Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-389
Cow position: chr5:59144192-59144576 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 16

Conread position: 1-660
Cow position: chr5:24329707-24330341 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 32

Conread position: 1-678
Cow position: chr5:59481665-59482338 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 16

Conread position: 2-302
Cow position: chr5:18663656-18663957 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 181
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 17, 0

Conread position: 2-421
Cow position: chr5:4384640-4385055 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 43

Conread position: 2-544
Cow position: chr5:18665370-18665913 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 3-484
Cow position: chr5:23227670-23228147 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 144

Conread position: 3-678
Cow position: chr5:28006641-28007276 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 44

Conread position: 6-251
Cow position: chr5:23960692-23960451 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 11, 0

Conread position: 6-302
Cow position: chr5:34167492-34167769 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 74, 0

Conread position: 6-637
Cow position: chr5:58056319-58055708 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 404
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 80, 11

Conread position: 6-674
Cow position: chr5:10918215-10918876 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 0

Conread position: 6-674
Cow position: chr5:48809301-48808634 (view UCSC Genome Browser custom track)
Alignm length: 671
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 205

Conread position: 6-678
Cow position: chr5:45182679-45182018 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 446, 11

Conread position: 6-679
Cow position: chr5:2913862-2914535 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 604

Conread position: 6-683
Cow position: chr5:41530154-41529504 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 10

Conread position: 8-678
Cow position: chr5:9686990-9686342 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 5

Conread position: 10-465
Cow position: chr5:27569570-27570027 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 15

Conread position: 10-524
Cow position: chr5:58061404-58060909 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 325
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 8, 69

Conread position: 10-683
Cow position: chr5:36718008-36717352 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 426
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 85, 11

Conread position: 10-684
Cow position: chr5:39417032-39417699 (view UCSC Genome Browser custom track)
Alignm length: 688
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 16

Conread position: 11-299
Cow position: chr5:52804752-52805041 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 265

Conread position: 11-678
Cow position: chr5:39165380-39164715 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 517
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 200

Conread position: 11-678
Cow position: chr5:41551505-41550841 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 105

Conread position: 11-678
Cow position: chr5:45699699-45700351 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 19

Conread position: 11-678
Cow position: chr5:49181704-49182354 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 112

Conread position: 13-194
Cow position: chr5:23688051-23687868 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 132
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 13-267
Cow position: chr5:58747311-58747559 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 191
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 5, 101

Conread position: 13-353
Cow position: chr5:23716525-23716189 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 149

Conread position: 13-376
Cow position: chr5:12682081-12681725 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 106

Conread position: 13-386
Cow position: chr5:29454442-29454077 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 246
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 5, 49

Conread position: 13-678
Cow position: chr5:26769233-26769889 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 152

Conread position: 13-678
Cow position: chr5:28030913-28031562 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 123

Conread position: 13-678
Cow position: chr5:32733823-32733167 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 507
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 103

Conread position: 13-678
Cow position: chr5:34202371-34203020 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 17

Conread position: 13-678
Cow position: chr5:46644129-46644772 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 197

Conread position: 13-681
Cow position: chr5:32674308-32673652 (view UCSC Genome Browser custom track)
Alignm length: 673
Alignm identity: 520
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 132

Conread position: 13-683
Cow position: chr5:51162337-51162988 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 13

Conread position: 13-684
Cow position: chr5:56858282-56857630 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 101

Conread position: 17-215
Cow position: chr5:41963505-41963307 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 185, 26

Conread position: 17-281
Cow position: chr5:6519324-6519575 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 59, 0

Conread position: 17-386
Cow position: chr5:53614121-53614488 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 229
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 14, 10

Conread position: 17-416
Cow position: chr5:27488455-27488841 (view UCSC Genome Browser custom track)
Alignm length: 401
Alignm identity: 261
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 30, 92

Conread position: 17-640
Cow position: chr5:61273737-61273140 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 102

Conread position: 17-662
Cow position: chr5:63480442-63479810 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 91

Conread position: 17-678
Cow position: chr5:2530699-2531356 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 0

Conread position: 17-678
Cow position: chr5:29008786-29009438 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 576, 114

Conread position: 18-204
Cow position: chr5:42504184-42504367 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 133
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 18-298
Cow position: chr5:37755713-37755433 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 200
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 25, 29

