Cow genome map

Conread name: Ss1.1-Utr1-UTR010062G02.5

Conread position: 1-683
Cow position: chr9:39992407-39993076 (view UCSC Genome Browser custom track)
Alignm length: 691
Alignm identity: 465
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 50

Conread position: 2-630
Cow position: chr9:1252486-1251867 (view UCSC Genome Browser custom track)
Alignm length: 630
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 19

Conread position: 2-632
Cow position: chr9:2051940-2052558 (view UCSC Genome Browser custom track)
Alignm length: 644
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 94

Conread position: 3-672
Cow position: chr9:59443336-59444000 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 138

Conread position: 3-683
Cow position: chr9:59174676-59173998 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 240

Conread position: 4-684
Cow position: chr9:3938303-3937663 (view UCSC Genome Browser custom track)
Alignm length: 684
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 25

Conread position: 6-236
Cow position: chr9:12401733-12401959 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 167
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 11, 0

Conread position: 6-261
Cow position: chr9:50789058-50789306 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 183
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 37, 11

Conread position: 6-281
Cow position: chr9:31776437-31776707 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 187
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 24, 38

Conread position: 6-336
Cow position: chr9:34107234-34106905 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 222
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 116, 242

Conread position: 6-435
Cow position: chr9:26712832-26712414 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 284
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 317, 208

Conread position: 6-645
Cow position: chr9:37163324-37162683 (view UCSC Genome Browser custom track)
Alignm length: 643
Alignm identity: 480
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 225

Conread position: 6-678
Cow position: chr9:781314-780648 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 505
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 11

Conread position: 6-678
Cow position: chr9:1076710-1076041 (view UCSC Genome Browser custom track)
Alignm length: 674
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 488, 11

Conread position: 6-678
Cow position: chr9:1996427-1995758 (view UCSC Genome Browser custom track)
Alignm length: 680
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 12

Conread position: 6-679
Cow position: chr9:6051554-6050890 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 52

Conread position: 6-679
Cow position: chr9:10321310-10321966 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 501
Alignm E-value: 0
Alignm gaps (pig, cow): 442, 14

Conread position: 7-661
Cow position: chr9:4984267-4984911 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 11

Conread position: 8-525
Cow position: chr9:2202708-2203201 (view UCSC Genome Browser custom track)
Alignm length: 520
Alignm identity: 336
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 265, 22

Conread position: 8-684
Cow position: chr9:35657458-35658107 (view UCSC Genome Browser custom track)
Alignm length: 681
Alignm identity: 453
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 13

Conread position: 11-658
Cow position: chr9:793015-792377 (view UCSC Genome Browser custom track)
Alignm length: 650
Alignm identity: 486
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 43

Conread position: 11-678
Cow position: chr9:3155533-3156179 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 121

Conread position: 11-678
Cow position: chr9:15072004-15072670 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 519
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 412

Conread position: 11-678
Cow position: chr9:28626539-28625885 (view UCSC Genome Browser custom track)
Alignm length: 670
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 121

Conread position: 11-678
Cow position: chr9:31020295-31020978 (view UCSC Genome Browser custom track)
Alignm length: 686
Alignm identity: 511
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 303

Conread position: 12-215
Cow position: chr9:651601-651393 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 149
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 121, 6

Conread position: 12-434
Cow position: chr9:22650646-22651057 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 259, 193

Conread position: 13-145
Cow position: chr9:8969552-8969419 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 101
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 5, 0

Conread position: 13-238
Cow position: chr9:3585794-3586019 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 5, 119

Conread position: 13-339
Cow position: chr9:18836278-18836596 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 5, 18

Conread position: 13-393
Cow position: chr9:1294325-1293944 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 154

Conread position: 13-460
Cow position: chr9:54360098-54360538 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 22

Conread position: 13-548
Cow position: chr9:2199603-2200133 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 0

Conread position: 13-630
Cow position: chr9:55616845-55617438 (view UCSC Genome Browser custom track)
Alignm length: 622
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 101

Conread position: 13-665
Cow position: chr9:3567362-3566709 (view UCSC Genome Browser custom track)
Alignm length: 655
Alignm identity: 489
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 404

Conread position: 13-678
Cow position: chr9:6757062-6757721 (view UCSC Genome Browser custom track)
Alignm length: 672
Alignm identity: 461
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 58

Conread position: 13-684
Cow position: chr9:26002624-26001991 (view UCSC Genome Browser custom track)
Alignm length: 677
Alignm identity: 426
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 5, 68

Conread position: 16-678
Cow position: chr9:131709-131033 (view UCSC Genome Browser custom track)
Alignm length: 682
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 28

