Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-540
Cow position:
Alignm length: 547
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 168

Conread position: 2-394
Cow position:
Alignm length: 395
Alignm identity: 269
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 16, 30

Conread position: 2-672
Cow position:
Alignm length: 671
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 2-684
Cow position:
Alignm length: 687
Alignm identity: 530
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 13

Conread position: 3-323
Cow position:
Alignm length: 327
Alignm identity: 213
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 28, 16

Conread position: 3-678
Cow position:
Alignm length: 680
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 111

Conread position: 6-301
Cow position:
Alignm length: 298
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 6-318
Cow position:
Alignm length: 315
Alignm identity: 205
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 289, 9

Conread position: 7-249
Cow position:
Alignm length: 246
Alignm identity: 173
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 102, 5

Conread position: 7-478
Cow position:
Alignm length: 473
Alignm identity: 302
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 11, 59

Conread position: 11-678
Cow position:
Alignm length: 669
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 33

Conread position: 11-678
Cow position:
Alignm length: 677
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 32

Conread position: 12-474
Cow position:
Alignm length: 481
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 206

Conread position: 13-340
Cow position:
Alignm length: 329
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 118

Conread position: 13-678
Cow position:
Alignm length: 669
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 281

Conread position: 13-684
Cow position:
Alignm length: 673
Alignm identity: 524
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 47

Conread position: 14-674
Cow position:
Alignm length: 674
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 219, 105

Conread position: 17-429
Cow position:
Alignm length: 426
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 177

Conread position: 17-489
Cow position:
Alignm length: 475
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 77

Conread position: 17-659
Cow position:
Alignm length: 660
Alignm identity: 416
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 104, 118

Conread position: 17-678
Cow position:
Alignm length: 670
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 14

Conread position: 18-152
Cow position:
Alignm length: 135
Alignm identity: 102
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 18-157
Cow position:
Alignm length: 141
Alignm identity: 105
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 98, 0

Conread position: 18-157
Cow position:
Alignm length: 140
Alignm identity: 102
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 18-160
Cow position:
Alignm length: 143
Alignm identity: 103
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 18-172
Cow position:
Alignm length: 156
Alignm identity: 120
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 25, 29

Conread position: 18-368
Cow position:
Alignm length: 351
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 0

Conread position: 18-368
Cow position:
Alignm length: 352
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 13

Conread position: 18-410
Cow position:
Alignm length: 393
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 291, 0

Conread position: 18-538
Cow position:
Alignm length: 521
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 0

Conread position: 18-641
Cow position:
Alignm length: 626
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 506, 77

Conread position: 18-652
Cow position:
Alignm length: 635
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 0

Conread position: 18-674
Cow position:
Alignm length: 658
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 501, 291

Conread position: 18-678
Cow position:
Alignm length: 664
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 83

Conread position: 18-678
Cow position:
Alignm length: 663
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 258, 113

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 349, 0

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 650

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 655, 223

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 78

Conread position: 18-679
Cow position:
Alignm length: 668
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 192

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 191

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 32

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 0

Conread position: 18-679
Cow position:
Alignm length: 667
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 527, 394

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 283

Conread position: 19-684
Cow position:
Alignm length: 667
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 656, 173

Conread position: 28-226
Cow position:
Alignm length: 199
Alignm identity: 145
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 182, 0

Conread position: 30-652
Cow position:
Alignm length: 625
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 329

Conread position: 30-671
Cow position:
Alignm length: 643
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 624, 195

Conread position: 30-678
Cow position:
Alignm length: 652
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 65

Conread position: 30-684
Cow position:
Alignm length: 658
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 189

Conread position: 33-679
Cow position:
Alignm length: 649
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 491, 165

Conread position: 33-684
Cow position:
Alignm length: 655
Alignm identity: 403
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 47, 56

Conread position: 37-678
Cow position:
Alignm length: 647
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 72

Conread position: 43-499
Cow position:
Alignm length: 460
Alignm identity: 288
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 24, 158

Conread position: 46-178
Cow position:
Alignm length: 133
Alignm identity: 103
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 48-679
Cow position:
Alignm length: 634
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 0

Conread position: 50-281
Cow position:
Alignm length: 232
Alignm identity: 160
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 58, 0

Conread position: 50-536
Cow position:
Alignm length: 487
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 59-678
Cow position:
Alignm length: 632
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 139

Conread position: 76-678
Cow position:
Alignm length: 603
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 89-678
Cow position:
Alignm length: 597
Alignm identity: 351
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 41, 118

Conread position: 103-683
Cow position:
Alignm length: 587
Alignm identity: 370
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 172, 19

Conread position: 126-487
Cow position:
Alignm length: 364
Alignm identity: 229
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 145, 66

Conread position: 131-313
Cow position:
Alignm length: 184
Alignm identity: 136
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 10, 71