Conread position: 18-308
Cow position: chr5:59282188-59282478 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-363
Cow position: chr5:35299489-35299834 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-384
Cow position: chr5:12644449-12644095 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 258
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 49, 184

Conread position: 18-486
Cow position: chr5:10844449-10843981 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-515
Cow position: chr5:53714682-53715176 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 0

Conread position: 18-542
Cow position: chr5:16104338-16103829 (view UCSC Genome Browser custom track)
Alignm length: 531
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 69

Conread position: 18-636
Cow position: chr5:1342370-1341755 (view UCSC Genome Browser custom track)
Alignm length: 621
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 205, 536

Conread position: 18-639
Cow position: chr5:6158767-6158152 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 31

Conread position: 18-643
Cow position: chr5:3504816-3504200 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 0

Conread position: 18-674
Cow position: chr5:7273292-7273909 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 18-675
Cow position: chr5:14379595-14380244 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-678
Cow position: chr5:10776822-10776178 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 490
Alignm E-value: 0
Alignm gaps (pig, cow): 658, 39

Conread position: 18-678
Cow position: chr5:27909842-27909187 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 0

Conread position: 18-678
Cow position: chr5:31706003-31706659 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 44

Conread position: 18-678
Cow position: chr5:47831667-47831028 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 18-678
Cow position: chr5:48468849-48468194 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 134

Conread position: 18-678
Cow position: chr5:49119852-49119196 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 0

Conread position: 18-678
Cow position: chr5:58195429-58196087 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 57

Conread position: 18-678
Cow position: chr5:59060045-59060703 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 196

Conread position: 18-679
Cow position: chr5:2430706-2430046 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 0

Conread position: 18-679
Cow position: chr5:3785237-3785872 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 33

Conread position: 18-679
Cow position: chr5:4068416-4069075 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 32

Conread position: 18-679
Cow position: chr5:24098073-24098736 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 0

Conread position: 18-679
Cow position: chr5:34696010-34696690 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 483
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 138

Conread position: 18-679
Cow position: chr5:55627430-55628073 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 187

Conread position: 18-679
Cow position: chr5:57483121-57482459 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 0

Conread position: 18-684
Cow position: chr5:26079793-26079127 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 19-678
Cow position: chr5:46663432-46664089 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 105

Conread position: 19-679
Cow position: chr5:416292-415635 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 485
Alignm E-value: 0
Alignm gaps (pig, cow): 656, 95

Conread position: 19-679
Cow position: chr5:30578752-30579409 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 656, 25

Conread position: 19-684
Cow position: chr5:14659662-14659012 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 80

Conread position: 20-680
Cow position: chr5:4019771-4019110 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 80

Conread position: 21-678
Cow position: chr5:24576342-24577000 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 92

Conread position: 21-678
Cow position: chr5:32771911-32772567 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 21-678
Cow position: chr5:46775521-46776165 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 487
Alignm E-value: 0
Alignm gaps (pig, cow): 192, 72

Conread position: 23-645
Cow position: chr5:26507890-26508488 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 247, 7

Conread position: 24-678
Cow position: chr5:53627327-53626677 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 11

Conread position: 30-293
Cow position: chr5:12185098-12185361 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 195
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 30-375
Cow position: chr5:29123355-29123019 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 228
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 16, 0

Conread position: 30-386
Cow position: chr5:27000640-27000973 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 230
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 25, 0

Conread position: 30-387
Cow position: chr5:30088269-30087927 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 236
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 34, 0

Conread position: 30-677
Cow position: chr5:46739144-46738500 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 28

Conread position: 30-678
Cow position: chr5:3963915-3964537 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 494, 65

Conread position: 30-678
Cow position: chr5:32945319-32945959 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 521
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 0

Conread position: 30-679
Cow position: chr5:37731783-37732433 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 0

Conread position: 30-679
Cow position: chr5:54793180-54792548 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 470
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 335

Conread position: 30-679
Cow position: chr5:64782579-64781931 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 639, 279

Conread position: 31-244
Cow position: chr5:10443762-10443555 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 91, 115

Conread position: 32-684
Cow position: chr5:43343805-43343180 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 401
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 10

Conread position: 33-497
Cow position: chr5:62761440-62761890 (view UCSC Genome Browser custom track)
Alignm length: 469
Alignm identity: 290
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 24, 13

Conread position: 33-656
Cow position: chr5:31102152-31101548 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 69