Conread position: 16-679
Cow position: chr9:59483174-59482514 (view UCSC Genome Browser custom track)
Alignm length: 666
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 504, 190

Conread position: 17-376
Cow position: chr9:830055-829705 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 17-530
Cow position: chr9:831929-831427 (view UCSC Genome Browser custom track)
Alignm length: 514
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 0

Conread position: 17-575
Cow position: chr9:3868004-3867462 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 116

Conread position: 17-678
Cow position: chr9:10314877-10315523 (view UCSC Genome Browser custom track)
Alignm length: 667
Alignm identity: 510
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 32

Conread position: 17-678
Cow position: chr9:37130045-37129389 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 515
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 83

Conread position: 18-173
Cow position: chr9:10855696-10855852 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 44, 0

Conread position: 18-259
Cow position: chr9:3006775-3006536 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 169
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 231, 95

Conread position: 18-259
Cow position: chr9:33834776-33834535 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 180
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 25, 29

Conread position: 18-276
Cow position: chr9:60651965-60651709 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 190
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 0

Conread position: 18-292
Cow position: chr9:18510227-18509953 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 18-345
Cow position: chr9:2488466-2488148 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 77

Conread position: 18-381
Cow position: chr9:418034-417670 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 327, 344

Conread position: 18-388
Cow position: chr9:51183211-51182835 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 187

Conread position: 18-388
Cow position: chr9:59510098-59510478 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 251
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 110, 0

Conread position: 18-499
Cow position: chr9:6831047-6830580 (view UCSC Genome Browser custom track)
Alignm length: 483
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 191

Conread position: 18-580
Cow position: chr9:46626302-46625741 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 367, 0

Conread position: 18-615
Cow position: chr9:4672104-4672700 (view UCSC Genome Browser custom track)
Alignm length: 598
Alignm identity: 449
Alignm E-value: 0
Alignm gaps (pig, cow): 579, 0

Conread position: 18-658
Cow position: chr9:27034206-27034836 (view UCSC Genome Browser custom track)
Alignm length: 641
Alignm identity: 484
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 18-672
Cow position: chr9:3548673-3548023 (view UCSC Genome Browser custom track)
Alignm length: 657
Alignm identity: 500
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 44

Conread position: 18-678
Cow position: chr9:163993-163347 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-678
Cow position: chr9:17064890-17064227 (view UCSC Genome Browser custom track)
Alignm length: 675
Alignm identity: 497
Alignm E-value: 0
Alignm gaps (pig, cow): 476, 60

Conread position: 18-678
Cow position: chr9:25483369-25484029 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 498
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 567

Conread position: 18-678
Cow position: chr9:25755706-25755067 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 495
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 18-678
Cow position: chr9:27933591-27934245 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 496
Alignm E-value: 0
Alignm gaps (pig, cow): 490, 0

Conread position: 18-678
Cow position: chr9:28677472-28678129 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 231, 97

Conread position: 18-678
Cow position: chr9:31194670-31194010 (view UCSC Genome Browser custom track)
Alignm length: 662
Alignm identity: 503
Alignm E-value: 0
Alignm gaps (pig, cow): 358, 349

Conread position: 18-678
Cow position: chr9:34243101-34242441 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 509
Alignm E-value: 0
Alignm gaps (pig, cow): 392, 515

Conread position: 18-678
Cow position: chr9:36724000-36724658 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 512
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 29

Conread position: 18-679
Cow position: chr9:2170555-2171215 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 142

Conread position: 18-679
Cow position: chr9:7062609-7061934 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 0

Conread position: 18-679
Cow position: chr9:16175265-16175925 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 182

Conread position: 18-679
Cow position: chr9:47001706-47002347 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 26

Conread position: 18-679
Cow position: chr9:59535596-59536253 (view UCSC Genome Browser custom track)
Alignm length: 664
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 487, 164

Conread position: 18-679
Cow position: chr9:60278525-60277864 (view UCSC Genome Browser custom track)
Alignm length: 663
Alignm identity: 506
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 511

Conread position: 18-684
Cow position: chr9:16267858-16268534 (view UCSC Genome Browser custom track)
Alignm length: 678
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 220, 25

Conread position: 18-684
Cow position: chr9:37971710-37971047 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 502
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 406

Conread position: 18-684
Cow position: chr9:42309180-42309846 (view UCSC Genome Browser custom track)
Alignm length: 668
Alignm identity: 508
Alignm E-value: 0
Alignm gaps (pig, cow): 657, 251

