Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-405
Cow position: chr6:10054158-10054567 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 246

Conread position: 6-386
Cow position: chr6:21686451-21686823 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 6-607
Cow position: chr6:57870446-57869847 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 462
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 11

Conread position: 6-670
Cow position: chr6:65880421-65881086 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 0

Conread position: 6-678
Cow position: chr6:26671300-26670631 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 497, 11

Conread position: 6-678
Cow position: chr6:35421000-35420379 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 478
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 18

Conread position: 7-381
Cow position: chr6:42564506-42564874 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 234
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 8, 0

Conread position: 7-586
Cow position: chr6:39161769-39162320 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 9

Conread position: 8-521
Cow position: chr6:52115819-52116322 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 24

Conread position: 8-667
Cow position: chr6:57010290-57009646 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 267, 67

Conread position: 11-157
Cow position: chr6:13276119-13276267 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 7, 21

Conread position: 11-275
Cow position: chr6:2401802-2402074 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 7, 191

Conread position: 11-523
Cow position: chr6:68362755-68362250 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 169

Conread position: 11-527
Cow position: chr6:6838241-6838730 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 331
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 20, 15

Conread position: 11-678
Cow position: chr6:10559078-10558433 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 46

Conread position: 11-678
Cow position: chr6:33388379-33389069 (view UCSC Genome Browser custom track)
Alignm length: 699
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 225

Conread position: 13-394
Cow position: chr6:40314473-40314845 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 78

Conread position: 13-433
Cow position: chr6:60384558-60384958 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 266
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 283, 122

Conread position: 13-634
Cow position: chr6:11278131-11277513 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 29

Conread position: 13-678
Cow position: chr6:19453495-19454142 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 518
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 34

Conread position: 13-678
Cow position: chr6:20561547-20560885 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 179

Conread position: 13-678
Cow position: chr6:30478661-30479326 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 119

Conread position: 13-678
Cow position: chr6:59919712-59919058 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 83

Conread position: 13-682
Cow position: chr6:35433103-35433761 (view UCSC Genome Browser custom track)
Alignm length: 679
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 158

Conread position: 13-684
Cow position: chr6:7180103-7179461 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 463
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 101

Conread position: 16-678
Cow position: chr6:65900343-65899674 (view UCSC Genome Browser custom track)
Alignm length: 683
Alignm identity: 469
Alignm E-value: 0
Alignm gaps (pig, cow): 390, 19

Conread position: 17-287
Cow position: chr6:25357242-25357509 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 152
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 107, 0

Conread position: 17-340
Cow position: chr6:12093286-12092973 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 0

Conread position: 17-527
Cow position: chr6:42723353-42722851 (view UCSC Genome Browser custom track)
Alignm length: 512
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 383, 143

Conread position: 17-609
Cow position: chr6:42926947-42927540 (view UCSC Genome Browser custom track)
Alignm length: 599
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 207

Conread position: 17-684
Cow position: chr6:38231846-38232510 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 516
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 104

Conread position: 18-202
Cow position: chr6:28106197-28106016 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 109, 0

Conread position: 18-226
Cow position: chr6:33459148-33459363 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 155
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 42, 123

Conread position: 18-250
Cow position: chr6:41757418-41757186 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 25, 29

Conread position: 18-251
Cow position: chr6:6935557-6935324 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 25, 29

Conread position: 18-365
Cow position: chr6:39907724-39908064 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-373
Cow position: chr6:45671837-45672187 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-393
Cow position: chr6:47043862-47043489 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 0

Conread position: 18-401
Cow position: chr6:40274827-40275209 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-416
Cow position: chr6:65909001-65909389 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 0

Conread position: 18-438
Cow position: chr6:1823678-1823264 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 18-457
Cow position: chr6:39437211-39437647 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 187, 0

Conread position: 18-625
Cow position: chr6:21971245-21971860 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 26

Conread position: 18-652
Cow position: chr6:28274556-28275183 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 18-670
Cow position: chr6:28062916-28063555 (view UCSC Genome Browser custom track)
Alignm length: 653
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-670
Cow position: chr6:65822564-65821907 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 12

