Cow genome map

Conread name: Ss1.1-Utr1-UTR01A020092.5

Conread position: 1-192
Cow position:
Alignm length: 198
Alignm identity: 135
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 1-519
Cow position:
Alignm length: 539
Alignm identity: 395
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-538
Cow position:
Alignm length: 544
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 44

Conread position: 1-555
Cow position:
Alignm length: 568
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position:
Alignm length: 580
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-567
Cow position:
Alignm length: 579
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-567
Cow position:
Alignm length: 580
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position:
Alignm length: 574
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-567
Cow position:
Alignm length: 578
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 1-567
Cow position:
Alignm length: 579
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position:
Alignm length: 580
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-567
Cow position:
Alignm length: 594
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position:
Alignm length: 580
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 44

Conread position: 1-568
Cow position:
Alignm length: 581
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 43

Conread position: 1-588
Cow position:
Alignm length: 599
Alignm identity: 444
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 6-538
Cow position:
Alignm length: 544
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 175

Conread position: 6-567
Cow position:
Alignm length: 576
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 37

Conread position: 6-567
Cow position:
Alignm length: 575
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 37

Conread position: 13-246
Cow position:
Alignm length: 239
Alignm identity: 180
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 65, 30

Conread position: 13-254
Cow position:
Alignm length: 248
Alignm identity: 178
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 60, 33

Conread position: 13-262
Cow position:
Alignm length: 252
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 227, 32

Conread position: 13-298
Cow position:
Alignm length: 302
Alignm identity: 221
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 66, 32

Conread position: 13-359
Cow position:
Alignm length: 350
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 70, 30

Conread position: 13-431
Cow position:
Alignm length: 428
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 248, 32

Conread position: 13-483
Cow position:
Alignm length: 488
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 30

Conread position: 13-502
Cow position:
Alignm length: 498
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-539
Cow position:
Alignm length: 538
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 31

Conread position: 13-552
Cow position:
Alignm length: 548
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 203, 32

Conread position: 13-555
Cow position:
Alignm length: 552
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 13-560
Cow position:
Alignm length: 561
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 11

Conread position: 13-567
Cow position:
Alignm length: 569
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-567
Cow position:
Alignm length: 568
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-567
Cow position:
Alignm length: 567
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-588
Cow position:
Alignm length: 588
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-610
Cow position:
Alignm length: 625
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 128

Conread position: 14-545
Cow position:
Alignm length: 544
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 14-545
Cow position:
Alignm length: 545
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 14-545
Cow position:
Alignm length: 543
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 29

Conread position: 15-286
Cow position:
Alignm length: 280
Alignm identity: 197
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 64, 28

Conread position: 15-421
Cow position:
Alignm length: 420
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-448
Cow position:
Alignm length: 447
Alignm identity: 275
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 146, 31

Conread position: 15-486
Cow position:
Alignm length: 485
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 15-538
Cow position:
Alignm length: 544
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 30

Conread position: 15-538
Cow position:
Alignm length: 541
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-538
Cow position:
Alignm length: 542
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 30

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-545
Cow position:
Alignm length: 539
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 28

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position:
Alignm length: 532
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 30

Conread position: 15-545
Cow position:
Alignm length: 541
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 34

Conread position: 15-545
Cow position:
Alignm length: 545
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position:
Alignm length: 541
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-545
Cow position:
Alignm length: 543
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 32

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position:
Alignm length: 542
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-557
Cow position:
Alignm length: 556
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 15-567
Cow position:
Alignm length: 561
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 28

Conread position: 15-599
Cow position:
Alignm length: 598
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 29

Conread position: 16-496
Cow position:
Alignm length: 493
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 9

Conread position: 16-545
Cow position:
Alignm length: 540
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 31

Conread position: 17-538
Cow position:
Alignm length: 530
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 30

Conread position: 17-588
Cow position:
Alignm length: 601
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 26

Conread position: 18-454
Cow position:
Alignm length: 450
Alignm identity: 288
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 55, 26

Conread position: 18-497
Cow position:
Alignm length: 485
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 18-528
Cow position:
Alignm length: 526
Alignm identity: 389
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 18-555
Cow position:
Alignm length: 548
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 25

Conread position: 18-558
Cow position:
Alignm length: 550
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 17

Conread position: 18-572
Cow position:
Alignm length: 559
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 25

Conread position: 18-603
Cow position:
Alignm length: 600
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 25

Conread position: 19-537
Cow position:
Alignm length: 524
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 26

Conread position: 20-226
Cow position:
Alignm length: 209
Alignm identity: 153
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 70, 26

Conread position: 20-252
Cow position:
Alignm length: 236
Alignm identity: 161
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 59, 26

Conread position: 22-567
Cow position:
Alignm length: 566
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 23

Conread position: 25-545
Cow position:
Alignm length: 534
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 22

Conread position: 27-551
Cow position:
Alignm length: 538
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 16

Conread position: 46-538
Cow position:
Alignm length: 509
Alignm identity: 318
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 51, 129

Conread position: 47-545
Cow position:
Alignm length: 503
Alignm identity: 372
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 210

Conread position: 49-369
Cow position:
Alignm length: 336
Alignm identity: 216
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 29, 329

