Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-678
Cow position:
Alignm length: 679
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 656, 19

Conread position: 2-204
Cow position:
Alignm length: 204
Alignm identity: 150
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 41

Conread position: 2-367
Cow position:
Alignm length: 368
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 302

Conread position: 2-492
Cow position:
Alignm length: 494
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 47

Conread position: 2-496
Cow position:
Alignm length: 496
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 18

Conread position: 2-604
Cow position:
Alignm length: 606
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 124

Conread position: 2-684
Cow position:
Alignm length: 691
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 24

Conread position: 3-281
Cow position:
Alignm length: 281
Alignm identity: 188
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 15, 29

Conread position: 5-670
Cow position:
Alignm length: 678
Alignm identity: 433
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 66, 53

Conread position: 5-679
Cow position:
Alignm length: 679
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 43

Conread position: 6-394
Cow position:
Alignm length: 391
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 201

Conread position: 6-667
Cow position:
Alignm length: 670
Alignm identity: 432
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 12, 54

Conread position: 6-678
Cow position:
Alignm length: 673
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 6-683
Cow position:
Alignm length: 694
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 11

Conread position: 7-528
Cow position:
Alignm length: 524
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 113

Conread position: 7-684
Cow position:
Alignm length: 681
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 53

Conread position: 7-684
Cow position:
Alignm length: 679
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 23

Conread position: 11-575
Cow position:
Alignm length: 567
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 122

Conread position: 13-215
Cow position:
Alignm length: 205
Alignm identity: 142
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 5, 18

Conread position: 13-378
Cow position:
Alignm length: 367
Alignm identity: 259
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 5, 55

Conread position: 13-474
Cow position:
Alignm length: 464
Alignm identity: 301
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 5, 103

Conread position: 13-678
Cow position:
Alignm length: 668
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 120

Conread position: 13-678
Cow position:
Alignm length: 667
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 84

Conread position: 13-678
Cow position:
Alignm length: 668
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 113

Conread position: 13-678
Cow position:
Alignm length: 670
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 13-679
Cow position:
Alignm length: 670
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 575, 297

Conread position: 13-684
Cow position:
Alignm length: 681
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 17

Conread position: 13-684
Cow position:
Alignm length: 679
Alignm identity: 537
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 17-281
Cow position:
Alignm length: 265
Alignm identity: 173
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 39, 0

Conread position: 18-255
Cow position:
Alignm length: 239
Alignm identity: 140
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 25, 29

Conread position: 18-335
Cow position:
Alignm length: 319
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 0

Conread position: 18-397
Cow position:
Alignm length: 380
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 18-471
Cow position:
Alignm length: 454
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-489
Cow position:
Alignm length: 490
Alignm identity: 316
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 102, 46

Conread position: 18-644
Cow position:
Alignm length: 632
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 289, 120

Conread position: 18-660
Cow position:
Alignm length: 643
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 257, 0

Conread position: 18-665
Cow position:
Alignm length: 648
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 0

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 29

Conread position: 18-678
Cow position:
Alignm length: 669
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 192

Conread position: 18-678
Cow position:
Alignm length: 664
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 326, 88

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 15

Conread position: 18-678
Cow position:
Alignm length: 665
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 186

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 39

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 104

Conread position: 18-679
Cow position:
Alignm length: 677
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 225

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 106

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 0

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 336

Conread position: 18-684
Cow position:
Alignm length: 667
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 0

Conread position: 18-684
Cow position:
Alignm length: 673
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 338, 243

Conread position: 19-659
Cow position:
Alignm length: 652
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 7

Conread position: 19-679
Cow position:
Alignm length: 662
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 656, 146

Conread position: 21-553
Cow position:
Alignm length: 533
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 0

Conread position: 21-678
Cow position:
Alignm length: 658
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 0

Conread position: 21-678
Cow position:
Alignm length: 660
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 190

Conread position: 22-678
Cow position:
Alignm length: 658
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 653, 195

Conread position: 26-684
Cow position:
Alignm length: 673
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 107

Conread position: 29-474
Cow position:
Alignm length: 455
Alignm identity: 275
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 22, 11

Conread position: 30-527
Cow position:
Alignm length: 511
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 31

Conread position: 30-566
Cow position:
Alignm length: 537
Alignm identity: 351
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 45, 0

Conread position: 30-655
Cow position:
Alignm length: 632
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 197

Conread position: 30-657
Cow position:
Alignm length: 638
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 12

Conread position: 30-679
Cow position:
Alignm length: 652
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 493, 253

Conread position: 30-684
Cow position:
Alignm length: 657
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 446

Conread position: 32-339
Cow position:
Alignm length: 309
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 44

Conread position: 35-679
Cow position:
Alignm length: 646
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 640, 255

Conread position: 41-609
Cow position:
Alignm length: 569
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 43-666
Cow position:
Alignm length: 646
Alignm identity: 407
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 113, 141

Conread position: 49-415
Cow position:
Alignm length: 373
Alignm identity: 252
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 69, 54

Conread position: 51-678
Cow position:
Alignm length: 629
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 486

Conread position: 66-684
Cow position:
Alignm length: 621
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 458, 15

Conread position: 72-677
Cow position:
Alignm length: 620
Alignm identity: 376
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 198, 66

Conread position: 75-586
Cow position:
Alignm length: 512
Alignm identity: 346
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 34, 0

Conread position: 78-652
Cow position:
Alignm length: 581
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 84-259
Cow position:
Alignm length: 177
Alignm identity: 134
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 38, 118

Conread position: 94-678
Cow position:
Alignm length: 592
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 9

Conread position: 97-675
Cow position:
Alignm length: 600
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 102

Conread position: 102-430
Cow position:
Alignm length: 332
Alignm identity: 208
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 173, 32

