Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010062G02.5 |
| Conread position: | 1-174 |
| Cow position: | chr12:21883609-21883779 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 2-627 |
| Cow position: | chr12:1137180-1137778 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 3-658 |
| Cow position: | chr12:14693250-14693859 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 419 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 330, 16 |
| Conread position: | 4-569 |
| Cow position: | chr12:16326320-16326845 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 365 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 15, 96 |
| Conread position: | 6-589 |
| Cow position: | chr12:10483633-10484198 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 13 |
| Conread position: | 6-678 |
| Cow position: | chr12:21426290-21426951 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 669, 11 |
| Conread position: | 7-433 |
| Cow position: | chr12:1868051-1868471 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 279 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 8, 40 |
| Conread position: | 11-209 |
| Cow position: | chr12:26947678-26947467 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 175 |
| Conread position: | 11-678 |
| Cow position: | chr12:8310773-8311437 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 408 |
| Conread position: | 13-678 |
| Cow position: | chr12:2389-3055 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 521 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 649 |
| Conread position: | 13-678 |
| Cow position: | chr12:21901544-21902195 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 134 |
| Conread position: | 13-678 |
| Cow position: | chr12:21941370-21942024 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 191 |
| Conread position: | 17-410 |
| Cow position: | chr12:48404646-48405032 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 17-640 |
| Cow position: | chr12:15951657-15951045 (view UCSC Genome Browser custom track) |
| Alignm length: | 630 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 396, 105 |
| Conread position: | 18-280 |
| Cow position: | chr12:2839989-2839737 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 62, 0 |
| Conread position: | 18-388 |
| Cow position: | chr12:22026355-22026718 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 235, 95 |
| Conread position: | 18-591 |
| Cow position: | chr12:26141410-26141983 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-595 |
| Cow position: | chr12:21207294-21207867 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 18-674 |
| Cow position: | chr12:20998524-20997881 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 292 |
| Conread position: | 18-678 |
| Cow position: | chr12:3360510-3361160 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 18-678 |
| Cow position: | chr12:14663013-14662377 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 332, 95 |
| Conread position: | 18-678 |
| Cow position: | chr12:37558156-37558812 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 197 |
| Conread position: | 18-679 |
| Cow position: | chr12:6407045-6406393 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 12 |
| Conread position: | 18-679 |
| Cow position: | chr12:8678522-8677863 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 570, 191 |
| Conread position: | 18-679 |
| Cow position: | chr12:11097838-11098500 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 553, 590 |
| Conread position: | 18-679 |
| Cow position: | chr12:22206148-22205490 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 180 |
| Conread position: | 18-679 |
| Cow position: | chr12:25101467-25100803 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 196 |
| Conread position: | 18-684 |
| Cow position: | chr12:252460-251794 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 18-684 |
| Cow position: | chr12:27933349-27932682 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 0 |
| Conread position: | 22-636 |
| Cow position: | chr12:17975147-17975751 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 385 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 100, 202 |
| Conread position: | 26-662 |
| Cow position: | chr12:17128708-17128082 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 66 |
| Conread position: | 29-679 |
| Cow position: | chr12:28766408-28765761 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 116 |
| Conread position: | 30-667 |
| Cow position: | chr12:16293532-16294175 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 30-678 |
| Cow position: | chr12:2282157-2282802 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 98, 45 |
| Conread position: | 30-678 |
| Cow position: | chr12:22332228-22332880 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 33 |
| Conread position: | 30-678 |
| Cow position: | chr12:32653156-32653800 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 0 |
| Conread position: | 30-684 |
| Cow position: | chr12:1402102-1402753 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 493, 179 |
| Conread position: | 32-678 |
| Cow position: | chr12:43031765-43031129 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 33-367 |
| Cow position: | chr12:21197444-21197772 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 94 |
| Conread position: | 33-679 |
| Cow position: | chr12:42860203-42859569 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 380, 250 |
| Conread position: | 47-226 |
| Cow position: | chr12:42420784-42420604 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 60-678 |
| Cow position: | chr12:21255016-21254400 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 77-684 |
| Cow position: | chr12:21499782-21500364 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 45 |
| Conread position: | 101-678 |
| Cow position: | chr12:45261286-45261879 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 132 |
| Conread position: | 109-653 |
| Cow position: | chr12:16841427-16840899 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 337 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 200, 63 |
| Conread position: | 114-579 |
| Cow position: | chr12:347529-347986 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 309 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 213, 24 |
| Conread position: | 126-312 |
| Cow position: | chr12:601346-601164 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 154-583 |
| Cow position: | chr12:8982680-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 187-683 |
| Cow position: | chr12:21227683-21227189 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 22 |
| Conread position: | 199-368 |
| Cow position: | chr12:42420343-42420176 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 199-678 |
| Cow position: | chr12:26947202-26946734 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 13 |
| Conread position: | 249-684 |
| Cow position: | chr12:3632427-3632006 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 293 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 330, 121 |
| Conread position: | 297-683 |
| Cow position: | chr12:3503133-3503526 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 116, 73 |
| Conread position: | 326-660 |
| Cow position: | chr12:34854886-34854566 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 85, 26 |
| Conread position: | 329-678 |
| Cow position: | chr12:18500943-18501288 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 44 |
| Conread position: | 373-652 |
| Cow position: | chr12:2838903-2838625 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 0 |
| Conread position: | 376-558 |
| Cow position: | chr12:6494411-6494222 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 132 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 383-591 |
| Cow position: | chr12:48405232-48405441 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 399-678 |
| Cow position: | chr12:21197935-21198217 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 0 |
| Conread position: | 417-678 |
| Cow position: | chr12:33986157-33986418 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 466-590 |
| Cow position: | chr12:48211761-48211643 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 477-672 |
| Cow position: | chr12:5861209-5861403 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 79 |
| Conread position: | 483-678 |
| Cow position: | chr12:23240065-23240259 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 48, 41 |
| Conread position: | 564-678 |
| Cow position: | chr12:31544920-31545034 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 575-678 |
| Cow position: | chr12:4157530-4157633 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 91 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.