Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010062G02.5 | 
| Conread position: | 1-405 | 
| Cow position: | chr6:10054158-10054567 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 285 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 246 | 
| Conread position: | 6-386 | 
| Cow position: | chr6:21686451-21686823 (view UCSC Genome Browser custom track) | 
| Alignm length: | 381 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 202, 0 | 
| Conread position: | 6-607 | 
| Cow position: | chr6:57870446-57869847 (view UCSC Genome Browser custom track) | 
| Alignm length: | 604 | 
| Alignm identity: | 462 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 207, 11 | 
| Conread position: | 6-670 | 
| Cow position: | chr6:65880421-65881086 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 0 | 
| Conread position: | 6-678 | 
| Cow position: | chr6:26671300-26670631 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 497, 11 | 
| Conread position: | 6-678 | 
| Cow position: | chr6:35421000-35420379 (view UCSC Genome Browser custom track) | 
| Alignm length: | 674 | 
| Alignm identity: | 478 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 657, 18 | 
| Conread position: | 7-381 | 
| Cow position: | chr6:42564506-42564874 (view UCSC Genome Browser custom track) | 
| Alignm length: | 375 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 8, 0 | 
| Conread position: | 7-586 | 
| Cow position: | chr6:39161769-39162320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 378 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 114, 9 | 
| Conread position: | 8-521 | 
| Cow position: | chr6:52115819-52116322 (view UCSC Genome Browser custom track) | 
| Alignm length: | 518 | 
| Alignm identity: | 336 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 24 | 
| Conread position: | 8-667 | 
| Cow position: | chr6:57010290-57009646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 417 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 267, 67 | 
| Conread position: | 11-157 | 
| Cow position: | chr6:13276119-13276267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 150 | 
| Alignm identity: | 115 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 7, 21 | 
| Conread position: | 11-275 | 
| Cow position: | chr6:2401802-2402074 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 198 | 
| Alignm E-value: | 4.00001e-40 | 
| Alignm gaps (pig, cow): | 7, 191 | 
| Conread position: | 11-523 | 
| Cow position: | chr6:68362755-68362250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 514 | 
| Alignm identity: | 383 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 169 | 
| Conread position: | 11-527 | 
| Cow position: | chr6:6838241-6838730 (view UCSC Genome Browser custom track) | 
| Alignm length: | 519 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 2e-35 | 
| Alignm gaps (pig, cow): | 20, 15 | 
| Conread position: | 11-678 | 
| Cow position: | chr6:10559078-10558433 (view UCSC Genome Browser custom track) | 
| Alignm length: | 669 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 46 | 
| Conread position: | 11-678 | 
| Cow position: | chr6:33388379-33389069 (view UCSC Genome Browser custom track) | 
| Alignm length: | 699 | 
| Alignm identity: | 513 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 7, 225 | 
| Conread position: | 13-394 | 
| Cow position: | chr6:40314473-40314845 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 263 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 78 | 
| Conread position: | 13-433 | 
| Cow position: | chr6:60384558-60384958 (view UCSC Genome Browser custom track) | 
| Alignm length: | 422 | 
| Alignm identity: | 266 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 283, 122 | 
| Conread position: | 13-634 | 
| Cow position: | chr6:11278131-11277513 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 460 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 29 | 
| Conread position: | 13-678 | 
| Cow position: | chr6:19453495-19454142 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 518 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 34 | 
| Conread position: | 13-678 | 
| Cow position: | chr6:20561547-20560885 (view UCSC Genome Browser custom track) | 
| Alignm length: | 667 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 179 | 
| Conread position: | 13-678 | 
| Cow position: | chr6:30478661-30479326 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 119 | 
| Conread position: | 13-678 | 
| Cow position: | chr6:59919712-59919058 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 83 | 
| Conread position: | 13-682 | 
| Cow position: | chr6:35433103-35433761 (view UCSC Genome Browser custom track) | 
