Cow genome map
| Conread name: | Ss1.1-Utr1-UTR010066D08.5 |
| Conread position: | 137-394 |
| Cow position: | chr5:19671829-19671569 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 137-394 |
| Cow position: | chr5:19768217-19768477 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 60, 51 |
| Conread position: | 189-393 |
| Cow position: | chr5:20103720-20103517 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 19, 48 |
| Conread position: | 236-380 |
| Cow position: | chr5:20233480-20233336 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 108 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-383 |
| Cow position: | chr5:20264356-20264209 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-383 |
| Cow position: | chr5:20285005-20284858 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-387 |
| Cow position: | chr5:20080115-20079964 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 236-392 |
| Cow position: | chr5:20123775-20123618 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 148, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:19891498-19891355 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:19903158-19903015 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:19974480-19974337 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:19990362-19990219 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:20009209-20009066 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:20026482-20026339 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:20062694-20062551 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:20303550-20303407 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-380 |
| Cow position: | chr5:20323034-20322891 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 122 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 376-583 |
| Cow position: | chr5:19902486-19902276 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 66, 87 |
| Conread position: | 376-591 |
| Cow position: | chr5:19852264-19852052 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 376-591 |
| Cow position: | chr5:19872573-19872361 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 376-591 |
| Cow position: | chr5:19889019-19888807 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 137, 75 |
| Conread position: | 376-591 |
| Cow position: | chr5:20008150-20007932 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 81, 66 |
| Conread position: | 376-591 |
| Cow position: | chr5:20025781-20025563 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 79, 66 |
| Conread position: | 376-591 |
| Cow position: | chr5:20060092-20059874 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 376-591 |
| Cow position: | chr5:20079378-20079160 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 376-591 |
| Cow position: | chr5:20101335-20101117 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 376-591 |
| Cow position: | chr5:20122385-20122167 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 376-591 |
| Cow position: | chr5:20283832-20283608 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 65, 151 |
| Conread position: | 376-591 |
| Cow position: | chr5:20321067-20320843 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 66, 0 |
| Conread position: | 376-591 |
| Cow position: | chr5:20378021-20377809 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 376-594 |
| Cow position: | chr5:20231571-20231344 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 376-594 |
| Cow position: | chr5:20336160-20335939 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 102, 80 |
| Conread position: | 376-597 |
| Cow position: | chr5:20301779-20301555 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 156 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 649-739 |
| Cow position: | chr5:20300098-20300008 (view UCSC Genome Browser custom track) |
| Alignm length: | 91 |
| Alignm identity: | 80 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 728-852 |
| Cow position: | chr5:20282320-20282194 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 736-852 |
| Cow position: | chr5:20024155-20024039 (view UCSC Genome Browser custom track) |
| Alignm length: | 117 |
| Alignm identity: | 92 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 745-852 |
| Cow position: | chr5:20376009-20375902 (view UCSC Genome Browser custom track) |
| Alignm length: | 108 |
| Alignm identity: | 89 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.