Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010062G02.5 |
| Conread position: | 2-684 |
| Cow position: | |
| Alignm length: | 687 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 115 |
| Conread position: | 6-392 |
| Cow position: | |
| Alignm length: | 387 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 6-611 |
| Cow position: | |
| Alignm length: | 611 |
| Alignm identity: | 375 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 12, 28 |
| Conread position: | 6-652 |
| Cow position: | |
| Alignm length: | 662 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 561 |
| Conread position: | 6-678 |
| Cow position: | |
| Alignm length: | 673 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 6-679 |
| Cow position: | |
| Alignm length: | 677 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 55 |
| Conread position: | 6-679 |
| Cow position: | |
| Alignm length: | 682 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 56 |
| Conread position: | 6-679 |
| Cow position: | |
| Alignm length: | 678 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 39 |
| Conread position: | 6-684 |
| Cow position: | |
| Alignm length: | 682 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 11 |
| Conread position: | 6-684 |
| Cow position: | |
| Alignm length: | 680 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 456, 14 |
| Conread position: | 7-284 |
| Cow position: | |
| Alignm length: | 282 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 88, 14 |
| Conread position: | 8-583 |
| Cow position: | |
| Alignm length: | 581 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 84 |
| Conread position: | 8-665 |
| Cow position: | |
| Alignm length: | 663 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 8-678 |
| Cow position: | |
| Alignm length: | 673 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 10 |
| Conread position: | 8-678 |
| Cow position: | |
| Alignm length: | 673 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 404, 13 |
| Conread position: | 10-678 |
| Cow position: | |
| Alignm length: | 682 |
| Alignm identity: | 519 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 328 |
| Conread position: | 11-678 |
| Cow position: | |
| Alignm length: | 675 |
| Alignm identity: | 522 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 11-678 |
| Cow position: | |
| Alignm length: | 672 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 33 |
| Conread position: | 13-252 |
| Cow position: | |
| Alignm length: | 241 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 193 |
| Conread position: | 13-450 |
| Cow position: | |
| Alignm length: | 442 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 79 |
| Conread position: | 13-578 |
| Cow position: | |
| Alignm length: | 573 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 125 |
| Conread position: | 13-678 |
| Cow position: | |
| Alignm length: | 675 |
| Alignm identity: | 398 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 262, 82 |
| Conread position: | 13-678 |
| Cow position: | |
| Alignm length: | 668 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 13-683 |
| Cow position: | |
| Alignm length: | 679 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 171 |
| Conread position: | 13-684 |
| Cow position: | |
| Alignm length: | 688 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 19 |
| Conread position: | 13-684 |
| Cow position: | |
| Alignm length: | 675 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 216 |
| Conread position: | 13-684 |
| Cow position: | |
| Alignm length: | 686 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 34 |
| Conread position: | 15-618 |
| Cow position: | |
| Alignm length: | 609 |
| Alignm identity: | 384 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 48, 11 |
| Conread position: | 17-303 |
| Cow position: | |
| Alignm length: | 287 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 17-354 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 17-437 |
| Cow position: | |
| Alignm length: | 421 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 17-643 |
| Cow position: | |
| Alignm length: | 654 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 325, 105 |
| Conread position: | 18-155 |
| Cow position: | |
| Alignm length: | 139 |
| Alignm identity: | 104 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 98, 114 |
| Conread position: | 18-189 |
| Cow position: | |
| Alignm length: | 172 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-218 |
| Cow position: | |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 6, 13 |
| Conread position: | 18-433 |
| Cow position: | |
| Alignm length: | 416 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 18-514 |
| Cow position: | |
| Alignm length: | 497 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 0 |
| Conread position: | 18-560 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-595 |
| Cow position: | |
| Alignm length: | 578 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-675 |
| Cow position: | |
| Alignm length: | 658 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 0 |
| Conread position: | 18-675 |
| Cow position: | |
| Alignm length: | 659 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 88 |
| Conread position: | 18-678 |
| Cow position: | |
| Alignm length: | 661 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 351, 0 |
| Conread position: | 18-678 |
| Cow position: | |
| Alignm length: | 662 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 77 |
| Conread position: | 18-678 |
| Cow position: | |
| Alignm length: | 662 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 247 |
| Conread position: | 18-678 |
| Cow position: | |
| Alignm length: | 662 |
| Alignm identity: | 508 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 188 |
| Conread position: | 18-678 |
| Cow position: | |
| Alignm length: | 662 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-678 |
| Cow position: | |
| Alignm length: | 667 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 630, 41 |
| Conread position: | 18-678 |
| Cow position: | |
| Alignm length: | 663 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-683 |
| Cow position: | |
| Alignm length: | 671 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 25 |
| Conread position: | 18-683 |
| Cow position: | |
| Alignm length: | 666 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 18-684 |
| Cow position: | |
| Alignm length: | 668 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 180 |
| Conread position: | 20-538 |
| Cow position: | |
| Alignm length: | 524 |
| Alignm identity: | 332 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 150, 65 |
| Conread position: | 20-679 |
| Cow position: | |
| Alignm length: | 661 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 655, 101 |
| Conread position: | 21-678 |
| Cow position: | |
| Alignm length: | 659 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 30-218 |
| Cow position: | |
