Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-304
Cow position: chr23:31595597-31595293 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 28

Conread position: 3-402
Cow position: chr23:19017292-19017676 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 275
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 15, 100

Conread position: 3-621
Cow position: chr23:1025467-1024863 (view UCSC Genome Browser custom track)
Alignm length: 623
Alignm identity: 447
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 97

Conread position: 6-595
Cow position: chr23:4815659-4816250 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 156

Conread position: 6-678
Cow position: chr23:4509691-4510336 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 192

Conread position: 6-678
Cow position: chr23:7273248-7273889 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 7

Conread position: 8-557
Cow position: chr23:2339995-2340532 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 91

Conread position: 11-639
Cow position: chr23:5875181-5874563 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 207

Conread position: 11-678
Cow position: chr23:5779495-5778829 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 26

Conread position: 13-525
Cow position: chr23:16481758-16481268 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 126

Conread position: 13-674
Cow position: chr23:22147666-22147000 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 642

Conread position: 13-678
Cow position: chr23:4359429-4360088 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 83

Conread position: 13-679
Cow position: chr23:11778079-11778748 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 109

Conread position: 17-317
Cow position: chr23:1330688-1330392 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 0

Conread position: 17-625
Cow position: chr23:3013229-3013851 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 117

Conread position: 17-678
Cow position: chr23:989043-988389 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 336, 370

Conread position: 18-207
Cow position: chr23:14966374-14966185 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 145
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 18-314
Cow position: chr23:1141168-1141447 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 208
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 74, 0

Conread position: 18-336
Cow position: chr23:2574164-2574481 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 109

Conread position: 18-637
Cow position: chr23:13508671-13509269 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 83

Conread position: 18-678
Cow position: chr23:967749-967091 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 500

Conread position: 18-678
Cow position: chr23:4434070-4434715 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 505, 97

Conread position: 18-678
Cow position: chr23:15220294-15219633 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 95

Conread position: 18-678
Cow position: chr23:19950986-19950325 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 408

Conread position: 18-678
Cow position: chr23:20301810-20302470 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 417

Conread position: 18-678
Cow position: chr23:28216890-28217548 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 29

Conread position: 18-679
Cow position: chr23:2795963-2795308 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 575, 265

Conread position: 18-679
Cow position: chr23:3882096-3881445 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 33

Conread position: 18-679
Cow position: chr23:4641026-4640364 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 33

Conread position: 18-679
Cow position: chr23:15525212-15525870 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 655, 195

Conread position: 18-679
Cow position: chr23:19489139-19489802 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 191

Conread position: 18-679
Cow position: chr23:30636703-30636041 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 562, 490

Conread position: 18-683
Cow position: chr23:27399101-27399767 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 274

Conread position: 19-210
Cow position: chr23:14975162-14974978 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 103, 0

Conread position: 19-496
Cow position: chr23:20988569-20989031 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 314
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 271, 47

Conread position: 25-678
Cow position: chr23:31446420-31447073 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 22

Conread position: 30-336
Cow position: chr23:2715962-2716263 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 0

Conread position: 30-665
Cow position: chr23:36031759-36031128 (view UCSC Genome Browser custom track)
Alignm length: 637
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 180

Conread position: 30-679
Cow position: chr23:2027515-2026859 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 189

Conread position: 30-679
Cow position: chr23:28913023-28913653 (view UCSC Genome Browser custom track)
Alignm length: 652
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 243

Conread position: 33-352
Cow position: chr23:2765754-2765449 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 0

Conread position: 33-678
Cow position: chr23:4276572-4277213 (view UCSC Genome Browser custom track)
Alignm length: 647
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 461, 163

Conread position: 46-199
Cow position: chr23:6469648-6469495 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 118
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 48-683
Cow position: chr23:19332772-19332146 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 101

Conread position: 49-684
Cow position: chr23:4751644-4752250 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 18

Conread position: 50-422
Cow position: chr23:22875998-22875632 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 86

Conread position: 51-615
Cow position: chr23:22945430-22944877 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 355
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 74, 127

Conread position: 52-387
Cow position: chr23:8980856-8980525 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 0

