Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-382 |
| Cow position: | |
| Alignm length: | 392 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 1-521 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-537 |
| Cow position: | |
| Alignm length: | 550 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-566 |
| Cow position: | |
| Alignm length: | 579 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-567 |
| Cow position: | |
| Alignm length: | 581 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 1-567 |
| Cow position: | |
| Alignm length: | 580 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 45 |
| Conread position: | 6-450 |
| Cow position: | |
| Alignm length: | 452 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 40 |
| Conread position: | 6-567 |
| Cow position: | |
| Alignm length: | 576 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 39 |
| Conread position: | 6-584 |
| Cow position: | |
| Alignm length: | 593 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 39 |
| Conread position: | 13-244 |
| Cow position: | |
| Alignm length: | 234 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 13-280 |
| Cow position: | |
| Alignm length: | 279 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 13-317 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 30 |
| Conread position: | 13-336 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 13-538 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 30 |
| Conread position: | 13-538 |
| Cow position: | |
| Alignm length: | 540 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 13-539 |
| Cow position: | |
| Alignm length: | 542 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 31 |
| Conread position: | 13-555 |
| Cow position: | |
| Alignm length: | 555 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-566 |
| Cow position: | |
| Alignm length: | 565 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 33 |
| Conread position: | 13-567 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-567 |
| Cow position: | |
| Alignm length: | 570 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 13-567 |
| Cow position: | |
| Alignm length: | 568 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-609 |
| Cow position: | |
| Alignm length: | 609 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 5 |
| Conread position: | 14-220 |
| Cow position: | |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 83, 33 |
| Conread position: | 14-239 |
| Cow position: | |
| Alignm length: | 232 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 74, 29 |
| Conread position: | 14-538 |
| Cow position: | |
| Alignm length: | 535 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 15-184 |
| