Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010062G02.5 |
| Conread position: | 1-276 |
| Cow position: | chr20:11276657-11276386 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 20, 114 |
| Conread position: | 3-683 |
| Cow position: | chr20:37579097-37579742 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 13 |
| Conread position: | 6-678 |
| Cow position: | chr20:18315941-18315295 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 117 |
| Conread position: | 6-679 |
| Cow position: | chr20:12439121-12438447 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 669, 0 |
| Conread position: | 6-683 |
| Cow position: | chr20:15064406-15065083 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 506 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 12 |
| Conread position: | 8-683 |
| Cow position: | chr20:31379230-31378570 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 89 |
| Conread position: | 10-226 |
| Cow position: | chr20:8004870-8004651 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 10-471 |
| Cow position: | chr20:29572544-29572088 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 212 |
| Conread position: | 10-675 |
| Cow position: | chr20:3270366-3271013 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 129 |
| Conread position: | 11-678 |
| Cow position: | chr20:3252495-3251823 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 37 |
| Conread position: | 11-678 |
| Cow position: | chr20:8313786-8313128 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 31 |
| Conread position: | 11-678 |
| Cow position: | chr20:24614194-24614848 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 207 |
| Conread position: | 13-277 |
| Cow position: | chr20:3032584-3032840 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 197 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 5, 160 |
| Conread position: | 13-385 |
| Cow position: | chr20:28593397-28593765 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 40 |
| Conread position: | 16-670 |
| Cow position: | chr20:21913977-21914631 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 383, 68 |
| Conread position: | 17-463 |
| Cow position: | chr20:4799993-4799554 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 17-541 |
| Cow position: | chr20:8371236-8370738 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 335 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 98, 40 |
| Conread position: | 17-636 |
| Cow position: | chr20:20755778-20755179 (view UCSC Genome Browser custom track) |
| Alignm length: | 637 |
| Alignm identity: | 419 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 109, 37 |
| Conread position: | 17-678 |
| Cow position: | chr20:5483845-5484502 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 516 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 42 |
| Conread position: | 17-683 |
| Cow position: | chr20:2791698-2791025 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 214 |
| Conread position: | 18-161 |
| Cow position: | chr20:15291700-15291843 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-196 |
| Cow position: | chr20:29947838-29948016 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-204 |
| Cow position: | chr20:31124058-31124244 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-678 |
| Cow position: | chr20:822410-823079 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 183, 77 |
| Conread position: | 18-678 |
| Cow position: | chr20:5561063-5560403 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 513 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-678 |
| Cow position: | chr20:19437617-19438252 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 492 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 18-678 |
| Cow position: | chr20:23470008-23469354 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 529 |
| Conread position: | 18-679 |
| Cow position: | chr20:13762558-13763218 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 512 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 444, 199 |
| Conread position: | 18-679 |
| Cow position: | chr20:20905529-20904902 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 113 |
| Conread position: | 18-679 |
| Cow position: | chr20:23798535-23799199 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 506, 95 |
| Conread position: | 18-679 |
| Cow position: | chr20:25851338-25850677 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 495 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 349 |
| Conread position: | 18-679 |
| Cow position: | chr20:28565948-28565282 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 33 |
| Conread position: | 18-679 |
| Cow position: | chr20:30683991-30684634 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 501, 265 |
| Conread position: | 19-384 |
| Cow position: | chr20:13757915-13758274 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 75, 177 |
| Conread position: | 19-474 |
| Cow position: | chr20:22718026-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 73 |
| Conread position: | 30-508 |
| Cow position: | chr20:21393237-21393706 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 359, 178 |
| Conread position: | 30-521 |
| Cow position: | chr20:2676784-2677270 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 103 |
| Conread position: | 30-679 |
| Cow position: | chr20:5534606-5535251 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 645, 179 |
| Conread position: | 30-679 |
| Cow position: | chr20:15098203-15097563 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 481 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 92 |
| Conread position: | 33-679 |
| Cow position: | chr20:7116803-7116156 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 196, 0 |