| Alignm length: | 679 | 
| Alignm identity: | 440 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 158 | 
| Conread position: | 13-684 | 
| Cow position: | chr6:7180103-7179461 (view UCSC Genome Browser custom track) | 
| Alignm length: | 675 | 
| Alignm identity: | 463 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 5, 101 | 
| Conread position: | 16-678 | 
| Cow position: | chr6:65900343-65899674 (view UCSC Genome Browser custom track) | 
| Alignm length: | 683 | 
| Alignm identity: | 469 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 390, 19 | 
| Conread position: | 17-287 | 
| Cow position: | chr6:25357242-25357509 (view UCSC Genome Browser custom track) | 
| Alignm length: | 271 | 
| Alignm identity: | 152 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 107, 0 | 
| Conread position: | 17-340 | 
| Cow position: | chr6:12093286-12092973 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 239 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 0 | 
| Conread position: | 17-527 | 
| Cow position: | chr6:42723353-42722851 (view UCSC Genome Browser custom track) | 
| Alignm length: | 512 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 383, 143 | 
| Conread position: | 17-609 | 
| Cow position: | chr6:42926947-42927540 (view UCSC Genome Browser custom track) | 
| Alignm length: | 599 | 
| Alignm identity: | 399 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 207 | 
| Conread position: | 17-684 | 
| Cow position: | chr6:38231846-38232510 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 516 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 104 | 
| Conread position: | 18-202 | 
| Cow position: | chr6:28106197-28106016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 4e-30 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 18-226 | 
| Cow position: | chr6:33459148-33459363 (view UCSC Genome Browser custom track) | 
| Alignm length: | 218 | 
| Alignm identity: | 155 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 42, 123 | 
| Conread position: | 18-250 | 
| Cow position: | chr6:41757418-41757186 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 25, 29 | 
| Conread position: | 18-251 | 
| Cow position: | chr6:6935557-6935324 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 25, 29 | 
| Conread position: | 18-365 | 
| Cow position: | chr6:39907724-39908064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 348 | 
| Alignm identity: | 256 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 18-373 | 
| Cow position: | chr6:45671837-45672187 (view UCSC Genome Browser custom track) | 
| Alignm length: | 357 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 29 | 
| Conread position: | 18-393 | 
| Cow position: | chr6:47043862-47043489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 376 | 
| Alignm identity: | 273 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 37, 0 | 
| Conread position: | 18-401 | 
| Cow position: | chr6:40274827-40275209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 240 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 29 | 
| Conread position: | 18-416 | 
| Cow position: | chr6:65909001-65909389 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 106, 0 | 
| Conread position: | 18-438 | 
| Cow position: | chr6:1823678-1823264 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 315 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 0 | 
| Conread position: | 18-457 | 
| Cow position: | chr6:39437211-39437647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 187, 0 | 
| Conread position: | 18-625 | 
| Cow position: | chr6:21971245-21971860 (view UCSC Genome Browser custom track) | 
| Alignm length: | 620 | 
| Alignm identity: | 450 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 442, 26 | 
| Conread position: | 18-652 | 
| Cow position: | chr6:28274556-28275183 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 467 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 171, 0 | 
| Conread position: | 18-670 | 
| Cow position: | chr6:28062916-28063555 (view UCSC Genome Browser custom track) | 
| Alignm length: | 653 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 18-670 | 
| Cow position: | chr6:65822564-65821907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 660 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 12 | 
| Conread position: | 18-671 | 
| Cow position: | chr6:7141898-7141267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 654 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 18-674 | 
| Cow position: | chr6:24238615-24239288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 674 | 
| Alignm identity: | 502 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 208, 0 | 
