26071302-26071122 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 327-506 |
| Cow position: | chr5:14878627-14878446 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 72, 90 |
| Conread position: | 327-510 |
| Cow position: | chr5:29439056-29438873 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 148 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 64, 74 |
| Conread position: | 329-496 |
| Cow position: | chr5:24149825-24149994 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 70, 80 |
| Conread position: | 335-505 |
| Cow position: | chr5:7503963-7503789 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 335-510 |
| Cow position: | chr5:61564938-61565114 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 64, 135 |
| Conread position: | 356-510 |
| Cow position: | chr5:35278863-35279020 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 502-688 |
| Cow position: | chr5:29438812-29438630 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 97, 61 |
Show alignments to all cow chromosomes.