Conread position: 45-579
Cow position: chr5:55097238-55096726 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 336
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 245, 52

Conread position: 48-684
Cow position: chr5:29866257-29866893 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 402
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 88, 219

Conread position: 49-560
Cow position: chr5:57366547-57366057 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 362, 15

Conread position: 50-660
Cow position: chr5:26090373-26089765 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 53

Conread position: 51-368
Cow position: chr5:76124091-76123776 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 202
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 167, 23

Conread position: 53-684
Cow position: chr5:49593997-49593364 (view UCSC Genome Browser custom track)
Alignm length: 636
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 23

Conread position: 54-386
Cow position: chr5:28570160-28570488 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 225
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 44, 60

Conread position: 66-678
Cow position: chr5:54932744-54932133 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 328, 0

Conread position: 66-682
Cow position: chr5:59845308-59844716 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 393
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 73

Conread position: 72-438
Cow position: chr5:57518208-57517854 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 235
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 202, 149

Conread position: 72-666
Cow position: chr5:41933328-41932757 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 64

Conread position: 72-684
Cow position: chr5:27652508-27651891 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 5

Conread position: 75-652
Cow position: chr5:61020359-61019790 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 144

Conread position: 82-604
Cow position: chr5:49101130-49101645 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 351
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 393, 49

Conread position: 83-683
Cow position: chr5:14346884-14346289 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 193

Conread position: 88-678
Cow position: chr5:26054265-26054834 (view UCSC Genome Browser custom track)
Alignm length: 595
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 325, 34

Conread position: 89-675
Cow position: chr5:29042009-29042593 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 100-682
Cow position: chr5:28022675-28023242 (view UCSC Genome Browser custom track)
Alignm length: 587
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 92

Conread position: 100-683
Cow position: chr5:46659236-46659806 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 145, 20

Conread position: 101-509
Cow position: chr5:46005876-46005460 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 102-614
Cow position: chr5:34968636-34968130 (view UCSC Genome Browser custom track)
Alignm length: 517
Alignm identity: 310
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 266, 113

Conread position: 104-684
Cow position: chr5:46630913-46630350 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 0

Conread position: 106-433
Cow position: chr5:51771831-51771508 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 212, 116

Conread position: 107-678
Cow position: chr5:44458997-44459568 (view UCSC Genome Browser custom track)
Alignm length: 572
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 110-526
Cow position: chr5:6188093-6188494 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 12

Conread position: 112-658
Cow position: chr5:62412220-62412752 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 344
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 170, 18

Conread position: 119-683
Cow position: chr5:51861537-51861010 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 121-504
Cow position: chr5:27683228-27682859 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 127-276
Cow position: chr5:57976885-57977038 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 82, 0

Conread position: 136-644
Cow position: chr5:47073455-47073952 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 81

Conread position: 144-571
Cow position: chr5:25207187-25206762 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 65

Conread position: 147-489
Cow position: chr5:7811992-7811659 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 231
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 315, 64

Conread position: 153-684
Cow position: chr5:49518227-49518750 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 522, 56

Conread position: 175-684
Cow position: chr5:70601795-70602280 (view UCSC Genome Browser custom track)
Alignm length: 515
Alignm identity: 320
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 119, 31

Conread position: 176-378
Cow position: chr5:23767882-23768078 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 156
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 166, 103

Conread position: 187-683
Cow position: chr5:27038830-27039307 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 324
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 174, 17

Conread position: 199-430
Cow position: chr5:18653614-18653843 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 132
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 141, 0

Conread position: 203-683
Cow position: chr5:18843060-18843517 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 297
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 416, 169

Conread position: 206-678
Cow position: chr5:6589408-6588935 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 0

Conread position: 215-684
Cow position: chr5:41962612-41962147 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 218-667
Cow position: chr5:28335206-28334751 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 301
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 78, 72

Conread position: 230-577
Cow position: chr5:4088442-4088789 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 241-681
Cow position: chr5:25000999-25000558 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 135, 19

Conread position: 243-684
Cow position: chr5:58334935-58334505 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 281
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 10, 149

Conread position: 248-684
Cow position: chr5:26069058-26068638 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 142, 0

Conread position: 256-669
Cow position: chr5:39872082-39872477 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 262
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 30, 0

Conread position: 267-601
Cow position: chr5:58819960-58819626 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 278-684
Cow position: chr5:52433662-52434056 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 32