Conread position: 18-671
Cow position: chr6:7141898-7141267 (view UCSC Genome Browser custom track)
Alignm length: 654
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-674
Cow position: chr6:24238615-24239288 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 208, 0

Conread position: 18-675
Cow position: chr6:58409340-58408688 (view UCSC Genome Browser custom track)
Alignm length: 658
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 0

Conread position: 18-678
Cow position: chr6:1405664-1405011 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 0

Conread position: 18-678
Cow position: chr6:2374279-2374927 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-678
Cow position: chr6:2554275-2554933 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 43

Conread position: 18-678
Cow position: chr6:6566180-6566832 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 361, 0

Conread position: 18-678
Cow position: chr6:13103627-13104286 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 43

Conread position: 18-678
Cow position: chr6:13943481-13944136 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 192

Conread position: 18-678
Cow position: chr6:17598714-17598052 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 196

Conread position: 18-678
Cow position: chr6:27169144-27169808 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 324, 309

Conread position: 18-678
Cow position: chr6:28491946-28491287 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 454, 0

Conread position: 18-678
Cow position: chr6:29311063-29311718 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 174, 0

Conread position: 18-678
Cow position: chr6:34126919-34127580 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 366, 223

Conread position: 18-678
Cow position: chr6:43617283-43617942 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 391

Conread position: 18-678
Cow position: chr6:68026349-68027019 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 212

Conread position: 18-679
Cow position: chr6:913200-913882 (view UCSC Genome Browser custom track)
Alignm length: 687
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 335, 95

Conread position: 18-679
Cow position: chr6:3488824-3488170 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 488
Alignm E-value: 0
Alignm gaps (pig, cow): 507, 125

Conread position: 18-679
Cow position: chr6:8201300-8201966 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 504
Alignm E-value: 0
Alignm gaps (pig, cow): 489, 275

Conread position: 18-679
Cow position: chr6:8761733-8761076 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 371

Conread position: 18-679
Cow position: chr6:30275613-30274950 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 37

Conread position: 18-679
Cow position: chr6:34893439-34892777 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 500, 26

Conread position: 18-679
Cow position: chr6:35877146-35876489 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 16

Conread position: 18-679
Cow position: chr6:55544759-55544098 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 348

Conread position: 18-679
Cow position: chr6:65841157-65841813 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 93, 109

Conread position: 18-683
Cow position: chr6:3889919-3889245 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 119

Conread position: 18-684
Cow position: chr6:15141607-15140946 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 479, 191

Conread position: 19-652
Cow position: chr6:5951667-5951045 (view UCSC Genome Browser custom track)
Alignm length: 634
Alignm identity: 472
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 19-678
Cow position: chr6:65927514-65928163 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 0

Conread position: 21-488
Cow position: chr6:52418107-52417658 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 299
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 10, 5

Conread position: 21-684
Cow position: chr6:15280971-15280318 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 9

Conread position: 23-365
Cow position: chr6:65007415-65007748 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 195

Conread position: 23-679
Cow position: chr6:36525615-36526275 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 415, 427

Conread position: 30-196
Cow position: chr6:52735984-52736147 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 65, 0

Conread position: 30-238
Cow position: chr6:51937-51729 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 157
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 30-504
Cow position: chr6:50497870-50497405 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 0

Conread position: 30-510
Cow position: chr6:11353316-11353800 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 91

Conread position: 30-611
Cow position: chr6:2955371-2954806 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 95

Conread position: 30-678
Cow position: chr6:27468838-27469474 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 0

Conread position: 30-679
Cow position: chr6:27530419-27529778 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 179

Conread position: 30-683
Cow position: chr6:17045643-17046288 (view UCSC Genome Browser custom track)
Alignm length: 656
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 180

Conread position: 30-684
Cow position: chr6:701533-702184 (view UCSC Genome Browser custom track)
Alignm length: 659
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 227, 282

Conread position: 33-424
Cow position: chr6:42360086-42359707 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 260
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 186, 75

Conread position: 33-658
Cow position: chr6:34024429-34025011 (view UCSC Genome Browser custom track)
Alignm length: 627
Alignm identity: 390
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 371, 33

Conread position: 33-659
Cow position: chr6:66231398-66232003 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 455
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 18

Conread position: 33-679
Cow position: chr6:3278367-3277721 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 642, 16