| Conread position: | 18-675 | 
| Cow position: | chr6:58409340-58408688 (view UCSC Genome Browser custom track) | 
| Alignm length: | 658 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 88, 0 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:1405664-1405011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 661 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:2374279-2374927 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 29 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:2554275-2554933 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 509 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 39, 43 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:6566180-6566832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 661 | 
| Alignm identity: | 495 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 361, 0 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:13103627-13104286 (view UCSC Genome Browser custom track) | 
| Alignm length: | 663 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 358, 43 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:13943481-13944136 (view UCSC Genome Browser custom track) | 
| Alignm length: | 664 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 192 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:17598714-17598052 (view UCSC Genome Browser custom track) | 
| Alignm length: | 667 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 196 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:27169144-27169808 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 324, 309 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:28491946-28491287 (view UCSC Genome Browser custom track) | 
| Alignm length: | 661 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 454, 0 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:29311063-29311718 (view UCSC Genome Browser custom track) | 
| Alignm length: | 661 | 
| Alignm identity: | 495 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 174, 0 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:34126919-34127580 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 366, 223 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:43617283-43617942 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 498 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 391 | 
| Conread position: | 18-678 | 
| Cow position: | chr6:68026349-68027019 (view UCSC Genome Browser custom track) | 
| Alignm length: | 672 | 
| Alignm identity: | 510 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 104, 212 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:913200-913882 (view UCSC Genome Browser custom track) | 
| Alignm length: | 687 | 
| Alignm identity: | 505 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 335, 95 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:3488824-3488170 (view UCSC Genome Browser custom track) | 
| Alignm length: | 665 | 
| Alignm identity: | 488 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 507, 125 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:8201300-8201966 (view UCSC Genome Browser custom track) | 
| Alignm length: | 669 | 
| Alignm identity: | 504 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 489, 275 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:8761733-8761076 (view UCSC Genome Browser custom track) | 
| Alignm length: | 663 | 
| Alignm identity: | 492 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 657, 371 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:30275613-30274950 (view UCSC Genome Browser custom track) | 
| Alignm length: | 667 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 196, 37 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:34893439-34892777 (view UCSC Genome Browser custom track) | 
| Alignm length: | 668 | 
| Alignm identity: | 501 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 500, 26 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:35877146-35876489 (view UCSC Genome Browser custom track) | 
| Alignm length: | 664 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 6, 16 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:55544759-55544098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 663 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 657, 348 | 
| Conread position: | 18-679 | 
| Cow position: | chr6:65841157-65841813 (view UCSC Genome Browser custom track) | 
| Alignm length: | 669 | 
| Alignm identity: | 491 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 93, 109 | 
| Conread position: | 18-683 | 
| Cow position: | chr6:3889919-3889245 (view UCSC Genome Browser custom track) | 
| Alignm length: | 677 | 
