Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 2-320
Cow position: chr19:42649382-42649079 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 207
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 3-684
Cow position: chr19:32223747-32223088 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 50

Conread position: 5-683
Cow position: chr19:36036046-36036695 (view UCSC Genome Browser custom track)
Alignm length: 685
Alignm identity: 426
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 13, 129

Conread position: 6-515
Cow position: chr19:548078-548557 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 132

Conread position: 7-495
Cow position: chr19:32183759-32183290 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 313
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 318, 9

Conread position: 7-678
Cow position: chr19:171057-170391 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 10

Conread position: 11-174
Cow position: chr19:801678-801842 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 119
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 7, 0

Conread position: 11-560
Cow position: chr19:30371963-30372511 (view UCSC Genome Browser custom track)
Alignm length: 559
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 21

Conread position: 11-577
Cow position: chr19:31341411-31341976 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 33

Conread position: 13-215
Cow position: chr19:350885-350675 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 152
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 5, 65

Conread position: 13-359
Cow position: chr19:1031803-1032138 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 94

Conread position: 13-394
Cow position: chr19:4252668-4252288 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 196

Conread position: 13-452
Cow position: chr19:4533054-4532625 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 21

Conread position: 13-485
Cow position: chr19:29209256-29209721 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 171

Conread position: 13-548
Cow position: chr19:34112-34641 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 149

Conread position: 13-599
Cow position: chr19:35978957-35979543 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 206

Conread position: 13-643
Cow position: chr19:39688239-39688847 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 86

Conread position: 13-665
Cow position: chr19:32665222-32665867 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 233

Conread position: 13-675
Cow position: chr19:416338-417012 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 45

Conread position: 16-635
Cow position: chr19:20111531-20110944 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 396
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 103, 206

Conread position: 17-678
Cow position: chr19:76538-75913 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 658, 88

Conread position: 17-684
Cow position: chr19:30754870-30755530 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 61

Conread position: 18-173
Cow position: chr19:25622722-25622567 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 29

Conread position: 18-201
Cow position: chr19:33872939-33873117 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 5, 13

Conread position: 18-346
Cow position: chr19:52152554-52152238 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 18-449
Cow position: chr19:32193279-32193704 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-544
Cow position: chr19:55078441-55078967 (view UCSC Genome Browser custom track)
Alignm length: 527
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-640
Cow position: chr19:32244375-32245001 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 0

Conread position: 18-662
Cow position: chr19:40887950-40887316 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 67

Conread position: 18-665
Cow position: chr19:28581943-28581317 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 476
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 27

Conread position: 18-670
Cow position: chr19:439951-439310 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 352

Conread position: 18-678
Cow position: chr19:37603-38250 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-678
Cow position: chr19:772305-772954 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 18-678
Cow position: chr19:7341767-7342423 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 174

Conread position: 18-678
Cow position: chr19:10672611-10671951 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 318

Conread position: 18-678
Cow position: chr19:32212365-32211718 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 77

Conread position: 18-678
Cow position: chr19:40852735-40852083 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 0

Conread position: 18-678
Cow position: chr19:43143411-43144071 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 191

Conread position: 18-679
Cow position: chr19:171906-172567 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-679
Cow position: chr19:203658-204318 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 95

Conread position: 18-679
Cow position: chr19:4385180-4385826 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 404, 265

Conread position: 18-679
Cow position: chr19:7488008-7488670 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 0

Conread position: 18-679
Cow position: chr19:33941307-33941967 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 564, 458

Conread position: 18-679
Cow position: chr19:39390218-39390865 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 41

Conread position: 19-527
Cow position: chr19:5865144-5864636 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 319
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 45, 130

Conread position: 20-216
Cow position: chr19:36477058-36477249 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 93, 0

Conread position: 30-335
Cow position: chr19:685562-685855 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 211
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 65, 0

Conread position: 30-678
Cow position: chr19:28592987-28593618 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 481
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 83

Conread position: 33-608
Cow position: chr19:261150-261728 (view UCSC Genome Browser custom track)
Alignm length: 590
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 89

Conread position: 41-281
Cow position: chr19:32238144-32237899 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 161, 8

Conread position: 50-683
Cow position: chr19:7450270-7449669 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 99, 50

Conread position: 54-522
Cow position: chr19:20125361-20125802 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 28

Conread position: 54-683
Cow position: chr19:32202488-32203099 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 79

