Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-251
Cow position:
Alignm length: 253
Alignm identity: 181
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 220, 0

Conread position: 1-382
Cow position:
Alignm length: 388
Alignm identity: 258
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 61, 20

Conread position: 1-392
Cow position:
Alignm length: 394
Alignm identity: 263
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 20, 45

Conread position: 1-675
Cow position:
Alignm length: 676
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 582, 17

Conread position: 1-684
Cow position:
Alignm length: 693
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 49

Conread position: 3-509
Cow position:
Alignm length: 539
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 15

Conread position: 3-684
Cow position:
Alignm length: 683
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 298

Conread position: 6-457
Cow position:
Alignm length: 454
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 26

Conread position: 6-679
Cow position:
Alignm length: 676
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 6-684
Cow position:
Alignm length: 682
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 28

Conread position: 6-684
Cow position:
Alignm length: 681
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 204

Conread position: 7-365
Cow position:
Alignm length: 365
Alignm identity: 232
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 202, 12

Conread position: 7-677
Cow position:
Alignm length: 681
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 71

Conread position: 11-378
Cow position:
Alignm length: 371
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 208

Conread position: 12-678
Cow position:
Alignm length: 671
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 8

Conread position: 13-251
Cow position:
Alignm length: 241
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 13-675
Cow position:
Alignm length: 666
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 0

Conread position: 13-678
Cow position:
Alignm length: 668
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 198

Conread position: 13-678
Cow position:
Alignm length: 667
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 207

Conread position: 13-683
Cow position:
Alignm length: 680
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 14

Conread position: 13-684
Cow position:
Alignm length: 673
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 70

Conread position: 13-684
Cow position:
Alignm length: 673
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 167

Conread position: 17-303
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 40

Conread position: 17-521
Cow position:
Alignm length: 507
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 235, 45

Conread position: 17-678
Cow position:
Alignm length: 664
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 50

Conread position: 17-678
Cow position:
Alignm length: 672
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 179

Conread position: 17-684
Cow position:
Alignm length: 685
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 185

Conread position: 18-210
Cow position:
Alignm length: 193
Alignm identity: 145
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 113, 0

Conread position: 18-307
Cow position:
Alignm length: 297
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 8

Conread position: 18-307
Cow position:
Alignm length: 290
Alignm identity: 200
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 18-336
Cow position:
Alignm length: 319
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 0

Conread position: 18-353
Cow position:
Alignm length: 337
Alignm identity: 218
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 113, 46

Conread position: 18-461
Cow position:
Alignm length: 445
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-625
Cow position:
Alignm length: 608
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-671
Cow position:
Alignm length: 654
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 18-678
Cow position:
Alignm length: 663
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 124

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 188, 0

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 508, 144

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 426, 0

Conread position: 18-678
Cow position:
Alignm length: 672
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 87

Conread position: 18-678
Cow position:
Alignm length: 665
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 165

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 570, 8

Conread position: 18-679
Cow position:
Alignm length: 688
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 156

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 211

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 619

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 0

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 658, 404

Conread position: 18-684
Cow position:
Alignm length: 668
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 263

Conread position: 20-678
Cow position:
Alignm length: 662
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 505, 234

Conread position: 21-678
Cow position:
Alignm length: 662
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 26

Conread position: 22-350
Cow position:
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 22-530
Cow position:
Alignm length: 513
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 216

Conread position: 30-317
Cow position:
Alignm length: 288
Alignm identity: 203
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 30-634
Cow position:
Alignm length: 605
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 30-639
Cow position:
Alignm length: 612
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 80

Conread position: 30-662
Cow position:
Alignm length: 655
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 105

Conread position: 30-675
Cow position:
Alignm length: 647
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 156

Conread position: 30-678
Cow position:
Alignm length: 663
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 281

Conread position: 30-679
Cow position:
Alignm length: 652
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 130

Conread position: 30-679
Cow position:
Alignm length: 651
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 135

Conread position: 30-679
Cow position:
Alignm length: 652
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 20

Conread position: 30-683
Cow position:
Alignm length: 659
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 245, 28

Conread position: 30-683
Cow position:
Alignm length: 654
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 0

Conread position: 36-683
Cow position:
Alignm length: 649
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 639, 0

Conread position: 36-684
Cow position:
Alignm length: 660
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 421, 79

Conread position: 43-648
Cow position:
Alignm length: 613
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 61

Conread position: 46-388
Cow position:
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 151

Conread position: 48-382
Cow position:
Alignm length: 335
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 51-678
Cow position:
Alignm length: 629
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 456, 71

Conread position: 53-678
Cow position:
Alignm length: 629
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 166

Conread position: 75-607
Cow position:
Alignm length: 538
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 132

Conread position: 76-460
Cow position:
Alignm length: 388
Alignm identity: 255
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 332, 36

Conread position: 84-684
Cow position:
Alignm length: 605
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 184, 69

Conread position: 102-548
Cow position:
Alignm length: 450
Alignm identity: 291
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 57, 13