Conread position: 49-499
Cow position:
Alignm length: 458
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 236, 30

Conread position: 59-557
Cow position:
Alignm length: 507
Alignm identity: 383
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 93

Conread position: 71-517
Cow position:
Alignm length: 471
Alignm identity: 304
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 172, 77

Conread position: 72-343
Cow position:
Alignm length: 273
Alignm identity: 183
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 214, 65

Conread position: 72-401
Cow position:
Alignm length: 335
Alignm identity: 213
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 109, 13

Conread position: 72-520
Cow position:
Alignm length: 452
Alignm identity: 278
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 89, 28

Conread position: 74-386
Cow position:
Alignm length: 320
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 174, 66

Conread position: 74-388
Cow position:
Alignm length: 319
Alignm identity: 216
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 193, 78

Conread position: 74-502
Cow position:
Alignm length: 436
Alignm identity: 279
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 210, 200

Conread position: 74-506
Cow position:
Alignm length: 441
Alignm identity: 285
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 191, 148

Conread position: 74-556
Cow position:
Alignm length: 499
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 239

Conread position: 75-380
Cow position:
Alignm length: 309
Alignm identity: 204
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 12, 72

Conread position: 76-361
Cow position:
Alignm length: 294
Alignm identity: 190
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 109, 82

Conread position: 79-604
Cow position:
Alignm length: 537
Alignm identity: 334
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 186, 123

Conread position: 82-604
Cow position:
Alignm length: 537
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 93

Conread position: 88-455
Cow position:
Alignm length: 375
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 179, 53

Conread position: 93-477
Cow position:
Alignm length: 389
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 130

Conread position: 101-372
Cow position:
Alignm length: 283
Alignm identity: 189
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 132, 137

Conread position: 107-418
Cow position:
Alignm length: 313
Alignm identity: 207
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 276, 143

Conread position: 107-418
Cow position:
Alignm length: 313
Alignm identity: 208
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 276, 143

Conread position: 110-604
Cow position:
Alignm length: 518
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 65

Conread position: 132-574
Cow position:
Alignm length: 462
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 219

Conread position: 142-298
Cow position:
Alignm length: 162
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 118, 84

Conread position: 154-545
Cow position:
Alignm length: 399
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 0

Conread position: 157-538
Cow position:
Alignm length: 395
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 141

Conread position: 161-383
Cow position:
Alignm length: 227
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 114, 87

Conread position: 162-387
Cow position:
Alignm length: 231
Alignm identity: 168
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 111, 59

Conread position: 166-487
Cow position:
Alignm length: 324
Alignm identity: 214
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 109, 83

Conread position: 168-494
Cow position:
Alignm length: 337
Alignm identity: 230
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 117, 80

Conread position: 181-545
Cow position:
Alignm length: 372
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 0

Conread position: 195-488
Cow position:
Alignm length: 303
Alignm identity: 186
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 69, 61

Conread position: 197-504
Cow position:
Alignm length: 316
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 295

Conread position: 212-517
Cow position:
Alignm length: 314
Alignm identity: 211
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 48, 17

Conread position: 230-471
Cow position:
Alignm length: 247
Alignm identity: 181
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 58, 35

Conread position: 235-545
Cow position:
Alignm length: 318
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 0

Conread position: 238-443
Cow position:
Alignm length: 211
Alignm identity: 148
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 44, 18

Conread position: 238-524
Cow position:
Alignm length: 288
Alignm identity: 209
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 221, 18

Conread position: 244-472
Cow position:
Alignm length: 237
Alignm identity: 174
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 18, 130

Conread position: 272-593
Cow position:
Alignm length: 324
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 183

Conread position: 276-539
Cow position:
Alignm length: 267
Alignm identity: 190
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 11, 129

Conread position: 281-537
Cow position:
Alignm length: 259
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 140

Conread position: 293-511
Cow position:
Alignm length: 220
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 139

Conread position: 303-512
Cow position:
Alignm length: 218
Alignm identity: 154
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 82, 103

Conread position: 307-545
Cow position:
Alignm length: 240
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 96

Conread position: 332-560
Cow position:
Alignm length: 237
Alignm identity: 173
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 47, 0

Conread position: 340-555
Cow position:
Alignm length: 218
Alignm identity: 166
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 45, 0

Conread position: 344-545
Cow position:
Alignm length: 203
Alignm identity: 154
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 349-521
Cow position:
Alignm length: 174
Alignm identity: 143
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 41, 0

Conread position: 353-555
Cow position:
Alignm length: 207
Alignm identity: 168
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 0

Conread position: 365-609
Cow position:
Alignm length: 252
Alignm identity: 186
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 25, 64

Conread position: 370-588
Cow position:
Alignm length: 225
Alignm identity: 169
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 15, 36

Conread position: 397-538
Cow position:
Alignm length: 142
Alignm identity: 116
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 95, 0

Conread position: 404-567
Cow position:
Alignm length: 164
Alignm identity: 124
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 140, 0

Conread position: 420-539
Cow position:
Alignm length: 120
Alignm identity: 99
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 429-557
Cow position:
Alignm length: 129
Alignm identity: 105
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 111, 0

Conread position: 440-557
Cow position:
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 100, 0

Show alignments to all cow chromosomes.