Conread position: 18-684
Cow position: chr9:42568370-42569034 (view UCSC Genome Browser custom track)
Alignm length: 669
Alignm identity: 513
Alignm E-value: 0
Alignm gaps (pig, cow): 333, 191

Conread position: 19-678
Cow position: chr9:2185454-2186122 (view UCSC Genome Browser custom track)
Alignm length: 676
Alignm identity: 492
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 155

Conread position: 19-678
Cow position: chr9:30671868-30672524 (view UCSC Genome Browser custom track)
Alignm length: 660
Alignm identity: 491
Alignm E-value: 0
Alignm gaps (pig, cow): 290, 0

Conread position: 20-620
Cow position: chr9:223039-222449 (view UCSC Genome Browser custom track)
Alignm length: 606
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 417, 75

Conread position: 20-683
Cow position: chr9:2500796-2500133 (view UCSC Genome Browser custom track)
Alignm length: 665
Alignm identity: 499
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 209

Conread position: 21-679
Cow position: chr9:59456098-59455440 (view UCSC Genome Browser custom track)
Alignm length: 661
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 483, 9

Conread position: 22-430
Cow position: chr9:1979449-1979851 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 8

Conread position: 23-429
Cow position: chr9:9577106-9577510 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 271
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 8, 156

Conread position: 26-521
Cow position: chr9:870534-870047 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 316
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 5, 168

Conread position: 30-376
Cow position: chr9:32968249-32968596 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 201

Conread position: 30-390
Cow position: chr9:22702344-22701983 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 235
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 94, 154

Conread position: 30-493
Cow position: chr9:7002063-7002524 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 30-519
Cow position: chr9:15984000-15984478 (view UCSC Genome Browser custom track)
Alignm length: 495
Alignm identity: 316
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 46, 59

Conread position: 30-625
Cow position: chr9:28021056-28021654 (view UCSC Genome Browser custom track)
Alignm length: 600
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 132

Conread position: 30-665
Cow position: chr9:9012617-9013250 (view UCSC Genome Browser custom track)
Alignm length: 640
Alignm identity: 475
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 255

Conread position: 30-678
Cow position: chr9:45872863-45873505 (view UCSC Genome Browser custom track)
Alignm length: 649
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 0

Conread position: 30-679
Cow position: chr9:5003522-5004157 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 474
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 239

Conread position: 30-679
Cow position: chr9:29629238-29628589 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 493
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 572

Conread position: 30-679
Cow position: chr9:31807049-31807691 (view UCSC Genome Browser custom track)
Alignm length: 651
Alignm identity: 494
Alignm E-value: 0
Alignm gaps (pig, cow): 645, 179

Conread position: 33-590
Cow position: chr9:29028717-29028158 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 536, 0

Conread position: 40-486
Cow position: chr9:52290159-52290599 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 290
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 85, 193

Conread position: 48-366
Cow position: chr9:2065682-2065367 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 218
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 74, 87

Conread position: 49-472
Cow position: chr9:20310187-20309788 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 49-684
Cow position: chr9:2800990-2800394 (view UCSC Genome Browser custom track)
Alignm length: 642
Alignm identity: 409
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 101, 77

Conread position: 49-684
Cow position: chr9:3024641-3025266 (view UCSC Genome Browser custom track)
Alignm length: 648
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 260, 71

Conread position: 50-666
Cow position: chr9:20943260-20943854 (view UCSC Genome Browser custom track)
Alignm length: 620
Alignm identity: 384
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 361, 9

Conread position: 50-684
Cow position: chr9:4532020-4532654 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 473
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 343

Conread position: 51-670
Cow position: chr9:9331188-9330580 (view UCSC Genome Browser custom track)
Alignm length: 626
Alignm identity: 378
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 95, 13

Conread position: 52-682
Cow position: chr9:64158660-64159278 (view UCSC Genome Browser custom track)
Alignm length: 639
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 43

Conread position: 53-527
Cow position: chr9:23409754-23410210 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 312
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 68, 79

Conread position: 72-682
Cow position: chr9:3725830-3726441 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 315

Conread position: 78-406
Cow position: chr9:2697378-2697047 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 295

Conread position: 100-419
Cow position: chr9:13219899-13220222 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 101-609
Cow position: chr9:43215424-43214914 (view UCSC Genome Browser custom track)
Alignm length: 518
Alignm identity: 314
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 14, 171

Conread position: 110-652
Cow position: chr9:52570256-52570780 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 0

Conread position: 113-683
Cow position: chr9:5424588-5424023 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 62

Conread position: 125-681
Cow position: chr9:12845932-12845392 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 16

Conread position: 126-684
Cow position: chr9:64118432-64118980 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 205