Conread position: 131-637
Cow position:
Alignm length: 508
Alignm identity: 328
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 11, 7

Conread position: 136-659
Cow position:
Alignm length: 525
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 148

Conread position: 143-367
Cow position:
Alignm length: 226
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 0

Conread position: 146-679
Cow position:
Alignm length: 535
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 529, 414

Conread position: 147-519
Cow position:
Alignm length: 378
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 312, 238

Conread position: 148-380
Cow position:
Alignm length: 233
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 170-682
Cow position:
Alignm length: 518
Alignm identity: 230
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 191, 278

Conread position: 173-671
Cow position:
Alignm length: 501
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 62

Conread position: 177-329
Cow position:
Alignm length: 153
Alignm identity: 109
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 186-679
Cow position:
Alignm length: 496
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 23

Conread position: 199-674
Cow position:
Alignm length: 476
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 239, 0

Conread position: 199-684
Cow position:
Alignm length: 487
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 84

Conread position: 205-638
Cow position:
Alignm length: 436
Alignm identity: 284
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 226, 27

Conread position: 212-615
Cow position:
Alignm length: 406
Alignm identity: 264
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 105, 14

Conread position: 213-506
Cow position:
Alignm length: 302
Alignm identity: 205
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 26, 94

Conread position: 219-679
Cow position:
Alignm length: 463
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 339, 10

Conread position: 228-402
Cow position:
Alignm length: 176
Alignm identity: 125
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 42, 82

Conread position: 245-670
Cow position:
Alignm length: 439
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 0

Conread position: 256-678
Cow position:
Alignm length: 423
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 270-470
Cow position:
Alignm length: 201
Alignm identity: 152
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 152, 0

Conread position: 273-678
Cow position:
Alignm length: 406
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 377, 0

Conread position: 312-658
Cow position:
Alignm length: 349
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 35

Conread position: 315-542
Cow position:
Alignm length: 228
Alignm identity: 152
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 323-682
Cow position:
Alignm length: 364
Alignm identity: 248
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 122, 25

Conread position: 348-671
Cow position:
Alignm length: 325
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 60

Conread position: 351-678
Cow position:
Alignm length: 330
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 233, 5

Conread position: 358-671
Cow position:
Alignm length: 315
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 96

Conread position: 358-679
Cow position:
Alignm length: 323
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 317, 0

Conread position: 377-679
Cow position:
Alignm length: 304
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 298, 0

Conread position: 378-579
Cow position:
Alignm length: 202
Alignm identity: 143
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 98, 0

Conread position: 378-652
Cow position:
Alignm length: 278
Alignm identity: 192
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 53, 72

Conread position: 378-658
Cow position:
Alignm length: 286
Alignm identity: 185
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 144, 15

Conread position: 390-542
Cow position:
Alignm length: 155
Alignm identity: 112
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 133, 98

Conread position: 408-681
Cow position:
Alignm length: 274
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 412-658
Cow position:
Alignm length: 250
Alignm identity: 170
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 9, 177

Conread position: 412-665
Cow position:
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 412-684
Cow position:
Alignm length: 285
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 12

Conread position: 413-675
Cow position:
Alignm length: 263
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 415-683
Cow position:
Alignm length: 269
Alignm identity: 185
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 159, 0

Conread position: 425-678
Cow position:
Alignm length: 261
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 177

Conread position: 443-684
Cow position:
Alignm length: 244
Alignm identity: 179
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 88, 0

Conread position: 459-678
Cow position:
Alignm length: 220
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 459-682
Cow position:
Alignm length: 233
Alignm identity: 156
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 68, 31

Conread position: 464-643
Cow position:
Alignm length: 182
Alignm identity: 141
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 151, 12

Conread position: 466-678
Cow position:
Alignm length: 213
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 0

Conread position: 477-637
Cow position:
Alignm length: 169
Alignm identity: 123
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 70, 0

Conread position: 480-678
Cow position:
Alignm length: 200
Alignm identity: 160
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 195, 81

Conread position: 480-684
Cow position:
Alignm length: 205
Alignm identity: 166
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 485-683
Cow position:
Alignm length: 200
Alignm identity: 138
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 137, 103

Conread position: 502-678
Cow position:
Alignm length: 178
Alignm identity: 149
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 97

Conread position: 504-679
Cow position:
Alignm length: 177
Alignm identity: 130
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 171, 84

Conread position: 513-678
Cow position:
Alignm length: 166
Alignm identity: 138
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 514-678
Cow position:
Alignm length: 165
Alignm identity: 138
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 536-679
Cow position:
Alignm length: 145
Alignm identity: 116
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 139, 0

Conread position: 549-678
Cow position:
Alignm length: 130
Alignm identity: 114
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 587-678
Cow position:
Alignm length: 92
Alignm identity: 79
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 10, 0

Show alignments to all cow chromosomes.