Conread position: 108-672
Cow position:
Alignm length: 566
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 59

Conread position: 124-675
Cow position:
Alignm length: 554
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 451, 23

Conread position: 126-684
Cow position:
Alignm length: 560
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 97

Conread position: 145-665
Cow position:
Alignm length: 522
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 32

Conread position: 147-672
Cow position:
Alignm length: 538
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 241, 64

Conread position: 152-678
Cow position:
Alignm length: 527
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 0

Conread position: 153-559
Cow position:
Alignm length: 407
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 174-683
Cow position:
Alignm length: 514
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 45

Conread position: 186-678
Cow position:
Alignm length: 493
Alignm identity: 381
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 189-616
Cow position:
Alignm length: 434
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 136

Conread position: 191-684
Cow position:
Alignm length: 495
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 18

Conread position: 192-621
Cow position:
Alignm length: 436
Alignm identity: 276
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 35, 22

Conread position: 199-518
Cow position:
Alignm length: 326
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 140

Conread position: 199-679
Cow position:
Alignm length: 487
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 255, 110

Conread position: 208-683
Cow position:
Alignm length: 477
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 5

Conread position: 214-683
Cow position:
Alignm length: 474
Alignm identity: 291
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 82, 21

Conread position: 229-678
Cow position:
Alignm length: 459
Alignm identity: 304
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 58, 64

Conread position: 231-678
Cow position:
Alignm length: 451
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 52

Conread position: 250-678
Cow position:
Alignm length: 429
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 256-678
Cow position:
Alignm length: 425
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 394, 53

Conread position: 270-678
Cow position:
Alignm length: 409
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 0

Conread position: 273-684
Cow position:
Alignm length: 414
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 65

Conread position: 281-662
Cow position:
Alignm length: 388
Alignm identity: 249
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 27, 17

Conread position: 291-499
Cow position:
Alignm length: 209
Alignm identity: 157
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 108, 0

Conread position: 295-468
Cow position:
Alignm length: 176
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 52, 138

Conread position: 298-684
Cow position:
Alignm length: 387
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 0

Conread position: 305-678
Cow position:
Alignm length: 375
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 81

Conread position: 307-666
Cow position:
Alignm length: 360
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 310-581
Cow position:
Alignm length: 276
Alignm identity: 195
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 82

Conread position: 310-678
Cow position:
Alignm length: 372
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 65

Conread position: 324-678
Cow position:
Alignm length: 355
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 351-651
Cow position:
Alignm length: 301
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 0

Conread position: 359-678
Cow position:
Alignm length: 320
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 0

Conread position: 361-667
Cow position:
Alignm length: 312
Alignm identity: 200
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 61

Conread position: 363-682
Cow position:
Alignm length: 321
Alignm identity: 218
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 168, 31

Conread position: 371-677
Cow position:
Alignm length: 308
Alignm identity: 190
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 297, 152

Conread position: 378-678
Cow position:
Alignm length: 304
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 54

Conread position: 378-683
Cow position:
Alignm length: 308
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 30

Conread position: 380-665
Cow position:
Alignm length: 289
Alignm identity: 197
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 59, 37

Conread position: 385-542
Cow position:
Alignm length: 159
Alignm identity: 126
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 137, 146

Conread position: 403-682
Cow position:
Alignm length: 293
Alignm identity: 197
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 170, 20

Conread position: 404-682
Cow position:
Alignm length: 280
Alignm identity: 188
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 12, 75

Conread position: 411-605
Cow position:
Alignm length: 196
Alignm identity: 152
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 29, 85

Conread position: 425-678
Cow position:
Alignm length: 254
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 449-684
Cow position:
Alignm length: 236
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 451-678
Cow position:
Alignm length: 228
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 0

Conread position: 460-591
Cow position:
Alignm length: 132
Alignm identity: 106
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 462-640
Cow position:
Alignm length: 179
Alignm identity: 140
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 34, 0

Conread position: 472-684
Cow position:
Alignm length: 214
Alignm identity: 163
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 16, 58

Conread position: 473-682
Cow position:
Alignm length: 212
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 114, 123

Conread position: 476-678
Cow position:
Alignm length: 203
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 480-626
Cow position:
Alignm length: 147
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 26, 0

Conread position: 486-650
Cow position:
Alignm length: 166
Alignm identity: 136
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 111, 0

Conread position: 529-678
Cow position:
Alignm length: 150
Alignm identity: 122
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 529-678
Cow position:
Alignm length: 150
Alignm identity: 122
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 534-678
Cow position:
Alignm length: 145
Alignm identity: 121
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 555-666
Cow position:
Alignm length: 112
Alignm identity: 88
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 570-678
Cow position:
Alignm length: 110
Alignm identity: 97
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 11, 64

Conread position: 580-678
Cow position:
Alignm length: 99
Alignm identity: 83
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 585-678
Cow position:
Alignm length: 94
Alignm identity: 84
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.