Conread position: 286-591
Cow position: chr5:5318063-5317759 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 134, 0

Conread position: 295-670
Cow position: chr5:51319543-51319175 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 255
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 126, 26

Conread position: 326-683
Cow position: chr5:18897727-18898085 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 235
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 5, 53

Conread position: 336-618
Cow position: chr5:32249796-32250070 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 191
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 52, 0

Conread position: 342-647
Cow position: chr5:23755872-23755565 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 62

Conread position: 343-678
Cow position: chr5:20972282-20971961 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 348-684
Cow position: chr5:62359535-62359872 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 221
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 59, 112

Conread position: 350-527
Cow position: chr5:23690923-23690749 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 126
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 74, 139

Conread position: 352-547
Cow position: chr5:52805126-52805320 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 160
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 0

Conread position: 363-542
Cow position: chr5:39247606-39247434 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 21, 0

Conread position: 363-630
Cow position: chr5:5786829-5786570 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 0

Conread position: 371-682
Cow position: chr5:31202839-31202539 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 216
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 276, 40

Conread position: 372-548
Cow position: chr5:27060465-27060293 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 141
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 86, 15

Conread position: 372-658
Cow position: chr5:72489107-72488818 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 191
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 78, 90

Conread position: 374-661
Cow position: chr5:49128997-49129288 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 45

Conread position: 374-678
Cow position: chr5:57977037-57977342 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 194

Conread position: 378-540
Cow position: chr5:21918165-21918324 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 119
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 119, 76

Conread position: 379-595
Cow position: chr5:18653827-18654047 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 160
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 0

Conread position: 379-667
Cow position: chr5:24108803-24108521 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 161, 42

Conread position: 384-682
Cow position: chr5:27001403-27001696 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 32

Conread position: 385-679
Cow position: chr5:73489769-73489474 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 171

Conread position: 387-682
Cow position: chr5:61316962-61317249 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 94, 58

Conread position: 392-666
Cow position: chr5:29436169-29435894 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 7

Conread position: 408-684
Cow position: chr5:27489063-27489338 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 0

Conread position: 429-683
Cow position: chr5:51771462-51771203 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 182
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 88, 175

Conread position: 432-683
Cow position: chr5:62848414-62848649 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 170
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 58, 0

Conread position: 440-678
Cow position: chr5:12644091-12643846 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 79

Conread position: 444-639
Cow position: chr5:17774189-17773994 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 159
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 444-678
Cow position: chr5:4385108-4385331 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 177
Alignm E-value: 4e-39
Alignm gaps (pig, cow): 23, 0

Conread position: 447-683
Cow position: chr5:67593342-67593574 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 162
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 220, 97

Conread position: 459-682
Cow position: chr5:41574695-41574915 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 155
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 65, 0

Conread position: 469-684
Cow position: chr5:47826273-47826059 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 150
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 62, 180

Conread position: 476-665
Cow position: chr5:76123696-76123509 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 157
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 0

Conread position: 480-678
Cow position: chr5:27570000-27570196 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 0

Conread position: 490-678
Cow position: chr5:10843522-10843334 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 155
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 504-678
Cow position: chr5:9042949-9043123 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 144
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 508-678
Cow position: chr5:23960399-23960230 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 142
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 5, 0

Conread position: 508-684
Cow position: chr5:18271523-18271697 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 100, 85

Conread position: 509-684
Cow position: chr5:27682828-27682651 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 106, 90

Conread position: 521-674
Cow position: chr5:25206763-25206603 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 129
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 23, 8

Conread position: 539-684
Cow position: chr5:27059178-27059033 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 539-684
Cow position: chr5:27060081-27059936 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 552-678
Cow position: chr5:18665953-18666079 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 109
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 554-669
Cow position: chr5:40053420-40053533 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 97
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 554-678
Cow position: chr5:6611972-6612096 (view UCSC Genome Browser custom track)
Alignm length: 125
Alignm identity: 106
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 559-678
Cow position: chr5:10482814-10482933 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 103
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 559-678
Cow position: chr5:18122502-18122383 (view UCSC Genome Browser custom track)
Alignm length: 120
Alignm identity: 101
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 572-678
Cow position: chr5:4089050-4089156 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 575-678
Cow position: chr5:35299835-35299938 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 93
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 576-678
Cow position: chr5:56145038-56144936 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 91
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.