| Alignm identity: | 506 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 173, 119 | 
| Conread position: | 18-684 | 
| Cow position: | chr6:15141607-15140946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 670 | 
| Alignm identity: | 503 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 479, 191 | 
| Conread position: | 19-652 | 
| Cow position: | chr6:5951667-5951045 (view UCSC Genome Browser custom track) | 
| Alignm length: | 634 | 
| Alignm identity: | 472 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 80, 0 | 
| Conread position: | 19-678 | 
| Cow position: | chr6:65927514-65928163 (view UCSC Genome Browser custom track) | 
| Alignm length: | 660 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 21-488 | 
| Cow position: | chr6:52418107-52417658 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 299 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 10, 5 | 
| Conread position: | 21-684 | 
| Cow position: | chr6:15280971-15280318 (view UCSC Genome Browser custom track) | 
| Alignm length: | 666 | 
| Alignm identity: | 493 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 9 | 
| Conread position: | 23-365 | 
| Cow position: | chr6:65007415-65007748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 344 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 112, 195 | 
| Conread position: | 23-679 | 
| Cow position: | chr6:36525615-36526275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 662 | 
| Alignm identity: | 496 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 415, 427 | 
| Conread position: | 30-196 | 
| Cow position: | chr6:52735984-52736147 (view UCSC Genome Browser custom track) | 
| Alignm length: | 167 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 30-238 | 
| Cow position: | chr6:51937-51729 (view UCSC Genome Browser custom track) | 
| Alignm length: | 209 | 
| Alignm identity: | 157 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 30-504 | 
| Cow position: | chr6:50497870-50497405 (view UCSC Genome Browser custom track) | 
| Alignm length: | 475 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 30-510 | 
| Cow position: | chr6:11353316-11353800 (view UCSC Genome Browser custom track) | 
| Alignm length: | 490 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 91 | 
| Conread position: | 30-611 | 
| Cow position: | chr6:2955371-2954806 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 374 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 504, 95 | 
| Conread position: | 30-678 | 
| Cow position: | chr6:27468838-27469474 (view UCSC Genome Browser custom track) | 
| Alignm length: | 649 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 179, 0 | 
| Conread position: | 30-679 | 
| Cow position: | chr6:27530419-27529778 (view UCSC Genome Browser custom track) | 
| Alignm length: | 651 | 
| Alignm identity: | 494 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 645, 179 | 
| Conread position: | 30-683 | 
| Cow position: | chr6:17045643-17046288 (view UCSC Genome Browser custom track) | 
| Alignm length: | 656 | 
| Alignm identity: | 486 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 32, 180 | 
| Conread position: | 30-684 | 
| Cow position: | chr6:701533-702184 (view UCSC Genome Browser custom track) | 
| Alignm length: | 659 | 
| Alignm identity: | 497 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 227, 282 | 
| Conread position: | 33-424 | 
| Cow position: | chr6:42360086-42359707 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 186, 75 | 
| Conread position: | 33-658 | 
| Cow position: | chr6:34024429-34025011 (view UCSC Genome Browser custom track) | 
| Alignm length: | 627 | 
| Alignm identity: | 390 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 371, 33 | 
| Conread position: | 33-659 | 
| Cow position: | chr6:66231398-66232003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 631 | 
| Alignm identity: | 455 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 10, 18 | 
| Conread position: | 33-679 | 
| Cow position: | chr6:3278367-3277721 (view UCSC Genome Browser custom track) | 
| Alignm length: | 648 | 
| Alignm identity: | 499 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 642, 16 | 
| Conread position: | 34-391 | 
| Cow position: | chr6:6476869-6476514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 186, 110 | 
| Conread position: | 35-683 | 
| Cow position: | chr6:20650953-20650307 (view UCSC Genome Browser custom track) | 
| Alignm length: | 657 | 
| Alignm identity: | 394 | 
| Alignm E-value: | 8e-37 | 
| Alignm gaps (pig, cow): | 128, 35 | 
| Conread position: | 36-252 | 
| Cow position: | chr6:43795123-43794907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 217 | 