| Alignm length: | 190 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 30-621 |
| Cow position: | |
| Alignm length: | 597 |
| Alignm identity: | 368 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 11 |
| Conread position: | 30-679 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 645, 66 |
| Conread position: | 30-679 |
| Cow position: | |
| Alignm length: | 651 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 645, 581 |
| Conread position: | 33-678 |
| Cow position: | |
| Alignm length: | 649 |
| Alignm identity: | 488 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 10 |
| Conread position: | 35-207 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 37-220 |
| Cow position: | |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 90, 170 |
| Conread position: | 46-678 |
| Cow position: | |
| Alignm length: | 644 |
| Alignm identity: | 504 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 188 |
| Conread position: | 48-410 |
| Cow position: | |
| Alignm length: | 364 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 89 |
| Conread position: | 50-409 |
| Cow position: | |
| Alignm length: | 361 |
| Alignm identity: | 247 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 349, 9 |
| Conread position: | 52-533 |
| Cow position: | |
| Alignm length: | 484 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 10, 25 |
| Conread position: | 52-678 |
| Cow position: | |
| Alignm length: | 627 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 58-679 |
| Cow position: | |
| Alignm length: | 628 |
| Alignm identity: | 458 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 27 |
| Conread position: | 61-373 |
| Cow position: | |
| Alignm length: | 313 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 66-678 |
| Cow position: | |
| Alignm length: | 619 |
| Alignm identity: | 461 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 72 |
| Conread position: | 75-644 |
| Cow position: | |
| Alignm length: | 572 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 38 |
| Conread position: | 103-669 |
| Cow position: | |
| Alignm length: | 567 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 105-684 |
| Cow position: | |
| Alignm length: | 606 |
| Alignm identity: | 384 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 25, 105 |
| Conread position: | 110-684 |
| Cow position: | |
| Alignm length: | 577 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 330, 103 |
| Conread position: | 113-683 |
| Cow position: | |
| Alignm length: | 578 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 9 |
| Conread position: | 121-674 |
| Cow position: | |
| Alignm length: | 555 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 114 |
| Conread position: | 121-678 |
| Cow position: | |
| Alignm length: | 561 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 155 |
| Conread position: | 132-670 |
| Cow position: | |
| Alignm length: | 550 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 114 |
| Conread position: | 147-678 |
| Cow position: | |
| Alignm length: | 534 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 240 |
| Conread position: | 147-678 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 194 |
| Conread position: | 199-678 |
| Cow position: | |
| Alignm length: | 480 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 200-678 |
| Cow position: | |
| Alignm length: | 480 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 475, 397 |
| Conread position: | 208-678 |
| Cow position: | |
| Alignm length: | 471 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 0 |
| Conread position: | 265-678 |
| Cow position: | |
| Alignm length: | 414 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 273-655 |
| Cow position: | |
| Alignm length: | 383 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 0 |
| Conread position: | 310-566 |
| Cow position: | |
| Alignm length: | 257 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 314-682 |
| Cow position: | |
| Alignm length: | 372 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 84, 18 |
| Conread position: | 324-476 |
| Cow position: | |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 348-684 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 35, 43 |
| Conread position: | 360-679 |
| Cow position: | |
| Alignm length: | 321 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 43 |
| Conread position: | 378-683 |
| Cow position: | |
| Alignm length: | 308 |
| Alignm identity: | 203 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 157, 15 |
| Conread position: | 379-684 |
| Cow position: | |
| Alignm length: | 313 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 156 |
| Conread position: | 381-620 |
| Cow position: | |
| Alignm length: | 244 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 142, 167 |
| Conread position: | 386-684 |
| Cow position: | |
| Alignm length: | 300 |
| Alignm identity: | 223 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 391-683 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 127, 37 |
| Conread position: | 408-679 |
| Cow position: | |
| Alignm length: | 274 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 0 |
| Conread position: | 432-678 |
| Cow position: | |
| Alignm length: | 247 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 436-678 |
| Cow position: | |
| Alignm length: | 243 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 0 |
| Conread position: | 453-681 |
| Cow position: | |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 27, 41 |
| Conread position: | 456-631 |
| Cow position: | |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 456-684 |
| Cow position: | |
| Alignm length: | 229 |
| Alignm identity: | 160 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 469-658 |
| Cow position: | |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 146, 36 |
| Conread position: | 477-678 |
| Cow position: | |
| Alignm length: | 202 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 501-678 |
| Cow position: | |
| Alignm length: | 178 |
| Alignm identity: | 148 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 504-679 |
| Cow position: | |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 171, 84 |
| Conread position: | 505-678 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 146 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 509-678 |
| Cow position: | |
| Alignm length: | 170 |
| Alignm identity: | 143 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 513-684 |
| Cow position: | |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 50, 68 |
| Conread position: | 519-662 |
| Cow position: | |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 552-655 |
| Cow position: | |
| Alignm length: | 104 |
| Alignm identity: | 87 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 556-678 |
| Cow position: | |
| Alignm length: | 123 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 36, 0 |
Show alignments to all cow chromosomes.