Cow genome map

Conread name: Ss1.1-Utr1-UTR01A020092.5

Conread position: 1-233
Cow position:
Alignm length: 239
Alignm identity: 178
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 78, 42

Conread position: 1-261
Cow position:
Alignm length: 266
Alignm identity: 199
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 78, 42

Conread position: 1-331
Cow position:
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-537
Cow position:
Alignm length: 551
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-555
Cow position:
Alignm length: 569
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-555
Cow position:
Alignm length: 571
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-558
Cow position:
Alignm length: 571
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 43

Conread position: 1-567
Cow position:
Alignm length: 580
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 43

Conread position: 1-567
Cow position:
Alignm length: 573
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 44

Conread position: 1-588
Cow position:
Alignm length: 601
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 37

Conread position: 1-588
Cow position:
Alignm length: 601
Alignm identity: 448
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-588
Cow position:
Alignm length: 601
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-603
Cow position:
Alignm length: 626
Alignm identity: 467
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 42

Conread position: 6-356
Cow position:
Alignm length: 356
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 38

Conread position: 6-524
Cow position:
Alignm length: 532
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 39

Conread position: 6-567
Cow position:
Alignm length: 576
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 40

Conread position: 13-205
Cow position:
Alignm length: 199
Alignm identity: 149
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 63, 30

Conread position: 13-244
Cow position:
Alignm length: 232
Alignm identity: 171
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 33, 0

Conread position: 13-250
Cow position:
Alignm length: 245
Alignm identity: 169
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 56, 30

Conread position: 13-463
Cow position:
Alignm length: 466
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-483
Cow position:
Alignm length: 486
Alignm identity: 305
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 66, 34

Conread position: 13-503
Cow position:
Alignm length: 505
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-538
Cow position:
Alignm length: 538
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 30

Conread position: 13-558
Cow position:
Alignm length: 570
Alignm identity: 368
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 65, 22

Conread position: 13-597
Cow position:
Alignm length: 604
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 32

Conread position: 13-609
Cow position:
Alignm length: 619
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-610
Cow position:
Alignm length: 613
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 30

Conread position: 14-259
Cow position:
Alignm length: 247
Alignm identity: 179
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 69, 31

Conread position: 14-545
Cow position:
Alignm length: 539
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 15-213
Cow position:
Alignm length: 205
Alignm identity: 141
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 32

Conread position: 15-412
Cow position:
Alignm length: 408
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 30

Conread position: 15-468
Cow position:
Alignm length: 464
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 28

Conread position: 15-534
Cow position:
Alignm length: 551
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 28

Conread position: 15-537
Cow position:
Alignm length: 527
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-538
Cow position:
Alignm length: 538
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 43

Conread position: 15-538
Cow position:
Alignm length: 533
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-538
Cow position:
Alignm length: 538
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 15-538
Cow position:
Alignm length: 531
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 24

Conread position: 15-538
Cow position:
Alignm length: 553
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-538
Cow position:
Alignm length: 541
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-539
Cow position:
Alignm length: 532
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 28

Conread position: 15-545
Cow position:
Alignm length: 542
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 32

Conread position: 15-545
Cow position:
Alignm length: 545
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position:
Alignm length: 542
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position:
Alignm length: 538
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 32

Conread position: 15-545
Cow position:
Alignm length: 541
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 16

Conread position: 15-545
Cow position:
Alignm length: 541
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 32

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-545
Cow position:
Alignm length: 541
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 29

Conread position: 15-557
Cow position:
Alignm length: 556
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 15-559
Cow position:
Alignm length: 559
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 30

Conread position: 17-568
Cow position:
Alignm length: 566
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 26

Conread position: 18-242
Cow position:
Alignm length: 229
Alignm identity: 161
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 63, 25

Conread position: 18-244
Cow position:
Alignm length: 227
Alignm identity: 153
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 27, 0

Conread position: 18-347
Cow position:
Alignm length: 342
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 29

Conread position: 18-443
Cow position:
Alignm length: 430
Alignm identity: 284
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 60, 21

Conread position: 18-514
Cow position:
Alignm length: 509
Alignm identity: 330
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 60, 21

Conread position: 18-526
Cow position:
Alignm length: 533
Alignm identity: 345
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 59, 17

Conread position: 19-434
Cow position:
Alignm length: 425
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 24

Conread position: 19-487
Cow position:
Alignm length: 474
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 20

Conread position: 19-538
Cow position:
Alignm length: 524
Alignm identity: 330
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 34, 42

Conread position: 21-516
Cow position:
Alignm length: 507
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 26

Conread position: 24-519
Cow position:
Alignm length: 509
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 21

Conread position: 24-609
Cow position:
Alignm length: 594
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 22

Conread position: 25-545
Cow position:
Alignm length: 535
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 22

Conread position: 40-539
Cow position:
Alignm length: 520
Alignm identity: 330
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 44, 38

Conread position: 40-567
Cow position:
Alignm length: 540
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 119

Conread position: 40-604
Cow position:
Alignm length: 590
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 39

Conread position: 43-401
Cow position:
Alignm length: 364
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 47, 35