| Alignm identity: | 149 | 
| Alignm E-value: | 3e-29 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 42-382 | 
| Cow position: | chr6:50597421-50597742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 102, 0 | 
| Conread position: | 46-192 | 
| Cow position: | chr6:21836505-21836358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 149 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 70, 51 | 
| Conread position: | 46-678 | 
| Cow position: | chr6:331877-331242 (view UCSC Genome Browser custom track) | 
| Alignm length: | 640 | 
| Alignm identity: | 489 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 59, 239 | 
| Conread position: | 46-678 | 
| Cow position: | chr6:44028646-44029266 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 474 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 163, 0 | 
| Conread position: | 48-678 | 
| Cow position: | chr6:44150958-44150329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 633 | 
| Alignm identity: | 479 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 170, 37 | 
| Conread position: | 49-639 | 
| Cow position: | chr6:28474308-28474890 (view UCSC Genome Browser custom track) | 
| Alignm length: | 597 | 
| Alignm identity: | 398 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 106 | 
| Conread position: | 49-681 | 
| Cow position: | chr6:525857-526464 (view UCSC Genome Browser custom track) | 
| Alignm length: | 635 | 
| Alignm identity: | 414 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 172, 59 | 
| Conread position: | 50-624 | 
| Cow position: | chr6:44525151-44524595 (view UCSC Genome Browser custom track) | 
| Alignm length: | 577 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 225, 210 | 
| Conread position: | 52-683 | 
| Cow position: | chr6:12528433-12529059 (view UCSC Genome Browser custom track) | 
| Alignm length: | 638 | 
| Alignm identity: | 396 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 168 | 
| Conread position: | 53-684 | 
| Cow position: | chr6:34440726-34441353 (view UCSC Genome Browser custom track) | 
| Alignm length: | 639 | 
| Alignm identity: | 385 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 124, 78 | 
| Conread position: | 58-408 | 
| Cow position: | chr6:13978130-13978478 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 341, 251 | 
| Conread position: | 71-684 | 
| Cow position: | chr6:34203133-34203737 (view UCSC Genome Browser custom track) | 
| Alignm length: | 624 | 
| Alignm identity: | 413 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 63 | 
| Conread position: | 105-682 | 
| Cow position: | chr6:16672048-16672614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 583 | 
| Alignm identity: | 387 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 223, 29 | 
| Conread position: | 106-679 | 
| Cow position: | chr6:40554929-40554358 (view UCSC Genome Browser custom track) | 
| Alignm length: | 584 | 
| Alignm identity: | 431 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 29, 93 | 
| Conread position: | 110-375 | 
| Cow position: | chr6:52804076-52804332 (view UCSC Genome Browser custom track) | 
| Alignm length: | 266 | 
| Alignm identity: | 179 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 21, 0 | 
| Conread position: | 110-530 | 
| Cow position: | chr6:60746801-60746385 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 270 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 13, 43 | 
| Conread position: | 115-682 | 
| Cow position: | chr6:37115803-37116366 (view UCSC Genome Browser custom track) | 
| Alignm length: | 570 | 
| Alignm identity: | 446 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 94, 16 | 
| Conread position: | 119-510 | 
| Cow position: | chr6:10640798-10641185 (view UCSC Genome Browser custom track) | 
| Alignm length: | 394 | 
| Alignm identity: | 284 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 50, 98 | 
| Conread position: | 123-684 | 
| Cow position: | chr6:59741375-59740825 (view UCSC Genome Browser custom track) | 
| Alignm length: | 565 | 
| Alignm identity: | 403 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 226, 18 | 
| Conread position: | 126-670 | 
| Cow position: | chr6:41552704-41553229 (view UCSC Genome Browser custom track) | 
| Alignm length: | 552 | 
| Alignm identity: | 379 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 217, 80 | 
| Conread position: | 132-499 | 
| Cow position: | chr6:2885905-2886256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 255 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 72, 0 | 
| Conread position: | 134-684 | 
| Cow position: | chr6:62396853-62397401 (view UCSC Genome Browser custom track) | 
| Alignm length: | 564 | 