Conread position: 147-476
Cow position: chr9:8969297-8968968 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 62

Conread position: 147-678
Cow position: chr9:25023675-25023145 (view UCSC Genome Browser custom track)
Alignm length: 532
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 0

Conread position: 148-684
Cow position: chr9:3356345-3355830 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 39

Conread position: 149-678
Cow position: chr9:9055438-9054909 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 176-679
Cow position: chr9:6111319-6110841 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 0

Conread position: 191-678
Cow position: chr9:3542480-3542963 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 202, 0

Conread position: 218-558
Cow position: chr9:59425382-59425712 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 230
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 173, 91

Conread position: 218-678
Cow position: chr9:37064099-37063647 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 169

Conread position: 228-678
Cow position: chr9:30826388-30826838 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 229-683
Cow position: chr9:3006537-3006084 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 241-678
Cow position: chr9:3586075-3586524 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 115, 229

Conread position: 248-683
Cow position: chr9:34992110-34992554 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 61

Conread position: 258-684
Cow position: chr9:3578733-3578339 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 283
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 37, 0

Conread position: 261-678
Cow position: chr9:50789417-50789834 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 412, 248

Conread position: 270-639
Cow position: chr9:4280212-4280573 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 8

Conread position: 275-682
Cow position: chr9:13477457-13477062 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 140

Conread position: 319-631
Cow position: chr9:2001605-2001301 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 214, 71

Conread position: 323-537
Cow position: chr9:417764-417549 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 144
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 82, 38

Conread position: 335-684
Cow position: chr9:18836823-18837173 (view UCSC Genome Browser custom track)
Alignm length: 355
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 144

Conread position: 347-670
Cow position: chr9:59510615-59510939 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 212
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 18, 86

Conread position: 358-676
Cow position: chr9:6973964-6974283 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 55, 48

Conread position: 363-527
Cow position: chr9:2064834-2064671 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 127
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 36, 0

Conread position: 363-658
Cow position: chr9:7012176-7012456 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 201
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 177, 24

Conread position: 369-679
Cow position: chr9:32968815-32969125 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 229

Conread position: 372-530
Cow position: chr9:829372-829216 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 141, 0

Conread position: 373-684
Cow position: chr9:51182343-51182032 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 378-683
Cow position: chr9:1979835-1980141 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 0

Conread position: 378-683
Cow position: chr9:12120431-12120745 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 124, 45

Conread position: 378-684
Cow position: chr9:62738021-62737724 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 198
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 32, 16

Conread position: 384-614
Cow position: chr9:22410250-22410023 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 162
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 24, 0

Conread position: 392-662
Cow position: chr9:43662830-43663085 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 202
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 83, 149

Conread position: 392-684
Cow position: chr9:1635422-1635703 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 203
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 27, 103

Conread position: 399-670
Cow position: chr9:3394107-3393841 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 191
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 215, 175

Conread position: 409-602
Cow position: chr9:34719857-34720053 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 155
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 112, 0

Conread position: 411-604
Cow position: chr9:2475179-2475369 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 413-678
Cow position: chr9:40191785-40191520 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 425-677
Cow position: chr9:26710578-26710337 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 171
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 237, 59

Conread position: 432-640
Cow position: chr9:18067309-18067101 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 170
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 432-678
Cow position: chr9:54361346-54361587 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 0

Conread position: 435-684
Cow position: chr9:64018545-64018297 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 0

Conread position: 439-684
Cow position: chr9:37095111-37095357 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 6, 0

Conread position: 440-678
Cow position: chr9:15683855-15684085 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 79, 12

Conread position: 445-684
Cow position: chr9:39040497-39040728 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 176
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 22, 34

Conread position: 477-679
Cow position: chr9:22653521-22653724 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 0

Conread position: 477-684
Cow position: chr9:44817814-44818021 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 480-678
Cow position: chr9:49177869-49177671 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 164
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 485-684
Cow position: chr9:20309568-20309369 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 161
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 60

Conread position: 495-679
Cow position: chr9:6830527-6830351 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 134
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 180, 118

Conread position: 497-678
Cow position: chr9:31064408-31064589 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 149
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 503-678
Cow position: chr9:8968968-8968801 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 135
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 125, 0

Conread position: 509-678
Cow position: chr9:2488144-2487974 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 138
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 10, 0

Conread position: 519-683
Cow position: chr9:18509806-18509641 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 128
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 156, 0

Conread position: 520-665
Cow position: chr9:7002519-7002664 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 522-678
Cow position: chr9:60651712-60651556 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 93
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 539-684
Cow position: chr9:3803059-3803204 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.