Conread position: 55-645
Cow position: chr23:34174824-34175402 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 67

Conread position: 62-319
Cow position: chr23:2725505-2725754 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 174
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 49, 0

Conread position: 87-678
Cow position: chr23:2313570-2312982 (view UCSC Genome Browser custom track)
Alignm length: 592
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 345, 0

Conread position: 101-678
Cow position: chr23:16617169-16616588 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 222

Conread position: 106-662
Cow position: chr23:34095864-34096412 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 333
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 136

Conread position: 108-678
Cow position: chr23:15176763-15177329 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 380, 0

Conread position: 116-317
Cow position: chr23:16616168-16615971 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 142
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 92, 0

Conread position: 125-683
Cow position: chr23:39026154-39026712 (view UCSC Genome Browser custom track)
Alignm length: 573
Alignm identity: 358
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 82, 87

Conread position: 132-420
Cow position: chr23:7750105-7750393 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 250, 177

Conread position: 139-683
Cow position: chr23:17184867-17185391 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 359
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 18, 10

Conread position: 141-683
Cow position: chr23:4888402-4888937 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 534, 228

Conread position: 149-679
Cow position: chr23:2757310-2757854 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 35

Conread position: 173-643
Cow position: chr23:2524442-2523974 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 48

Conread position: 191-662
Cow position: chr23:20156459-20155973 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 18

Conread position: 196-684
Cow position: chr23:38578072-38578538 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 12

Conread position: 199-668
Cow position: chr23:14974782-14974315 (view UCSC Genome Browser custom track)
Alignm length: 472
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 199-679
Cow position: chr23:14965967-14965492 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 225

Conread position: 205-490
Cow position: chr23:25847080-25847361 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 179
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 0

Conread position: 241-682
Cow position: chr23:6216396-6216833 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 191

Conread position: 247-672
Cow position: chr23:25684231-25683812 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 31

Conread position: 283-678
Cow position: chr23:31591945-31591544 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 129, 63

Conread position: 289-656
Cow position: chr23:3380408-3380050 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 248
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 22, 45

Conread position: 295-683
Cow position: chr23:7047185-7046792 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 138, 62

Conread position: 297-672
Cow position: chr23:29474676-29474311 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 59

Conread position: 310-684
Cow position: chr23:1327570-1327210 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 146

Conread position: 322-679
Cow position: chr23:2716290-2716648 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 158

Conread position: 322-683
Cow position: chr23:10903434-10903800 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 28

Conread position: 348-673
Cow position: chr23:2763835-2763522 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 222
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 12, 107

Conread position: 358-678
Cow position: chr23:36211190-36210862 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 229
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 65, 295

Conread position: 365-660
Cow position: chr23:31595292-31594996 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 365-678
Cow position: chr23:2574481-2574793 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 0

Conread position: 372-547
Cow position: chr23:31651602-31651433 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 31, 77

Conread position: 372-683
Cow position: chr23:9207369-9207673 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 209
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 16, 106

Conread position: 376-644
Cow position: chr23:19450213-19450475 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 188
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 28, 36

Conread position: 381-604
Cow position: chr23:14921048-14920826 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 150
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 153, 40

Conread position: 404-655
Cow position: chr23:7352208-7352454 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 169
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 15, 24

Conread position: 412-678
Cow position: chr23:8980318-8980063 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 206
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 43

Conread position: 412-683
Cow position: chr23:26836270-26836536 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 186
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 11, 162

Conread position: 432-586
Cow position: chr23:2020019-2020170 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 97, 0

Conread position: 433-643
Cow position: chr23:2782419-2782213 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 154
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 9, 37

Conread position: 446-683
Cow position: chr23:16615970-16615735 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 115

Conread position: 469-678
Cow position: chr23:29452270-29452060 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 169
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 9

Conread position: 470-678
Cow position: chr23:2765403-2765195 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 172
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 470-678
Cow position: chr23:33699185-33699389 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 142
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 23, 0

Conread position: 470-683
Cow position: chr23:22875623-22875423 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 167
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 59, 0

Conread position: 486-682
Cow position: chr23:3863013-3863208 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 32, 0

Show alignments to all cow chromosomes.