| Alignm identity: | 367 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 333, 15 | 
| Conread position: | 156-684 | 
| Cow position: | chr6:37642105-37642614 (view UCSC Genome Browser custom track) | 
| Alignm length: | 532 | 
| Alignm identity: | 365 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 81 | 
| Conread position: | 158-682 | 
| Cow position: | chr6:13317776-13317267 (view UCSC Genome Browser custom track) | 
| Alignm length: | 525 | 
| Alignm identity: | 384 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 51, 0 | 
| Conread position: | 165-317 | 
| Cow position: | chr6:7866870-7867022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 153 | 
| Alignm identity: | 112 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 174-575 | 
| Cow position: | chr6:49520667-49520256 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 287 | 
| Alignm E-value: | 2.00386e-43 | 
| Alignm gaps (pig, cow): | 174, 24 | 
| Conread position: | 178-684 | 
| Cow position: | chr6:15476014-15476520 (view UCSC Genome Browser custom track) | 
| Alignm length: | 522 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 27 | 
| Conread position: | 188-684 | 
| Cow position: | chr6:1100848-1100354 (view UCSC Genome Browser custom track) | 
| Alignm length: | 499 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 147 | 
| Conread position: | 189-683 | 
| Cow position: | chr6:10630205-10630679 (view UCSC Genome Browser custom track) | 
| Alignm length: | 496 | 
| Alignm identity: | 322 | 
| Alignm E-value: | 5.60519e-45 | 
| Alignm gaps (pig, cow): | 450, 161 | 
| Conread position: | 191-675 | 
| Cow position: | chr6:13276543-13277024 (view UCSC Genome Browser custom track) | 
| Alignm length: | 486 | 
| Alignm identity: | 368 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 273, 226 | 
| Conread position: | 199-684 | 
| Cow position: | chr6:33459612-33460096 (view UCSC Genome Browser custom track) | 
| Alignm length: | 487 | 
| Alignm identity: | 370 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 192 | 
| Conread position: | 201-586 | 
| Cow position: | chr6:19338394-19338022 (view UCSC Genome Browser custom track) | 
| Alignm length: | 389 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 76, 89 | 
| Conread position: | 206-678 | 
| Cow position: | chr6:16051642-16052107 (view UCSC Genome Browser custom track) | 
| Alignm length: | 473 | 
| Alignm identity: | 363 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 144, 0 | 
| Conread position: | 210-595 | 
| Cow position: | chr6:17931884-17932258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 388 | 
| Alignm identity: | 250 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 77, 39 | 
| Conread position: | 215-632 | 
| Cow position: | chr6:48368158-48368556 (view UCSC Genome Browser custom track) | 
| Alignm length: | 419 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 198, 94 | 
| Conread position: | 228-678 | 
| Cow position: | chr6:13846825-13847259 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 0 | 
| Conread position: | 236-683 | 
| Cow position: | chr6:11402838-11403275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 456 | 
| Alignm identity: | 305 | 
| Alignm E-value: | 1.96182e-44 | 
| Alignm gaps (pig, cow): | 139, 83 | 
| Conread position: | 248-678 | 
| Cow position: | chr6:1412141-1411713 (view UCSC Genome Browser custom track) | 
| Alignm length: | 431 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 108, 0 | 
| Conread position: | 251-678 | 
| Cow position: | chr6:43793957-43793527 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 328 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 273, 44 | 
| Conread position: | 270-678 | 
| Cow position: | chr6:28106014-28105619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 296 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 262, 66 | 
| Conread position: | 275-533 | 
| Cow position: | chr6:52692861-52693137 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 187 | 
| Alignm E-value: | 2e-26 | 
| Alignm gaps (pig, cow): | 77, 0 | 
| Conread position: | 291-684 | 
| Cow position: | chr6:14763385-14763003 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 252 | 
| Alignm E-value: | 3e-27 | 
| Alignm gaps (pig, cow): | 103, 260 | 
| Conread position: | 295-643 | 
| Cow position: | chr6:17099850-17099508 (view UCSC Genome Browser custom track) | 
| Alignm length: | 358 | 
| Alignm identity: | 236 | 
| Alignm E-value: | 1e-28 | 
| Alignm gaps (pig, cow): | 35, 147 | 
| Conread position: | 295-682 | 
| Cow position: | chr6:32330948-32330563 (view UCSC Genome Browser custom track) | 
| Alignm length: | 390 | 