Conread position: 58-260
Cow position:
Alignm length: 210
Alignm identity: 149
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 20, 150

Conread position: 60-595
Cow position:
Alignm length: 561
Alignm identity: 355
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 9, 64

Conread position: 71-291
Cow position:
Alignm length: 223
Alignm identity: 168
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 194, 219

Conread position: 72-523
Cow position:
Alignm length: 462
Alignm identity: 301
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 178, 294

Conread position: 72-540
Cow position:
Alignm length: 473
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 106

Conread position: 72-564
Cow position:
Alignm length: 495
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 403, 128

Conread position: 72-598
Cow position:
Alignm length: 543
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 103

Conread position: 73-568
Cow position:
Alignm length: 507
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 244

Conread position: 74-591
Cow position:
Alignm length: 526
Alignm identity: 359
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 11

Conread position: 75-497
Cow position:
Alignm length: 447
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 172

Conread position: 76-387
Cow position:
Alignm length: 316
Alignm identity: 218
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 211, 17

Conread position: 77-388
Cow position:
Alignm length: 317
Alignm identity: 223
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 190, 83

Conread position: 77-539
Cow position:
Alignm length: 474
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 70

Conread position: 77-610
Cow position:
Alignm length: 546
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 189

Conread position: 81-610
Cow position:
Alignm length: 534
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 206, 69

Conread position: 85-536
Cow position:
Alignm length: 455
Alignm identity: 280
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 56, 17

Conread position: 93-538
Cow position:
Alignm length: 457
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 0

Conread position: 94-557
Cow position:
Alignm length: 475
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 88

Conread position: 97-259
Cow position:
Alignm length: 163
Alignm identity: 122
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 20, 0

Conread position: 97-350
Cow position:
Alignm length: 258
Alignm identity: 186
Alignm E-value: 9e-37
Alignm gaps (pig, cow): 185, 136

Conread position: 107-567
Cow position:
Alignm length: 461
Alignm identity: 297
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 115-567
Cow position:
Alignm length: 461
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 350

Conread position: 124-559
Cow position:
Alignm length: 450
Alignm identity: 296
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 53, 280

Conread position: 149-555
Cow position:
Alignm length: 414
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 0

Conread position: 177-558
Cow position:
Alignm length: 390
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 30

Conread position: 178-604
Cow position:
Alignm length: 437
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 233

Conread position: 190-406
Cow position:
Alignm length: 227
Alignm identity: 165
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 64, 39

Conread position: 192-567
Cow position:
Alignm length: 385
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 163

Conread position: 195-550
Cow position:
Alignm length: 365
Alignm identity: 249
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 72, 248

Conread position: 196-609
Cow position:
Alignm length: 427
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 115

Conread position: 210-568
Cow position:
Alignm length: 377
Alignm identity: 248
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 38, 19

Conread position: 212-463
Cow position:
Alignm length: 259
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 98

Conread position: 213-406
Cow position:
Alignm length: 200
Alignm identity: 142
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 54, 0

Conread position: 218-338
Cow position:
Alignm length: 127
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 228-572
Cow position:
Alignm length: 351
Alignm identity: 239
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 43, 19

Conread position: 238-537
Cow position:
Alignm length: 320
Alignm identity: 231
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 29, 90

Conread position: 244-609
Cow position:
Alignm length: 377
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 131

Conread position: 248-545
Cow position:
Alignm length: 305
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 141

Conread position: 251-458
Cow position:
Alignm length: 213
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 31, 201

Conread position: 251-609
Cow position:
Alignm length: 371
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 327

Conread position: 276-537
Cow position:
Alignm length: 265
Alignm identity: 176
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 10, 102

Conread position: 277-537
Cow position:
Alignm length: 268
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 10, 30

Conread position: 295-594
Cow position:
Alignm length: 312
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 157

Conread position: 297-560
Cow position:
Alignm length: 270
Alignm identity: 181
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 70, 123

Conread position: 303-538
Cow position:
Alignm length: 237
Alignm identity: 167
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 85, 138

Conread position: 314-609
Cow position:
Alignm length: 303
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 0

Conread position: 321-571
Cow position:
Alignm length: 251
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 244, 0

Conread position: 330-545
Cow position:
Alignm length: 217
Alignm identity: 173
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 53

Conread position: 332-538
Cow position:
Alignm length: 211
Alignm identity: 161
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 56, 181

Conread position: 332-539
Cow position:
Alignm length: 210
Alignm identity: 147
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 52, 169

Conread position: 372-567
Cow position:
Alignm length: 197
Alignm identity: 147
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 13, 150

Conread position: 378-604
Cow position:
Alignm length: 236
Alignm identity: 160
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 155, 103

Conread position: 384-532
Cow position:
Alignm length: 150
Alignm identity: 119
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 144, 0

Conread position: 403-612
Cow position:
Alignm length: 216
Alignm identity: 162
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 122, 115

Conread position: 408-545
Cow position:
Alignm length: 138
Alignm identity: 112
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 426-534
Cow position:
Alignm length: 109
Alignm identity: 93
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 437-567
Cow position:
Alignm length: 132
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 116, 103

Show alignments to all cow chromosomes.