Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 2-678
Cow position:
Alignm length: 680
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 16

Conread position: 2-678
Cow position:
Alignm length: 679
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 411, 50

Conread position: 3-677
Cow position:
Alignm length: 677
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 167

Conread position: 6-508
Cow position:
Alignm length: 505
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 117

Conread position: 6-654
Cow position:
Alignm length: 649
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 6-678
Cow position:
Alignm length: 673
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 6-682
Cow position:
Alignm length: 683
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 7

Conread position: 7-442
Cow position:
Alignm length: 444
Alignm identity: 292
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 27, 53

Conread position: 8-279
Cow position:
Alignm length: 283
Alignm identity: 196
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 9, 95

Conread position: 11-226
Cow position:
Alignm length: 226
Alignm identity: 168
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 8, 0

Conread position: 13-365
Cow position:
Alignm length: 354
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 18

Conread position: 13-678
Cow position:
Alignm length: 669
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 40

Conread position: 13-683
Cow position:
Alignm length: 678
Alignm identity: 408
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 86, 45

Conread position: 13-684
Cow position:
Alignm length: 675
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 21

Conread position: 14-681
Cow position:
Alignm length: 677
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 7

Conread position: 15-235
Cow position:
Alignm length: 221
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 84, 0

Conread position: 15-248
Cow position:
Alignm length: 235
Alignm identity: 159
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 16, 11

Conread position: 17-527
Cow position:
Alignm length: 514
Alignm identity: 329
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 189, 41

Conread position: 17-678
Cow position:
Alignm length: 668
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 204, 61

Conread position: 18-201
Cow position:
Alignm length: 184
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 18-207
Cow position:
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 81, 0

Conread position: 18-252
Cow position:
Alignm length: 235
Alignm identity: 171
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 67, 0

Conread position: 18-302
Cow position:
Alignm length: 285
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-387
Cow position:
Alignm length: 371
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-452
Cow position:
Alignm length: 436
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 406

Conread position: 18-635
Cow position:
Alignm length: 621
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 104

Conread position: 18-658
Cow position:
Alignm length: 641
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 495, 0

Conread position: 18-665
Cow position:
Alignm length: 648
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 18-667
Cow position:
Alignm length: 650
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-675
Cow position:
Alignm length: 659
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 0

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 0

Conread position: 18-678
Cow position:
Alignm length: 676
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 494, 349

Conread position: 18-678
Cow position:
Alignm length: 674
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 119, 204

Conread position: 18-678
Cow position:
Alignm length: 661
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-678
Cow position:
Alignm length: 663
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 238, 57

Conread position: 18-678
Cow position:
Alignm length: 662
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 103

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 291

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 534

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 37

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 334

Conread position: 18-679
Cow position:
Alignm length: 681
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 366

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 394

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 476

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 116

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 0

Conread position: 18-679
Cow position:
Alignm length: 664
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 199

Conread position: 18-679
Cow position:
Alignm length: 663
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 249

Conread position: 19-207
Cow position:
Alignm length: 191
Alignm identity: 142
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 119, 0

Conread position: 19-679
Cow position:
Alignm length: 664
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 372

Conread position: 19-682
Cow position:
Alignm length: 668
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 35

Conread position: 19-683
Cow position:
Alignm length: 665
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 0

Conread position: 22-631
Cow position:
Alignm length: 612
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 8

Conread position: 23-678
Cow position:
Alignm length: 656
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 0

Conread position: 30-201
Cow position:
Alignm length: 172
Alignm identity: 133
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 30-226
Cow position:
Alignm length: 199
Alignm identity: 150
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 182, 0

Conread position: 30-604
Cow position:
Alignm length: 599
Alignm identity: 372
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 87, 103

Conread position: 30-635
Cow position:
Alignm length: 609
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 140, 66

Conread position: 30-638
Cow position:
Alignm length: 615
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 51

Conread position: 30-671
Cow position:
Alignm length: 642
Alignm identity: 477
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 0

Conread position: 30-678
Cow position:
Alignm length: 650
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 0

Conread position: 30-679
Cow position:
Alignm length: 653
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 0

Conread position: 30-684
Cow position:
Alignm length: 657
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 437, 22

Conread position: 33-619
Cow position:
Alignm length: 601
Alignm identity: 362
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 100, 160

Conread position: 38-512
Cow position:
Alignm length: 493
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 53

Conread position: 38-600
Cow position:
Alignm length: 572
Alignm identity: 359
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 41, 51

Conread position: 49-684
Cow position:
Alignm length: 636
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 0

Conread position: 50-599
Cow position:
Alignm length: 552
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 116, 9

Conread position: 50-684
Cow position:
Alignm length: 637
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 45

Conread position: 51-346
Cow position:
Alignm length: 297
Alignm identity: 200
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 160, 41

Conread position: 60-339
Cow position:
Alignm length: 281
Alignm identity: 195
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 134, 62

Conread position: 66-678
Cow position:
Alignm length: 615
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 87-682
Cow position:
Alignm length: 597
Alignm identity: 361
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 535, 44