| Alignm identity: | 286 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 16, 326 | 
| Conread position: | 298-684 | 
| Cow position: | chr6:2323393-2323009 (view UCSC Genome Browser custom track) | 
| Alignm length: | 395 | 
| Alignm identity: | 245 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 33, 169 | 
| Conread position: | 310-684 | 
| Cow position: | chr6:11770582-11770945 (view UCSC Genome Browser custom track) | 
| Alignm length: | 377 | 
| Alignm identity: | 235 | 
| Alignm E-value: | 2e-23 | 
| Alignm gaps (pig, cow): | 136, 150 | 
| Conread position: | 311-662 | 
| Cow position: | chr6:25214119-25214469 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 272 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 25, 41 | 
| Conread position: | 327-683 | 
| Cow position: | chr6:32074859-32074503 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 244 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 114, 81 | 
| Conread position: | 333-678 | 
| Cow position: | chr6:7866869-7866524 (view UCSC Genome Browser custom track) | 
| Alignm length: | 346 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 342-665 | 
| Cow position: | chr6:64715122-64715443 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 0 | 
| Conread position: | 345-684 | 
| Cow position: | chr6:60170473-60170133 (view UCSC Genome Browser custom track) | 
| Alignm length: | 342 | 
| Alignm identity: | 228 | 
| Alignm E-value: | 3.99931e-42 | 
| Alignm gaps (pig, cow): | 252, 324 | 
| Conread position: | 348-670 | 
| Cow position: | chr6:66539709-66540010 (view UCSC Genome Browser custom track) | 
| Alignm length: | 325 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 27, 65 | 
| Conread position: | 352-647 | 
| Cow position: | chr6:33900724-33900426 (view UCSC Genome Browser custom track) | 
| Alignm length: | 299 | 
| Alignm identity: | 217 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 0 | 
| Conread position: | 356-678 | 
| Cow position: | chr6:3148910-3149231 (view UCSC Genome Browser custom track) | 
| Alignm length: | 323 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 38, 0 | 
| Conread position: | 358-591 | 
| Cow position: | chr6:63198167-63197936 (view UCSC Genome Browser custom track) | 
| Alignm length: | 234 | 
| Alignm identity: | 169 | 
| Alignm E-value: | 3e-38 | 
| Alignm gaps (pig, cow): | 65, 0 | 
| Conread position: | 363-678 | 
| Cow position: | chr6:39908441-39908754 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 259 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 161, 115 | 
| Conread position: | 365-671 | 
| Cow position: | chr6:51190412-51190719 (view UCSC Genome Browser custom track) | 
| Alignm length: | 313 | 
| Alignm identity: | 219 | 
| Alignm E-value: | 9.99995e-41 | 
| Alignm gaps (pig, cow): | 16, 66 | 
| Conread position: | 371-637 | 
| Cow position: | chr6:31568879-31568619 (view UCSC Genome Browser custom track) | 
| Alignm length: | 269 | 
| Alignm identity: | 194 | 
| Alignm E-value: | 1e-39 | 
| Alignm gaps (pig, cow): | 40, 53 | 
| Conread position: | 371-678 | 
| Cow position: | chr6:47043284-47042971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 241 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 168, 0 | 
| Conread position: | 375-682 | 
| Cow position: | chr6:25359430-25359742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 316 | 
| Alignm identity: | 214 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 36, 55 | 
| Conread position: | 377-660 | 
| Cow position: | chr6:12095472-12095195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 285 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 39, 19 | 
| Conread position: | 378-532 | 
| Cow position: | chr6:52804453-52804606 (view UCSC Genome Browser custom track) | 
| Alignm length: | 155 | 
| Alignm identity: | 114 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 111, 0 | 
| Conread position: | 378-683 | 
| Cow position: | chr6:15896504-15896209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 306 | 
| Alignm identity: | 204 | 
| Alignm E-value: | 5e-32 | 
| Alignm gaps (pig, cow): | 70, 0 | 
| Conread position: | 378-683 | 
| Cow position: | chr6:35722291-35722594 (view UCSC Genome Browser custom track) | 
| Alignm length: | 307 | 
| Alignm identity: | 205 | 
| Alignm E-value: | 7e-36 | 
| Alignm gaps (pig, cow): | 278, 113 | 
| Conread position: | 399-580 | 
| Cow position: | chr6:12092946-12092763 (view UCSC Genome Browser custom track) | 
| Alignm length: | 185 | 
| Alignm identity: | 145 | 
| Alignm E-value: | 9e-38 | 
| Alignm gaps (pig, cow): | 29, 41 | 
| Conread position: | 404-544 | 
| Cow position: | chr6:65910740-65910880 (view UCSC Genome Browser custom track) | 