| Conread position: | 33-679 |
| Cow position: | chr20:27868865-27869511 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 642, 22 |
| Conread position: | 33-679 |
| Cow position: | chr20:28160448-28161084 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 251 |
| Conread position: | 36-464 |
| Cow position: | chr20:10102875-10102461 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 87 |
| Conread position: | 36-684 |
| Cow position: | chr20:9954283-9953672 (view UCSC Genome Browser custom track) |
| Alignm length: | 649 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 49-476 |
| Cow position: | chr20:7085885-7085470 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 273 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 53-433 |
| Cow position: | chr20:10846391-10846010 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 340, 0 |
| Conread position: | 93-401 |
| Cow position: | chr20:19192400-19192093 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 93-658 |
| Cow position: | chr20:13782449-13782980 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 365 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 64, 54 |
| Conread position: | 99-429 |
| Cow position: | chr20:35119058-35119389 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 312, 184 |
| Conread position: | 103-679 |
| Cow position: | chr20:35119311-35119883 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 389 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 181 |
| Conread position: | 108-684 |
| Cow position: | chr20:22206285-22206854 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 150 |
| Conread position: | 114-661 |
| Cow position: | chr20:13665438-13664921 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 418, 21 |
| Conread position: | 131-558 |
| Cow position: | chr20:11679345-11678918 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-541 |
| Cow position: | chr20:24516807-24517206 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 23, 8 |
| Conread position: | 161-391 |
| Cow position: | chr20:24390168-24390389 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 58, 178 |
| Conread position: | 175-506 |
| Cow position: | chr20:18328245-18327929 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 212, 66 |
| Conread position: | 179-678 |
| Cow position: | chr20:36786693-36786201 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 312 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 103, 62 |
| Conread position: | 192-683 |
| Cow position: | chr20:8835805-8835322 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 74 |
| Conread position: | 200-679 |
| Cow position: | chr20:8004392-8003912 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 300 |
| Conread position: | 202-679 |
| Cow position: | chr20:15291854-15292324 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 473, 81 |
| Conread position: | 241-678 |
| Cow position: | chr20:15947518-15947068 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 339 |
| Conread position: | 242-652 |
| Cow position: | chr20:28476194-28476579 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 274 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 281, 32 |
| Conread position: | 258-684 |
| Cow position: | chr20:25960995-25961421 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 267-678 |
| Cow position: | chr20:13680156-13679745 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 106 |
| Conread position: | 271-683 |
| Cow position: | chr20:3032969-3033379 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 405, 38 |
| Conread position: | 311-679 |
| Cow position: | chr20:29948444-29948812 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 327-684 |
| Cow position: | chr20:3684524-3684170 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 0 |
| Conread position: | 358-638 |
| Cow position: | chr20:5233158-5232888 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 64 |
| Conread position: | 369-684 |
| Cow position: | chr20:13434942-13434638 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 15, 44 |
| Conread position: | 373-682 |
| Cow position: | chr20:13767396-13767690 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 38, 127 |
| Conread position: | 378-661 |
| Cow position: | chr20:28463486-28463770 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 196 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 16, 124 |
| Conread position: | 384-627 |
| Cow position: | chr20:10841229-10840986 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 387-658 |
| Cow position: | chr20:42809267-42809001 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 120, 24 |
| Conread position: | 392-684 |
| Cow position: | chr20:8993618-8993332 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 432-621 |
| Cow position: | chr20:19367523-19367334 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 91, 126 |
| Conread position: | 432-678 |
| Cow position: | chr20:10856966-10856726 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 176 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 85, 56 |
| Conread position: | 436-684 |
| Cow position: | chr20:35104562-35104312 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 184 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 472-671 |
| Cow position: | chr20:10846011-10845817 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 162 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 493-678 |
| Cow position: | chr20:21393721-21393905 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 14, 8 |
| Conread position: | 553-678 |
| Cow position: | chr20:19495170-19495295 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.