Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-157
Cow position:
Alignm length: 158
Alignm identity: 115
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 1-678
Cow position:
Alignm length: 697
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 19

Conread position: 6-678
Cow position:
Alignm length: 676
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 11

Conread position: 6-682
Cow position:
Alignm length: 680
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 6

Conread position: 7-684
Cow position:
Alignm length: 684
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 76

Conread position: 8-678
Cow position:
Alignm length: 673
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 115

Conread position: 8-678
Cow position:
Alignm length: 673
Alignm identity: 523
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 10

Conread position: 11-675
Cow position:
Alignm length: 673
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 211

Conread position: 11-675
Cow position:
Alignm length: 675
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 100

Conread position: 11-678
Cow position:
Alignm length: 670
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 47

Conread position: 11-678
Cow position:
Alignm length: 674
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 211

Conread position: 13-238
Cow position:
Alignm length: 227
Alignm identity: 162
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 5, 54

Conread position: 13-486
Cow position:
Alignm length: 476
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 13

Conread position: 13-491
Cow position:
Alignm length: 480
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 180

Conread position: 13-678
Cow position:
Alignm length: 668
Alignm identity: 527
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 297

Conread position: 13-678
Cow position:
Alignm length: 669
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 96

Conread position: 13-678
Cow position:
Alignm length: 670
Alignm identity: 528
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 195

Conread position: 13-678
Cow position:
Alignm length: 671
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 334

Conread position: 13-678
Cow position:
Alignm length: 668
Alignm identity: 525
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 298

Conread position: 17-522
Cow position:
Alignm length: 506
Alignm identity: 255
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 27, 0

Conread position: 17-678
Cow position:
Alignm length: 665
Alignm identity: 531
Alignm E-value: 0
Alignm gaps (pig, cow): 393, 26

Conread position: 18-343
Cow position:
Alignm length: 327
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-346
Cow position:
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-368
Cow position:
Alignm length: 352
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 205

Conread position: 18-485
Cow position:
Alignm length: 470
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 0

Conread position: 18-647
Cow position:
Alignm length: 630
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-674
Cow position:
Alignm length: 657
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 224, 0

Conread position: 18-674
Cow position:
Alignm length: 658
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 13

Conread position: 18-676
Cow position:
Alignm length: 659
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-678
Cow position:
Alignm length: 679
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 351, 188

Conread position: 18-678
Cow position:
Alignm length: 669
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 305

Conread position: 18-678
Cow position:
Alignm length: 663
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 191

Conread position: 18-679
Cow position:
Alignm length: 667
Alignm identity: 482
Alignm E-value: 0
Alignm gaps (pig, cow): 458, 219

Conread position: 18-679
Cow position:
Alignm length: 665
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 26

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 220

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 501, 89

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 658, 0

Conread position: 18-679
Cow position:
Alignm length: 665
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 197

Conread position: 19-220
Cow position:
Alignm length: 202
Alignm identity: 147
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 35, 0

Conread position: 19-542
Cow position:
Alignm length: 525
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 87

Conread position: 20-609
Cow position:
Alignm length: 599
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 125

Conread position: 29-681
Cow position:
Alignm length: 662
Alignm identity: 410
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 92, 54

Conread position: 30-446
Cow position:
Alignm length: 417
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 0

Conread position: 30-461
Cow position:
Alignm length: 434
Alignm identity: 270
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 386, 46

Conread position: 30-523
Cow position:
Alignm length: 496
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 66

Conread position: 30-682
Cow position:
Alignm length: 655
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 381, 101

Conread position: 30-684
Cow position:
Alignm length: 669
Alignm identity: 410
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 51, 216

Conread position: 31-610
Cow position:
Alignm length: 588
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 90

Conread position: 32-672
Cow position:
Alignm length: 641
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 0

Conread position: 33-346
Cow position:
Alignm length: 317
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 14

Conread position: 33-675
Cow position:
Alignm length: 643
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 33-683
Cow position:
Alignm length: 654
Alignm identity: 393
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 401, 80

Conread position: 43-622
Cow position:
Alignm length: 584
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 105

Conread position: 51-665
Cow position:
Alignm length: 619
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 50

Conread position: 67-684
Cow position:
Alignm length: 626
Alignm identity: 391
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 279, 44

Conread position: 69-661
Cow position:
Alignm length: 597
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 62

Conread position: 71-346
Cow position:
Alignm length: 276
Alignm identity: 195
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 139, 0

Conread position: 71-346
Cow position:
Alignm length: 276
Alignm identity: 188
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 135, 0

Conread position: 75-684
Cow position:
Alignm length: 610
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 0

Conread position: 88-683
Cow position:
Alignm length: 607
Alignm identity: 381
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 13, 7