| Alignm length: | 142 | 
| Alignm identity: | 111 | 
| Alignm E-value: | 8e-27 | 
| Alignm gaps (pig, cow): | 33, 21 | 
| Conread position: | 408-682 | 
| Cow position: | chr6:6476525-6476258 (view UCSC Genome Browser custom track) | 
| Alignm length: | 275 | 
| Alignm identity: | 216 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 82, 0 | 
| Conread position: | 408-684 | 
| Cow position: | chr6:40315014-40315277 (view UCSC Genome Browser custom track) | 
| Alignm length: | 277 | 
| Alignm identity: | 208 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 20, 0 | 
| Conread position: | 412-651 | 
| Cow position: | chr6:36228979-36228742 (view UCSC Genome Browser custom track) | 
| Alignm length: | 240 | 
| Alignm identity: | 158 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 11, 0 | 
| Conread position: | 425-679 | 
| Cow position: | chr6:1822645-1822411 (view UCSC Genome Browser custom track) | 
| Alignm length: | 256 | 
| Alignm identity: | 196 | 
| Alignm E-value: | 4.00001e-41 | 
| Alignm gaps (pig, cow): | 250, 20 | 
| Conread position: | 441-684 | 
| Cow position: | chr6:6155677-6155916 (view UCSC Genome Browser custom track) | 
| Alignm length: | 246 | 
| Alignm identity: | 176 | 
| Alignm E-value: | 2e-34 | 
| Alignm gaps (pig, cow): | 57, 90 | 
| Conread position: | 451-671 | 
| Cow position: | chr6:40251663-40251883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 221 | 
| Alignm identity: | 182 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 466-684 | 
| Cow position: | chr6:6847763-6847550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 219 | 
| Alignm identity: | 151 | 
| Alignm E-value: | 2e-25 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 501-684 | 
| Cow position: | chr6:43608308-43608128 (view UCSC Genome Browser custom track) | 
| Alignm length: | 184 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 2e-32 | 
| Alignm gaps (pig, cow): | 158, 0 | 
| Conread position: | 510-678 | 
| Cow position: | chr6:65007747-65007913 (view UCSC Genome Browser custom track) | 
| Alignm length: | 170 | 
| Alignm identity: | 137 | 
| Alignm E-value: | 2e-36 | 
| Alignm gaps (pig, cow): | 144, 44 | 
| Conread position: | 520-678 | 
| Cow position: | chr6:10641229-10641386 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 131 | 
| Alignm E-value: | 1e-38 | 
| Alignm gaps (pig, cow): | 63, 0 | 
| Conread position: | 542-684 | 
| Cow position: | chr6:52805122-52805261 (view UCSC Genome Browser custom track) | 
| Alignm length: | 144 | 
| Alignm identity: | 108 | 
| Alignm E-value: | 4e-21 | 
| Alignm gaps (pig, cow): | 77, 45 | 
| Conread position: | 550-646 | 
| Cow position: | chr6:9738799-9738895 (view UCSC Genome Browser custom track) | 
| Alignm length: | 97 | 
| Alignm identity: | 84 | 
| Alignm E-value: | 2e-24 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 550-665 | 
| Cow position: | chr6:58026857-58026971 (view UCSC Genome Browser custom track) | 
| Alignm length: | 116 | 
| Alignm identity: | 95 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 14, 0 | 
| Conread position: | 551-678 | 
| Cow position: | chr6:10499624-10499497 (view UCSC Genome Browser custom track) | 
| Alignm length: | 128 | 
| Alignm identity: | 109 | 
| Alignm E-value: | 2e-33 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 551-679 | 
| Cow position: | chr6:39437647-39437776 (view UCSC Genome Browser custom track) | 
| Alignm length: | 130 | 
| Alignm identity: | 101 | 
| Alignm E-value: | 6e-24 | 
| Alignm gaps (pig, cow): | 124, 0 | 
| Conread position: | 553-678 | 
| Cow position: | chr6:52693125-52693250 (view UCSC Genome Browser custom track) | 
| Alignm length: | 126 | 
| Alignm identity: | 106 | 
| Alignm E-value: | 1e-31 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 555-678 | 
| Cow position: | chr6:12650845-12650722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 99 | 
| Alignm E-value: | 7e-26 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 555-678 | 
| Cow position: | chr6:65914317-65914439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 124 | 
| Alignm identity: | 97 | 
| Alignm E-value: | 5e-23 | 
| Alignm gaps (pig, cow): | 109, 0 | 
| Conread position: | 572-678 | 
| Cow position: | chr6:40275209-40275315 (view UCSC Genome Browser custom track) | 
| Alignm length: | 107 | 
| Alignm identity: | 93 | 
| Alignm E-value: | 3e-28 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 577-678 | 
| Cow position: | chr6:24323255-24323154 (view UCSC Genome Browser custom track) | 
| Alignm length: | 102 | 
| Alignm identity: | 87 | 
| Alignm E-value: | 7e-25 | 
| Alignm gaps (pig, cow): | 0, 0 | 
Show alignments to all cow chromosomes.