Conread position: 96-664
Cow position:
Alignm length: 577
Alignm identity: 373
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 24, 10

Conread position: 96-678
Cow position:
Alignm length: 584
Alignm identity: 443
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 114

Conread position: 97-639
Cow position:
Alignm length: 548
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 37

Conread position: 102-677
Cow position:
Alignm length: 589
Alignm identity: 367
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 173, 29

Conread position: 103-589
Cow position:
Alignm length: 488
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 28

Conread position: 103-683
Cow position:
Alignm length: 609
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 19

Conread position: 113-388
Cow position:
Alignm length: 279
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 0

Conread position: 118-678
Cow position:
Alignm length: 561
Alignm identity: 457
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 135-460
Cow position:
Alignm length: 328
Alignm identity: 225
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 198, 173

Conread position: 148-384
Cow position:
Alignm length: 238
Alignm identity: 184
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 16

Conread position: 150-682
Cow position:
Alignm length: 539
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 131

Conread position: 159-678
Cow position:
Alignm length: 521
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 47

Conread position: 162-354
Cow position:
Alignm length: 195
Alignm identity: 140
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 65, 105

Conread position: 174-682
Cow position:
Alignm length: 510
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 501, 135

Conread position: 175-682
Cow position:
Alignm length: 510
Alignm identity: 337
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 105, 89

Conread position: 186-609
Cow position:
Alignm length: 434
Alignm identity: 286
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 120, 16

Conread position: 199-678
Cow position:
Alignm length: 481
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 14

Conread position: 199-679
Cow position:
Alignm length: 482
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 228

Conread position: 200-679
Cow position:
Alignm length: 483
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 42

Conread position: 213-423
Cow position:
Alignm length: 211
Alignm identity: 148
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 23, 0

Conread position: 219-683
Cow position:
Alignm length: 466
Alignm identity: 295
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 316, 189

Conread position: 229-633
Cow position:
Alignm length: 406
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 60

Conread position: 251-684
Cow position:
Alignm length: 445
Alignm identity: 254
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 227, 97

Conread position: 275-665
Cow position:
Alignm length: 392
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 0

Conread position: 276-684
Cow position:
Alignm length: 409
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 0

Conread position: 295-506
Cow position:
Alignm length: 213
Alignm identity: 144
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 64, 9

Conread position: 301-583
Cow position:
Alignm length: 285
Alignm identity: 183
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 41, 108

Conread position: 310-684
Cow position:
Alignm length: 376
Alignm identity: 264
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 247, 74

Conread position: 320-683
Cow position:
Alignm length: 370
Alignm identity: 244
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 21, 50

Conread position: 342-583
Cow position:
Alignm length: 244
Alignm identity: 180
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 14, 29

Conread position: 350-679
Cow position:
Alignm length: 331
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 0

Conread position: 351-683
Cow position:
Alignm length: 338
Alignm identity: 235
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 77, 151

Conread position: 353-683
Cow position:
Alignm length: 336
Alignm identity: 217
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 11, 60

Conread position: 358-683
Cow position:
Alignm length: 326
Alignm identity: 216
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 32, 0

Conread position: 359-678
Cow position:
Alignm length: 320
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 372-683
Cow position:
Alignm length: 314
Alignm identity: 204
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 48, 76

Conread position: 372-683
Cow position:
Alignm length: 312
Alignm identity: 213
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 18, 0

Conread position: 378-683
Cow position:
Alignm length: 309
Alignm identity: 195
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 128, 121

Conread position: 385-678
Cow position:
Alignm length: 294
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 429-572
Cow position:
Alignm length: 144
Alignm identity: 108
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 433-652
Cow position:
Alignm length: 225
Alignm identity: 152
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 90, 67

Conread position: 436-600
Cow position:
Alignm length: 168
Alignm identity: 130
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 89, 0

Conread position: 437-684
Cow position:
Alignm length: 250
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 95

Conread position: 444-678
Cow position:
Alignm length: 235
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 452-684
Cow position:
Alignm length: 233
Alignm identity: 163
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 54, 0

Conread position: 459-652
Cow position:
Alignm length: 194
Alignm identity: 143
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 43, 0

Conread position: 490-678
Cow position:
Alignm length: 190
Alignm identity: 156
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 0

Conread position: 495-678
Cow position:
Alignm length: 186
Alignm identity: 150
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 95, 47

Conread position: 500-684
Cow position:
Alignm length: 185
Alignm identity: 141
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 51, 0

Conread position: 517-679
Cow position:
Alignm length: 165
Alignm identity: 126
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 58, 0

Conread position: 521-678
Cow position:
Alignm length: 159
Alignm identity: 133
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 20, 0

Conread position: 521-678
Cow position:
Alignm length: 159
Alignm identity: 131
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 536-678
Cow position:
Alignm length: 143
Alignm identity: 120
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 50, 0

Conread position: 540-683
Cow position:
Alignm length: 147
Alignm identity: 116
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 65, 0

Show alignments to all cow chromosomes.