Conread position: 34-391
Cow position: chr6:6476869-6476514 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 186, 110

Conread position: 35-683
Cow position: chr6:20650953-20650307 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 394
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 128, 35

Conread position: 36-252
Cow position: chr6:43795123-43794907 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 149
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 42-382
Cow position: chr6:50597421-50597742 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 221
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 102, 0

Conread position: 46-192
Cow position: chr6:21836505-21836358 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 70, 51

Conread position: 46-678
Cow position: chr6:331877-331242 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 239

Conread position: 46-678
Cow position: chr6:44028646-44029266 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 48-678
Cow position: chr6:44150958-44150329 (view UCSC Genome Browser custom track)
Alignm length: 633
Alignm identity: 479
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 37

Conread position: 49-639
Cow position: chr6:28474308-28474890 (view UCSC Genome Browser custom track)
Alignm length: 597
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 106

Conread position: 49-681
Cow position: chr6:525857-526464 (view UCSC Genome Browser custom track)
Alignm length: 635
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 59

Conread position: 50-624
Cow position: chr6:44525151-44524595 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 210

Conread position: 52-683
Cow position: chr6:12528433-12529059 (view UCSC Genome Browser custom track)
Alignm length: 638
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 168

Conread position: 53-684
Cow position: chr6:34440726-34441353 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 385
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 124, 78

Conread position: 58-408
Cow position: chr6:13978130-13978478 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 341, 251

Conread position: 71-684
Cow position: chr6:34203133-34203737 (view UCSC Genome Browser custom track)
Alignm length: 624
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 63

Conread position: 105-682
Cow position: chr6:16672048-16672614 (view UCSC Genome Browser custom track)
Alignm length: 583
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 223, 29

Conread position: 106-679
Cow position: chr6:40554929-40554358 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 93

Conread position: 110-375
Cow position: chr6:52804076-52804332 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 179
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 110-530
Cow position: chr6:60746801-60746385 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 270
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 13, 43

Conread position: 115-682
Cow position: chr6:37115803-37116366 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 16

Conread position: 119-510
Cow position: chr6:10640798-10641185 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 98

Conread position: 123-684
Cow position: chr6:59741375-59740825 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 18

Conread position: 126-670
Cow position: chr6:41552704-41553229 (view UCSC Genome Browser custom track)
Alignm length: 552
Alignm identity: 379
Alignm E-value: 0
Alignm gaps (pig, cow): 217, 80

Conread position: 132-499
Cow position: chr6:2885905-2886256 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 0

Conread position: 134-684
Cow position: chr6:62396853-62397401 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 15

Conread position: 156-684
Cow position: chr6:37642105-37642614 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 81

Conread position: 158-682
Cow position: chr6:13317776-13317267 (view UCSC Genome Browser custom track)
Alignm length: 525
Alignm identity: 384
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 165-317
Cow position: chr6:7866870-7867022 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 174-575
Cow position: chr6:49520667-49520256 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 287
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 174, 24

Conread position: 178-684
Cow position: chr6:15476014-15476520 (view UCSC Genome Browser custom track)
Alignm length: 522
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 27

Conread position: 188-684
Cow position: chr6:1100848-1100354 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 147

Conread position: 189-683
Cow position: chr6:10630205-10630679 (view UCSC Genome Browser custom track)
Alignm length: 496
Alignm identity: 322
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 450, 161

Conread position: 191-675
Cow position: chr6:13276543-13277024 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 226

Conread position: 199-684
Cow position: chr6:33459612-33460096 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 370
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 192

Conread position: 201-586
Cow position: chr6:19338394-19338022 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 250
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 76, 89

Conread position: 206-678
Cow position: chr6:16051642-16052107 (view UCSC Genome Browser custom track)
Alignm length: 473
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 210-595
Cow position: chr6:17931884-17932258 (view UCSC Genome Browser custom track)
Alignm length: 388
Alignm identity: 250
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 77, 39

Conread position: 215-632
Cow position: chr6:48368158-48368556 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 198, 94

Conread position: 228-678
Cow position: chr6:13846825-13847259 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 0

Conread position: 236-683
Cow position: chr6:11402838-11403275 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 305
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 139, 83