Conread position: 103-670
Cow position:
Alignm length: 569
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 39

Conread position: 109-678
Cow position:
Alignm length: 570
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 87, 0

Conread position: 111-679
Cow position:
Alignm length: 570
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 365, 98

Conread position: 113-529
Cow position:
Alignm length: 422
Alignm identity: 267
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 79, 90

Conread position: 115-578
Cow position:
Alignm length: 466
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 115-678
Cow position:
Alignm length: 565
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 87

Conread position: 116-505
Cow position:
Alignm length: 399
Alignm identity: 258
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 18, 53

Conread position: 128-511
Cow position:
Alignm length: 384
Alignm identity: 244
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 57, 0

Conread position: 130-338
Cow position:
Alignm length: 209
Alignm identity: 141
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 89, 0

Conread position: 136-678
Cow position:
Alignm length: 547
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 84

Conread position: 149-402
Cow position:
Alignm length: 254
Alignm identity: 137
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 155, 0

Conread position: 149-678
Cow position:
Alignm length: 530
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 156-684
Cow position:
Alignm length: 530
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 521, 105

Conread position: 166-667
Cow position:
Alignm length: 518
Alignm identity: 340
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 145, 62

Conread position: 169-684
Cow position:
Alignm length: 519
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 228

Conread position: 176-683
Cow position:
Alignm length: 514
Alignm identity: 331
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 99, 33

Conread position: 178-336
Cow position:
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 137, 0

Conread position: 188-373
Cow position:
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 192-678
Cow position:
Alignm length: 487
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 199-503
Cow position:
Alignm length: 314
Alignm identity: 219
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 10, 78

Conread position: 201-683
Cow position:
Alignm length: 501
Alignm identity: 322
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 51, 28

Conread position: 202-678
Cow position:
Alignm length: 477
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 206-675
Cow position:
Alignm length: 473
Alignm identity: 290
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 195, 20

Conread position: 229-683
Cow position:
Alignm length: 469
Alignm identity: 313
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 26, 19

Conread position: 256-683
Cow position:
Alignm length: 431
Alignm identity: 297
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 87

Conread position: 260-665
Cow position:
Alignm length: 406
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 0

Conread position: 286-678
Cow position:
Alignm length: 395
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 50

Conread position: 297-662
Cow position:
Alignm length: 373
Alignm identity: 244
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 114, 73

Conread position: 310-649
Cow position:
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 48

Conread position: 316-683
Cow position:
Alignm length: 373
Alignm identity: 235
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 70, 93

Conread position: 322-683
Cow position:
Alignm length: 363
Alignm identity: 235
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 19, 60

Conread position: 325-678
Cow position:
Alignm length: 361
Alignm identity: 229
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 21

Conread position: 336-595
Cow position:
Alignm length: 261
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 339-678
Cow position:
Alignm length: 341
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 339-678
Cow position:
Alignm length: 340
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 342-523
Cow position:
Alignm length: 183
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 24, 29

Conread position: 350-678
Cow position:
Alignm length: 329
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 268, 0

Conread position: 353-684
Cow position:
Alignm length: 342
Alignm identity: 240
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 57, 40

Conread position: 358-607
Cow position:
Alignm length: 250
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 0

Conread position: 373-659
Cow position:
Alignm length: 288
Alignm identity: 183
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 190, 56

Conread position: 378-683
Cow position:
Alignm length: 308
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 48

Conread position: 384-530
Cow position:
Alignm length: 148
Alignm identity: 109
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 122, 104

Conread position: 396-684
Cow position:
Alignm length: 289
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 0

Conread position: 399-684
Cow position:
Alignm length: 290
Alignm identity: 195
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 21, 177

Conread position: 404-632
Cow position:
Alignm length: 229
Alignm identity: 179
Alignm E-value: 0
Alignm gaps (pig, cow): 211, 0

Conread position: 416-667
Cow position:
Alignm length: 256
Alignm identity: 175
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 61, 66

Conread position: 426-678
Cow position:
Alignm length: 263
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 28

Conread position: 460-678
Cow position:
Alignm length: 223
Alignm identity: 178
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 199

Conread position: 475-678
Cow position:
Alignm length: 204
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 479-650
Cow position:
Alignm length: 172
Alignm identity: 138
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 53, 0

Conread position: 496-667
Cow position:
Alignm length: 172
Alignm identity: 130
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 92, 0

Conread position: 519-678
Cow position:
Alignm length: 160
Alignm identity: 131
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 537-678
Cow position:
Alignm length: 144
Alignm identity: 114
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 550-678
Cow position:
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 63, 0

Conread position: 562-679
Cow position:
Alignm length: 118
Alignm identity: 95
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 53, 0

Show alignments to all cow chromosomes.