Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 2-521
Cow position:
Alignm length: 526
Alignm identity: 349
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 357, 17

Conread position: 3-421
Cow position:
Alignm length: 426
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 65

Conread position: 5-658
Cow position:
Alignm length: 658
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 282

Conread position: 6-154
Cow position:
Alignm length: 149
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 6-643
Cow position:
Alignm length: 651
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 53

Conread position: 6-656
Cow position:
Alignm length: 657
Alignm identity: 422
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 405, 13

Conread position: 6-660
Cow position:
Alignm length: 658
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 527

Conread position: 6-679
Cow position:
Alignm length: 678
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 418

Conread position: 8-678
Cow position:
Alignm length: 671
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 11-488
Cow position:
Alignm length: 480
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 11-678
Cow position:
Alignm length: 670
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 26

Conread position: 11-678
Cow position:
Alignm length: 680
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 216

Conread position: 11-678
Cow position:
Alignm length: 671
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 20

Conread position: 13-311
Cow position:
Alignm length: 302
Alignm identity: 173
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 5, 35

Conread position: 13-409
Cow position:
Alignm length: 399
Alignm identity: 260
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 5, 110

Conread position: 13-457
Cow position:
Alignm length: 446
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 119

Conread position: 13-591
Cow position:
Alignm length: 582
Alignm identity: 374
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 5, 69

Conread position: 13-664
Cow position:
Alignm length: 654
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 205

Conread position: 13-675
Cow position:
Alignm length: 665
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 19

Conread position: 13-678
Cow position:
Alignm length: 667
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 61

Conread position: 13-678
Cow position:
Alignm length: 671
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 215

Conread position: 13-678
Cow position:
Alignm length: 669
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 55

Conread position: 13-681
Cow position:
Alignm length: 673
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 18

Conread position: 17-318
Cow position:
Alignm length: 303
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 206

Conread position: 17-476
Cow position:
Alignm length: 466
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 96

Conread position: 17-681
Cow position:
Alignm length: 678
Alignm identity: 420
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 86, 31

Conread position: 17-684
Cow position:
Alignm length: 669
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 130

Conread position: 17-684
Cow position:
Alignm length: 688
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 49

Conread position: 17-684
Cow position:
Alignm length: 680
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 96

Conread position: 18-204
Cow position:
Alignm length: 188
Alignm identity: 140
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 25, 29

Conread position: 18-302
Cow position:
Alignm length: 285
Alignm identity: 169
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 18-354
Cow position:
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-373
Cow position:
Alignm length: 356
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 18-523
Cow position:
Alignm length: 506
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 0

Conread position: 18-678
Cow position:
Alignm length: 669
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 0

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 538, 95

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 77

Conread position: 18-678
Cow position:
Alignm length: 663
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 25

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 435, 0

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 339

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 48

Conread position: 18-679
Cow position:
Alignm length: 672
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 18-684
Cow position:
Alignm length: 668
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 20-678
Cow position:
Alignm length: 660
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 134

Conread position: 21-678
Cow position:
Alignm length: 659
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 654, 188

Conread position: 22-670
Cow position:
Alignm length: 650
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 320, 10

Conread position: 22-683
Cow position:
Alignm length: 664
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 100

Conread position: 30-171
Cow position:
Alignm length: 142
Alignm identity: 110
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 30-595
Cow position:
Alignm length: 566
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-678
Cow position:
Alignm length: 649
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 33-679
Cow position:
Alignm length: 649
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 491, 276

Conread position: 38-683
Cow position:
Alignm length: 663
Alignm identity: 416
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 76, 122

Conread position: 42-635
Cow position:
Alignm length: 595
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 460, 89

Conread position: 42-677
Cow position:
Alignm length: 640
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 99

Conread position: 49-682
Cow position:
Alignm length: 643
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 136

Conread position: 50-490
Cow position:
Alignm length: 444
Alignm identity: 277
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 240, 93

Conread position: 50-678
Cow position:
Alignm length: 632
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 286, 154

Conread position: 50-683
Cow position:
Alignm length: 637
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 63

Conread position: 52-678
Cow position:
Alignm length: 629
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 527, 109

Conread position: 60-381
Cow position:
Alignm length: 324
Alignm identity: 208
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 49, 90

Conread position: 60-653
Cow position:
Alignm length: 600
Alignm identity: 379
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 53, 111

Conread position: 75-679
Cow position:
Alignm length: 607
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 132

