Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010062G02.5 |
| Conread position: | 2-678 |
| Cow position: | chr27:5910449-5911121 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 484 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 164 |
| Conread position: | 3-679 |
| Cow position: | chr27:26324397-26325075 (view UCSC Genome Browser custom track) |
| Alignm length: | 680 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 389 |
| Conread position: | 6-503 |
| Cow position: | chr27:21288625-21288154 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 316 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 12, 127 |
| Conread position: | 7-542 |
| Cow position: | chr27:28890321-28890847 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 108 |
| Conread position: | 11-675 |
| Cow position: | chr27:27051255-27051939 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 517 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 21 |
| Conread position: | 11-678 |
| Cow position: | chr27:15278474-15277815 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 515 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 301 |
| Conread position: | 11-678 |
| Cow position: | chr27:16438925-16439586 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 511 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 100 |
| Conread position: | 13-307 |
| Cow position: | chr27:25116846-25117131 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 5, 98 |
| Conread position: | 13-328 |
| Cow position: | chr27:13897789-13898100 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 13-469 |
| Cow position: | chr27:25999454-25999018 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 20 |
| Conread position: | 13-674 |
| Cow position: | chr27:892808-893461 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 491 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 32 |
| Conread position: | 13-684 |
| Cow position: | chr27:26556382-26555741 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 489 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 149 |
| Conread position: | 18-189 |
| Cow position: | chr27:16432070-16432242 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 98, 0 |
| Conread position: | 18-637 |
| Cow position: | chr27:2364350-2364968 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 468 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 613, 313 |
| Conread position: | 18-650 |
| Cow position: | chr27:23334763-23335409 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 469 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 529, 11 |
| Conread position: | 18-678 |
| Cow position: | chr27:15540927-15541587 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 503 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 18-678 |
| Cow position: | chr27:16034793-16034136 (view UCSC Genome Browser custom track) |
| Alignm length: | 661 |
| Alignm identity: | 505 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 18-679 |
| Cow position: | chr27:14460857-14460196 (view UCSC Genome Browser custom track) |
| Alignm length: | 663 |
| Alignm identity: | 498 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 657, 162 |
| Conread position: | 18-679 |
| Cow position: | chr27:27662493-27663155 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 346 |
| Conread position: | 29-678 |
| Cow position: | chr27:1208962-1209609 (view UCSC Genome Browser custom track) |
| Alignm length: | 650 |
| Alignm identity: | 496 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 0 |
| Conread position: | 30-453 |
| Cow position: | chr27:3996757-3996342 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 78 |
| Conread position: | 30-666 |
| Cow position: | chr27:25805266-25804650 (view UCSC Genome Browser custom track) |
| Alignm length: | 639 |
| Alignm identity: | 485 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 583, 25 |
| Conread position: | 30-678 |
| Cow position: | chr27:25002922-25002277 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 499 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 194 |
| Conread position: | 30-679 |
| Cow position: | chr27:9993580-9992943 (view UCSC Genome Browser custom track) |
| Alignm length: | 653 |
| Alignm identity: | 502 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 565, 19 |
| Conread position: | 51-678 |
| Cow position: | chr27:25160334-25160939 (view UCSC Genome Browser custom track) |
| Alignm length: | 634 |
| Alignm identity: | 391 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 126, 84 |
| Conread position: | 55-684 |
| Cow position: | chr27:6006642-6007267 (view UCSC Genome Browser custom track) |
| Alignm length: | 654 |
| Alignm identity: | 420 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 68, 176 |
| Conread position: | 70-610 |
| Cow position: | chr27:5906684-5907243 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 357 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 261, 31 |
| Conread position: | 87-556 |
| Cow position: | chr27:22746354-22745894 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 299 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 60, 98 |
| Conread position: | 104-476 |
| Cow position: | chr27:20138988-20138617 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 106-678 |
| Cow position: | chr27:10011156-10010606 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 343 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 99, 16 |
| Conread position: | 108-667 |
| Cow position: | chr27:26226992-26227535 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 537, 16 |
| Conread position: | 109-586 |
| Cow position: | chr27:5997039-5996587 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 312 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 409, 104 |
| Conread position: | 126-542 |
| Cow position: | chr27:28090058-28090467 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 103, 21 |
| Conread position: | 198-646 |
| Cow position: | chr27:26037439-26036982 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 151, 31 |
| Conread position: | 256-402 |
| Cow position: | chr27:8561425-8561574 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 278-665 |
| Cow position: | chr27:22316443-22316828 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 6 |
| Conread position: | 291-678 |
| Cow position: | chr27:16432296-16432674 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 292-678 |
| Cow position: | chr27:27753324-27752938 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 306-527 |
| Cow position: | chr27:7312034-7311817 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 63, 0 |
| Conread position: | 322-667 |
| Cow position: | chr27:29565472-29565130 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 213, 45 |
| Conread position: | 325-683 |
| Cow position: | chr27:18560290-18560645 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 194, 172 |
| Conread position: | 339-649 |
| Cow position: | chr27:26035136-26034827 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 184, 207 |
| Conread position: | 351-636 |
| Cow position: | chr27:27197438-27197169 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 93, 154 |
| Conread position: | 358-653 |
| Cow position: | chr27:15638417-15638124 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 446-675 |
| Cow position: | chr27:8561572-8561796 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 179 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 505-678 |
| Cow position: | chr27:28078533-28078705 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 34, 57 |
Show alignments to all cow chromosomes.