Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010062G02.5 |
| Conread position: | 1-505 |
| Cow position: | chr26:11301448-11301935 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 121, 20 |
| Conread position: | 3-678 |
| Cow position: | chr26:19351867-19351192 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 518 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 307 |
| Conread position: | 5-415 |
| Cow position: | chr26:19535830-19536244 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 11, 25 |
| Conread position: | 6-586 |
| Cow position: | chr26:16904438-16905001 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 24 |
| Conread position: | 6-681 |
| Cow position: | chr26:25033617-25034287 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 17 |
| Conread position: | 8-417 |
| Cow position: | chr26:12665637-12666029 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 273 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 10, 108 |
| Conread position: | 9-674 |
| Cow position: | chr26:4605526-4604871 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 11-379 |
| Cow position: | chr26:23605255-23604878 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 63 |
| Conread position: | 13-207 |
| Cow position: | chr26:12655614-12655797 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 5, 35 |
| Conread position: | 13-212 |
| Cow position: | chr26:9846479-9846278 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 13-542 |
| Cow position: | chr26:20254731-20255239 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 13-674 |
| Cow position: | chr26:3691457-3692108 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 500 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 190 |
| Conread position: | 13-678 |
| Cow position: | chr26:12574740-12574087 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 524 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 208 |
| Conread position: | 13-683 |
| Cow position: | chr26:8283385-8282737 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 14 |
| Conread position: | 17-428 |
| Cow position: | chr26:3074195-3074594 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 258 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 394, 71 |
| Conread position: | 18-220 |
| Cow position: | chr26:19998149-19998351 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-346 |
| Cow position: | chr26:9112128-9112456 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-410 |
| Cow position: | chr26:6850512-6850121 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 8 |
| Conread position: | 18-678 |
| Cow position: | chr26:3031147-3030508 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 487 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 29 |
| Conread position: | 18-678 |
| Cow position: | chr26:8869539-8870203 (view UCSC Genome Browser custom track) |
| Alignm length: | 666 |
| Alignm identity: | 493 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 500, 312 |
| Conread position: | 18-678 |
| Cow position: | chr26:30782431-30783064 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 471 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 18-679 |
| Cow position: | chr26:17397269-17396608 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 99, 340 |
| Conread position: | 18-680 |
| Cow position: | chr26:18854757-18855412 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 509 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 658, 77 |
| Conread position: | 19-683 |
| Cow position: | chr26:15553587-15552961 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 428 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 176, 38 |
| Conread position: | 21-207 |
| Cow position: | chr26:24201287-24201473 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 21-670 |
| Cow position: | chr26:15145092-15144447 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 501 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 26 |
| Conread position: | 22-678 |
| Cow position: | chr26:12588895-12588244 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 507 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 100 |
| Conread position: | 30-284 |
| Cow position: | chr26:6516539-6516783 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 141, 31 |
| Conread position: | 30-683 |
| Cow position: | chr26:9563684-9563031 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 645, 483 |
| Conread position: | 32-678 |
| Cow position: | chr26:2352675-2352039 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 486 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 36-678 |
| Cow position: | chr26:11254378-11253735 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 36-679 |
| Cow position: | chr26:5674847-5675482 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 151, 208 |
| Conread position: | 60-678 |
| Cow position: | chr26:2198338-2198947 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 473 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 66-474 |
| Cow position: | chr26:11537122-11536719 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 10 |
| Conread position: | 103-329 |
| Cow position: | chr26:9850886-9850649 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 103-329 |
| Cow position: | chr26:9854352-9854115 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 16, 49 |
| Conread position: | 105-522 |
| Cow position: | chr26:5551522-5551939 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 24, 182 |
| Conread position: | 110-662 |
| Cow position: | chr26:20262603-20263155 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 61 |
| Conread position: | 132-683 |
| Cow position: | chr26:30589592-30589045 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 15 |
| Conread position: | 159-337 |
| Cow position: | chr26:6602009-6602188 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 130 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 199-678 |
| Cow position: | chr26:12656138-12656594 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 27 |
| Conread position: | 213-426 |
| Cow position: | chr26:9845755-9845542 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 207, 102 |
| Conread position: | 228-385 |
| Cow position: | chr26:12659818-12659661 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 241-684 |
| Cow position: | chr26:1602322-1601866 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 243-446 |
| Cow position: | chr26:21350263-21350465 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 248-669 |
| Cow position: | chr26:9118214-9118628 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 266 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 316-684 |
| Cow position: | chr26:11635977-11635619 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 73, 51 |
| Conread position: | 324-678 |
| Cow position: | chr26:8918818-8919171 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 348-680 |
| Cow position: | chr26:18852211-18852543 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 204 |
| Conread position: | 372-643 |
| Cow position: | chr26:23603751-23603481 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 372-683 |
| Cow position: | chr26:12666123-12666428 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 372-684 |
| Cow position: | chr26:9112753-9113066 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 378-659 |
| Cow position: | chr26:11285910-11286186 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 378-660 |
| Cow position: | chr26:9845555-9845275 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 391-543 |
| Cow position: | chr26:4806507-4806356 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 392-684 |
| Cow position: | chr26:9849890-9849599 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 392-684 |
| Cow position: | chr26:9853400-9853110 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 393-610 |
| Cow position: | chr26:4334181-4334398 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 399-679 |
| Cow position: | chr26:6849394-6849114 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 276, 58 |
| Conread position: | 433-680 |
| Cow position: | chr26:23043214-23043461 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 196, 191 |
| Conread position: | 539-672 |
| Cow position: | chr26:20255382-20255509 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 553-678 |
| Cow position: | chr26:4806365-4806240 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.