Conread position: 98-452
Cow position:
Alignm length: 364
Alignm identity: 227
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 125

Conread position: 100-616
Cow position:
Alignm length: 535
Alignm identity: 327
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 51, 15

Conread position: 101-328
Cow position:
Alignm length: 230
Alignm identity: 152
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 20, 123

Conread position: 106-639
Cow position:
Alignm length: 538
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 40

Conread position: 109-678
Cow position:
Alignm length: 579
Alignm identity: 372
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 24, 44

Conread position: 113-250
Cow position:
Alignm length: 138
Alignm identity: 101
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 117-683
Cow position:
Alignm length: 576
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 36

Conread position: 118-683
Cow position:
Alignm length: 567
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 117

Conread position: 121-267
Cow position:
Alignm length: 147
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 5, 0

Conread position: 124-577
Cow position:
Alignm length: 459
Alignm identity: 299
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 49, 11

Conread position: 126-378
Cow position:
Alignm length: 253
Alignm identity: 170
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 60, 0

Conread position: 146-678
Cow position:
Alignm length: 533
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 0

Conread position: 151-589
Cow position:
Alignm length: 441
Alignm identity: 275
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 228, 66

Conread position: 153-678
Cow position:
Alignm length: 527
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 30

Conread position: 176-678
Cow position:
Alignm length: 505
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 192-634
Cow position:
Alignm length: 443
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 200-620
Cow position:
Alignm length: 427
Alignm identity: 271
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 91, 35

Conread position: 205-542
Cow position:
Alignm length: 339
Alignm identity: 226
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 152, 14

Conread position: 205-678
Cow position:
Alignm length: 491
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 178

Conread position: 210-589
Cow position:
Alignm length: 384
Alignm identity: 253
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 80, 16

Conread position: 211-677
Cow position:
Alignm length: 475
Alignm identity: 302
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 145, 67

Conread position: 218-678
Cow position:
Alignm length: 463
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 105

Conread position: 259-493
Cow position:
Alignm length: 235
Alignm identity: 180
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 107, 0

Conread position: 274-610
Cow position:
Alignm length: 342
Alignm identity: 226
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 57, 15

Conread position: 280-684
Cow position:
Alignm length: 405
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 0

Conread position: 283-675
Cow position:
Alignm length: 404
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 26

Conread position: 316-682
Cow position:
Alignm length: 370
Alignm identity: 248
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 187, 51

Conread position: 320-683
Cow position:
Alignm length: 368
Alignm identity: 233
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 42, 17

Conread position: 341-679
Cow position:
Alignm length: 340
Alignm identity: 141
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 334, 0

Conread position: 345-547
Cow position:
Alignm length: 207
Alignm identity: 161
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 66, 158

Conread position: 347-669
Cow position:
Alignm length: 326
Alignm identity: 220
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 187, 101

Conread position: 350-656
Cow position:
Alignm length: 307
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 367-684
Cow position:
Alignm length: 319
Alignm identity: 217
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 290, 189

Conread position: 373-684
Cow position:
Alignm length: 318
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 11

Conread position: 391-643
Cow position:
Alignm length: 257
Alignm identity: 172
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 45, 169

Conread position: 399-670
Cow position:
Alignm length: 274
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 63

Conread position: 412-678
Cow position:
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 414-679
Cow position:
Alignm length: 267
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 261, 52

Conread position: 421-613
Cow position:
Alignm length: 202
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 134, 7

Conread position: 421-665
Cow position:
Alignm length: 249
Alignm identity: 176
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 143, 171

Conread position: 443-679
Cow position:
Alignm length: 238
Alignm identity: 157
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 85, 45

Conread position: 450-682
Cow position:
Alignm length: 235
Alignm identity: 168
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 109, 74

Conread position: 466-623
Cow position:
Alignm length: 158
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 471-678
Cow position:
Alignm length: 208
Alignm identity: 176
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 473-678
Cow position:
Alignm length: 207
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 501-682
Cow position:
Alignm length: 184
Alignm identity: 135
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 30, 58

Conread position: 509-683
Cow position:
Alignm length: 179
Alignm identity: 148
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 22, 92

Conread position: 518-678
Cow position:
Alignm length: 161
Alignm identity: 137
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 552-684
Cow position:
Alignm length: 133
Alignm identity: 110
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 112, 0

Conread position: 553-667
Cow position:
Alignm length: 116
Alignm identity: 92
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 55, 0

Conread position: 563-678
Cow position:
Alignm length: 116
Alignm identity: 94
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.