Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-233 |
| Cow position: | chr12:21197541-21197772 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-261 |
| Cow position: | chr12:48404758-48405017 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 190 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 77, 42 |
| Conread position: | 1-537 |
| Cow position: | chr12:8678410-8677864 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-567 |
| Cow position: | chr12:1402202-1402774 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 1-567 |
| Cow position: | chr12:11097950-11098526 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-570 |
| Cow position: | chr12:42860106-42859541 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 2-439 |
| Cow position: | chr12:347545-347987 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 296 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 5, 15 |
| Conread position: | 6-537 |
| Cow position: | chr12:6406933-6406394 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 39 |
| Conread position: | 6-567 |
| Cow position: | chr12:20998406-20997850 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 13-537 |
| Cow position: | chr12:252336-251801 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-538 |
| Cow position: | chr12:2282266-2282803 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 13-555 |
| Cow position: | chr12:22206024-22205474 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 13-555 |
| Cow position: | chr12:27933225-27932671 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-558 |
| Cow position: | chr12:21941500-21942045 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 13-588 |
| Cow position: | chr12:8310906-8311484 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 26 |
| Conread position: | 13-591 |
| Cow position: | chr12:15951535-15950954 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 14-450 |
| Cow position: | chr12:26141535-26141983 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 15-464 |
| Cow position: | chr12:21207420-21207876 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-538 |
| Cow position: | chr12:2521-3056 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 15-538 |
| Cow position: | chr12:21254933-21254399 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-538 |
| Cow position: | chr12:22332345-22332881 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-545 |
| Cow position: | chr12:3360636-3361168 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 32 |
| Conread position: | 15-545 |
| Cow position: | chr12:21426419-21426958 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 15-545 |
| Cow position: | chr12:32653270-32653808 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 32 |
| Conread position: | 15-545 |
| Cow position: | chr12:37558282-37558820 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr12:43031660-43031121 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-558 |
| Cow position: | chr12:25101336-25100787 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 15-588 |
| Cow position: | chr12:14662888-14662329 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 28 |
| Conread position: | 18-552 |
| Cow position: | chr12:21901672-21902210 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 18-555 |
| Cow position: | chr12:28766291-28765745 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 19-261 |
| Cow position: | chr12:1868196-1868433 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 19-565 |
| Cow position: | chr12:45261343-45261904 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 7 |
| Conread position: | 23-504 |
| Cow position: | chr12:14693384-14693846 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 316 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 5, 21 |
| Conread position: | 27-467 |
| Cow position: | chr12:17128577-17128135 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 289 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 51, 20 |
| Conread position: | 46-442 |
| Cow position: | chr12:8982660-8982263 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 204 |
| Conread position: | 46-487 |
| Cow position: | chr12:1137346-1137779 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 299 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 207, 66 |
| Conread position: | 46-610 |
| Cow position: | chr12:21499871-21500434 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 66 |
| Conread position: | 75-539 |
| Cow position: | chr12:21227662-21227192 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 17 |
| Conread position: | 76-234 |
| Cow position: | chr12:42420332-42420176 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 78-557 |
| Cow position: | chr12:26947190-26946717 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 184 |
| Conread position: | 79-495 |
| Cow position: | chr12:17975341-17975751 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 277 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 23, 173 |
| Conread position: | 115-604 |
| Cow position: | chr12:3632427-3631939 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 325 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 129, 121 |
| Conread position: | 178-596 |
| Cow position: | chr12:18500941-18501347 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 192-610 |
| Cow position: | chr12:34854886-34854472 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 273 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 88, 26 |
| Conread position: | 224-552 |
| Cow position: | chr12:4188905-4189250 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 113 |
| Conread position: | 239-570 |
| Cow position: | chr12:2838903-2838565 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 235 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 28, 219 |
| Conread position: | 249-604 |
| Cow position: | chr12:48405232-48405577 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 18, 213 |
| Conread position: | 276-545 |
| Cow position: | chr12:33986156-33986426 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 112, 0 |
| Conread position: | 278-588 |
| Cow position: | chr12:21197954-21198264 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 258 |
| Conread position: | 337-538 |
| Cow position: | chr12:5861209-5861410 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 48, 79 |
| Conread position: | 362-557 |
| Cow position: | chr12:23240084-23240275 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 28, 80 |
| Conread position: | 423-557 |
| Cow position: | chr12:31544920-31545051 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 117, 0 |
| Conread position: | 434-545 |
| Cow position: | chr12:4157530-4157641 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 91 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.