Conread position: 248-678
Cow position: chr6:1412141-1411713 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 251-678
Cow position: chr6:43793957-43793527 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 44

Conread position: 270-678
Cow position: chr6:28106014-28105619 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 262, 66

Conread position: 275-533
Cow position: chr6:52692861-52693137 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 187
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 291-684
Cow position: chr6:14763385-14763003 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 252
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 103, 260

Conread position: 295-643
Cow position: chr6:17099850-17099508 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 236
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 35, 147

Conread position: 295-682
Cow position: chr6:32330948-32330563 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 326

Conread position: 298-684
Cow position: chr6:2323393-2323009 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 245
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 33, 169

Conread position: 310-684
Cow position: chr6:11770582-11770945 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 235
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 136, 150

Conread position: 311-662
Cow position: chr6:25214119-25214469 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 41

Conread position: 327-683
Cow position: chr6:32074859-32074503 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 244
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 114, 81

Conread position: 333-678
Cow position: chr6:7866869-7866524 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 342-665
Cow position: chr6:64715122-64715443 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 0

Conread position: 345-684
Cow position: chr6:60170473-60170133 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 228
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 252, 324

Conread position: 348-670
Cow position: chr6:66539709-66540010 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 216
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 27, 65

Conread position: 352-647
Cow position: chr6:33900724-33900426 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 0

Conread position: 356-678
Cow position: chr6:3148910-3149231 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 0

Conread position: 358-591
Cow position: chr6:63198167-63197936 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 169
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 65, 0

Conread position: 363-678
Cow position: chr6:39908441-39908754 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 115

Conread position: 365-671
Cow position: chr6:51190412-51190719 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 16, 66

Conread position: 371-637
Cow position: chr6:31568879-31568619 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 194
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 53

Conread position: 371-678
Cow position: chr6:47043284-47042971 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 0

Conread position: 375-682
Cow position: chr6:25359430-25359742 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 214
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 36, 55

Conread position: 377-660
Cow position: chr6:12095472-12095195 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 39, 19

Conread position: 378-532
Cow position: chr6:52804453-52804606 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 111, 0

Conread position: 378-683
Cow position: chr6:15896504-15896209 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 204
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 70, 0

Conread position: 378-683
Cow position: chr6:35722291-35722594 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 205
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 278, 113

Conread position: 399-580
Cow position: chr6:12092946-12092763 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 145
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 29, 41

Conread position: 404-544
Cow position: chr6:65910740-65910880 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 111
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 33, 21

Conread position: 408-682
Cow position: chr6:6476525-6476258 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 0

Conread position: 408-684
Cow position: chr6:40315014-40315277 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 0

Conread position: 412-651
Cow position: chr6:36228979-36228742 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 158
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 11, 0

Conread position: 425-679
Cow position: chr6:1822645-1822411 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 196
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 250, 20

Conread position: 441-684
Cow position: chr6:6155677-6155916 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 176
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 57, 90

Conread position: 451-671
Cow position: chr6:40251663-40251883 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 182
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 466-684
Cow position: chr6:6847763-6847550 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 151
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 63, 0

Conread position: 501-684
Cow position: chr6:43608308-43608128 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 158, 0

Conread position: 510-678
Cow position: chr6:65007747-65007913 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 137
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 144, 44

Conread position: 520-678
Cow position: chr6:10641229-10641386 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 131
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 63, 0

Conread position: 542-684
Cow position: chr6:52805122-52805261 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 77, 45

Conread position: 550-646
Cow position: chr6:9738799-9738895 (view UCSC Genome Browser custom track)
Alignm length: 97
Alignm identity: 84
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 550-665
Cow position: chr6:58026857-58026971 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 95
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 551-678
Cow position: chr6:10499624-10499497 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 109
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 551-679
Cow position: chr6:39437647-39437776 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 553-678
Cow position: chr6:52693125-52693250 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 106
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 555-678
Cow position: chr6:12650845-12650722 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 99
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 555-678
Cow position: chr6:65914317-65914439 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 97
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 109, 0

Conread position: 572-678
Cow position: chr6:40275209-40275315 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 93
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 577-678
Cow position: chr6:24323255-24323154 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.