Conread position: 60-336
Cow position: chr19:35376292-35376572 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 61, 143

Conread position: 60-678
Cow position: chr19:39546374-39546966 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 11

Conread position: 77-684
Cow position: chr19:893848-893253 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 598, 59

Conread position: 86-428
Cow position: chr19:561731-561403 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 238
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 38, 0

Conread position: 102-327
Cow position: chr19:378094-377871 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 168
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 17, 52

Conread position: 103-610
Cow position: chr19:42299719-42299209 (view UCSC Genome Browser custom track)
Alignm length: 516
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 173

Conread position: 126-678
Cow position: chr19:15953665-15954192 (view UCSC Genome Browser custom track)
Alignm length: 554
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 70

Conread position: 144-622
Cow position: chr19:44759672-44760154 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 304
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 14, 6

Conread position: 147-469
Cow position: chr19:27052939-27052623 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 0

Conread position: 147-678
Cow position: chr19:15041988-15042512 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 69

Conread position: 152-684
Cow position: chr19:10517276-10516742 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 350
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 7, 163

Conread position: 153-571
Cow position: chr19:359672-359260 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 375, 31

Conread position: 160-544
Cow position: chr19:543790-543405 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 102

Conread position: 162-449
Cow position: chr19:28376370-28376644 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 177-684
Cow position: chr19:42248669-42249164 (view UCSC Genome Browser custom track)
Alignm length: 508
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 200-679
Cow position: chr19:33873304-33873783 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 475, 190

Conread position: 219-638
Cow position: chr19:350387-349976 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 0

Conread position: 228-670
Cow position: chr19:6553518-6553947 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 0

Conread position: 229-583
Cow position: chr19:32785705-32785355 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 226
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 184, 179

Conread position: 256-504
Cow position: chr19:18728790-18729031 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 164
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 73, 0

Conread position: 269-570
Cow position: chr19:32237734-32237440 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 0

Conread position: 315-568
Cow position: chr19:7405483-7405231 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 97

Conread position: 339-678
Cow position: chr19:687080-687418 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 229

Conread position: 342-678
Cow position: chr19:20104732-20105068 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 27

Conread position: 342-678
Cow position: chr19:52151812-52151475 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 0

Conread position: 348-684
Cow position: chr19:377871-377552 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 237
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 134, 32

Conread position: 359-543
Cow position: chr19:27038119-27037940 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 65, 31

Conread position: 359-658
Cow position: chr19:2274338-2274043 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 0

Conread position: 363-684
Cow position: chr19:13114417-13114099 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 209
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 118, 124

Conread position: 364-678
Cow position: chr19:1032118-1032430 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 0

Conread position: 372-578
Cow position: chr19:7068518-7068715 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 151
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 66, 16

Conread position: 378-669
Cow position: chr19:30428041-30428331 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 201
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 65, 16

Conread position: 383-684
Cow position: chr19:352933-352630 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 0

Conread position: 386-684
Cow position: chr19:35376850-35377142 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 0

Conread position: 389-684
Cow position: chr19:680549-680257 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 201
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 175, 13

Conread position: 399-683
Cow position: chr19:1491661-1491378 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 200
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 12, 83

Conread position: 412-652
Cow position: chr19:17018554-17018781 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 34

Conread position: 425-678
Cow position: chr19:42649010-42648759 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 480-678
Cow position: chr19:28376641-28376841 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 481-684
Cow position: chr19:40817545-40817341 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 158
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 195, 0

Conread position: 483-624
Cow position: chr19:4532624-4532483 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 486-678
Cow position: chr19:29209762-29209952 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 0

Conread position: 495-679
Cow position: chr19:5729000-5729186 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 37, 0

Conread position: 498-647
Cow position: chr19:439286-439137 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 517-678
Cow position: chr19:341416-341576 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 136
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 12, 0

Conread position: 534-678
Cow position: chr19:4532418-4532283 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 91, 0

Conread position: 550-684
Cow position: chr19:42912-43046 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 106
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 550-684
Cow position: chr19:27052621-27052489 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 116
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 91, 0

Conread position: 553-684
Cow position: chr19:163200-163067 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 104
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 125, 0

Conread position: 562-678
Cow position: chr19:5208411-5208527 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 104
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 581-678
Cow position: chr19:30372505-30372601 (view UCSC Genome Browser custom track)
Alignm length: 98
Alignm identity: 82
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 17, 0

Show alignments to all cow chromosomes.