Conread position: 105-632
Cow position:
Alignm length: 531
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 36

Conread position: 106-664
Cow position:
Alignm length: 562
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 82

Conread position: 113-684
Cow position:
Alignm length: 581
Alignm identity: 350
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 15, 54

Conread position: 115-667
Cow position:
Alignm length: 567
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 32

Conread position: 125-683
Cow position:
Alignm length: 565
Alignm identity: 350
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 169, 84

Conread position: 126-678
Cow position:
Alignm length: 555
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 25

Conread position: 131-678
Cow position:
Alignm length: 560
Alignm identity: 346
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 281, 75

Conread position: 132-678
Cow position:
Alignm length: 557
Alignm identity: 349
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 313, 77

Conread position: 146-681
Cow position:
Alignm length: 538
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 192

Conread position: 159-678
Cow position:
Alignm length: 533
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 50

Conread position: 159-684
Cow position:
Alignm length: 541
Alignm identity: 351
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 248, 60

Conread position: 165-397
Cow position:
Alignm length: 237
Alignm identity: 165
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 13, 53

Conread position: 174-633
Cow position:
Alignm length: 461
Alignm identity: 300
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 132, 43

Conread position: 180-422
Cow position:
Alignm length: 243
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 189-678
Cow position:
Alignm length: 493
Alignm identity: 327
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 409, 145

Conread position: 199-662
Cow position:
Alignm length: 473
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 118

Conread position: 200-684
Cow position:
Alignm length: 494
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 19

Conread position: 202-638
Cow position:
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 182

Conread position: 203-684
Cow position:
Alignm length: 482
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 215-684
Cow position:
Alignm length: 472
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 311, 69

Conread position: 228-678
Cow position:
Alignm length: 455
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 315, 0

Conread position: 229-525
Cow position:
Alignm length: 297
Alignm identity: 211
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 65, 0

Conread position: 241-682
Cow position:
Alignm length: 442
Alignm identity: 291
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 0

Conread position: 241-683
Cow position:
Alignm length: 445
Alignm identity: 282
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 84, 33

Conread position: 249-679
Cow position:
Alignm length: 433
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 349

Conread position: 256-681
Cow position:
Alignm length: 426
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 0

Conread position: 258-665
Cow position:
Alignm length: 410
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 164

Conread position: 283-679
Cow position:
Alignm length: 398
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 0

Conread position: 298-681
Cow position:
Alignm length: 385
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 229, 14

Conread position: 311-678
Cow position:
Alignm length: 370
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 32

Conread position: 315-600
Cow position:
Alignm length: 291
Alignm identity: 190
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 132, 190

Conread position: 324-547
Cow position:
Alignm length: 229
Alignm identity: 176
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 78, 39

Conread position: 326-672
Cow position:
Alignm length: 349
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 161

Conread position: 329-682
Cow position:
Alignm length: 357
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 79

Conread position: 330-684
Cow position:
Alignm length: 355
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 331-667
Cow position:
Alignm length: 346
Alignm identity: 233
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 33

Conread position: 348-547
Cow position:
Alignm length: 200
Alignm identity: 155
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 63, 0

Conread position: 348-604
Cow position:
Alignm length: 258
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 84

Conread position: 352-478
Cow position:
Alignm length: 127
Alignm identity: 105
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 353-666
Cow position:
Alignm length: 323
Alignm identity: 203
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 10, 45

Conread position: 358-683
Cow position:
Alignm length: 327
Alignm identity: 214
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 74, 162

Conread position: 361-670
Cow position:
Alignm length: 311
Alignm identity: 201
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 176, 11

Conread position: 362-682
Cow position:
Alignm length: 321
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 372-679
Cow position:
Alignm length: 321
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 93

Conread position: 378-677
Cow position:
Alignm length: 301
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 16

Conread position: 382-678
Cow position:
Alignm length: 298
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 141

Conread position: 384-622
Cow position:
Alignm length: 243
Alignm identity: 165
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 10, 107

Conread position: 385-684
Cow position:
Alignm length: 300
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 0

Conread position: 386-678
Cow position:
Alignm length: 295
Alignm identity: 205
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 18, 128

Conread position: 396-595
Cow position:
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 126, 134

Conread position: 411-670
Cow position:
Alignm length: 264
Alignm identity: 187
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 13, 239

Conread position: 412-684
Cow position:
Alignm length: 278
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 190

Conread position: 432-678
Cow position:
Alignm length: 251
Alignm identity: 165
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 73, 128

Conread position: 456-684
Cow position:
Alignm length: 229
Alignm identity: 185
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 460-678
Cow position:
Alignm length: 219
Alignm identity: 155
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 128, 0

Conread position: 460-683
Cow position:
Alignm length: 224
Alignm identity: 155
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 64, 0

Conread position: 461-678
Cow position:
Alignm length: 218
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 0

Conread position: 470-678
Cow position:
Alignm length: 210
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 53

Conread position: 472-678
Cow position:
Alignm length: 210
Alignm identity: 165
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 156, 181

Conread position: 472-682
Cow position:
Alignm length: 212
Alignm identity: 156
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 150, 169

Conread position: 517-679
Cow position:
Alignm length: 164
Alignm identity: 128
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 158, 140

Conread position: 518-684
Cow position:
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 14, 0

Conread position: 529-667
Cow position:
Alignm length: 139
Alignm identity: 115
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 550-678
Cow position:
Alignm length: 129
Alignm identity: 112
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 550-684
Cow position:
Alignm length: 135
Alignm identity: 113
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 110, 0

Conread position: 567-675
Cow position:
Alignm length: 109
Alignm identity: 94
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 578-678
Cow position:
Alignm length: 101
Alignm identity: 87
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.