Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010062G02.5 |
| Conread position: | 1-631 |
| Cow position: | chr25:18028000-18027372 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 18 |
| Conread position: | 2-404 |
| Cow position: | chr25:18302403-18302817 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 133, 27 |
| Conread position: | 3-383 |
| Cow position: | chr25:18411656-18411283 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 141 |
| Conread position: | 5-682 |
| Cow position: | chr25:20493987-20494653 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 211 |
| Conread position: | 6-665 |
| Cow position: | chr25:22147123-22147782 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 497 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 45 |
| Conread position: | 6-682 |
| Cow position: | chr25:12759968-12759296 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 12 |
| Conread position: | 7-678 |
| Cow position: | chr25:18255729-18255072 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 210 |
| Conread position: | 8-364 |
| Cow position: | chr25:24171666-24172014 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 11-678 |
| Cow position: | chr25:17469060-17468402 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 122 |
| Conread position: | 11-678 |
| Cow position: | chr25:18060960-18060302 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 13-353 |
| Cow position: | chr25:17563268-17562945 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 241 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 13-507 |
| Cow position: | chr25:17560959-17560476 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 13-678 |
| Cow position: | chr25:11375711-11375048 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 523 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 209 |
| Conread position: | 13-678 |
| Cow position: | chr25:14015812-14016465 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 520 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 186 |
| Conread position: | 17-682 |
| Cow position: | chr25:18092663-18093314 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 18-284 |
| Cow position: | chr25:34014704-34014439 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 18-678 |
| Cow position: | chr25:17589902-17589254 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 394, 112 |
| Conread position: | 18-678 |
| Cow position: | chr25:18890373-18889714 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 575, 46 |
| Conread position: | 18-678 |
| Cow position: | chr25:20777257-20776602 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 480 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 273 |
| Conread position: | 18-678 |
| Cow position: | chr25:26921872-26922516 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 474 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 223 |
| Conread position: | 18-678 |
| Cow position: | chr25:32579624-32580265 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-678 |
| Cow position: | chr25:35362778-35362129 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-679 |
| Cow position: | chr25:26278918-26279561 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 597, 12 |
| Conread position: | 18-679 |
| Cow position: | chr25:34347350-34346715 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 475 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 655, 144 |
| Conread position: | 18-684 |
| Cow position: | chr25:13780677-13781337 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 199 |
| Conread position: | 18-684 |
| Cow position: | chr25:25506291-25506956 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 654, 426 |
| Conread position: | 19-542 |
| Cow position: | chr25:4761355-4760834 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 334 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 177, 48 |
| Conread position: | 19-684 |
| Cow position: | chr25:19288702-19288040 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 103 |
| Conread position: | 21-646 |
| Cow position: | chr25:20629222-20629834 (view UCSC Genome Browser custom track) |
| Alignm length: | 626 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 22-678 |
| Cow position: | chr25:19916734-19917384 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 29-678 |
| Cow position: | chr25:34656793-34656146 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 18 |
| Conread position: | 30-237 |
| Cow position: | chr25:12943784-12943578 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 197, 175 |
| Conread position: | 30-437 |
| Cow position: | chr25:26866876-26867272 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 310 |
| Conread position: | 32-677 |
| Cow position: | chr25:16232516-16231871 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 413 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 12, 19 |
| Conread position: | 32-683 |
| Cow position: | chr25:11933862-11933226 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 67 |
| Conread position: | 33-678 |
| Cow position: | chr25:8674583-8675216 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 49-678 |
| Cow position: | chr25:18276151-18275528 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 476 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 53 |
| Conread position: | 53-463 |
| Cow position: | chr25:18173014-18173449 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 56-526 |
| Cow position: | chr25:14483970-14483499 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 289 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 323, 86 |
| Conread position: | 63-424 |
| Cow position: | chr25:25118615-25118964 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 70-535 |
| Cow position: | chr25:33991364-33990902 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 7 |
| Conread position: | 99-684 |
| Cow position: | chr25:36240275-36240855 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 319, 32 |
| Conread position: | 102-651 |
| Cow position: | chr25:24218385-24217846 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 29 |
| Conread position: | 106-491 |
| Cow position: | chr25:28170285-28169901 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 10, 300 |
| Conread position: | 116-491 |
| Cow position: | chr25:610971-611333 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 112, 67 |
| Conread position: | 128-330 |
| Cow position: | chr25:33243606-33243809 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 21, 184 |
| Conread position: | 157-683 |
| Cow position: | chr25:28030840-28030313 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 332 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 32, 158 |
| Conread position: | 192-583 |
| Cow position: | chr25:39560463-39560093 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 203-669 |
| Cow position: | chr25:17877933-17877484 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 93, 10 |
| Conread position: | 230-678 |
| Cow position: | chr25:12942847-12942399 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 445, 11 |
| Conread position: | 266-657 |
| Cow position: | chr25:23345451-23345058 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 27 |
| Conread position: | 279-681 |
| Cow position: | chr25:33665967-33665570 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 96 |
| Conread position: | 295-679 |
| Cow position: | chr25:18231663-18232044 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 204, 229 |
| Conread position: | 297-586 |
| Cow position: | chr25:536874-536597 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 238, 37 |
| Conread position: | 310-678 |
| Cow position: | chr25:27022634-27022266 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 332-658 |
| Cow position: | chr25:18421623-18421950 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 238, 91 |
| Conread position: | 349-678 |
| Cow position: | chr25:18195127-18194798 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 357-677 |
| Cow position: | chr25:18645863-18645542 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 94, 135 |
| Conread position: | 372-537 |
| Cow position: | chr25:23388661-23388495 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 162, 0 |
| Conread position: | 379-624 |
| Cow position: | chr25:23850466-23850228 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 380-625 |
| Cow position: | chr25:3378751-3378511 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 125, 37 |
| Conread position: | 392-638 |
| Cow position: | chr25:33243844-33244080 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 412-678 |
| Cow position: | chr25:18303435-18303700 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 0 |
| Conread position: | 413-674 |
| Cow position: | chr25:9544100-9544357 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 423-679 |
| Cow position: | chr25:34014444-34014186 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 22, 142 |
| Conread position: | 534-667 |
| Cow position: | chr25:17560476-17560343 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 534-678 |
| Cow position: | chr25:6172059-6172203 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 568-678 |
| Cow position: | chr25:24659444-24659554 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.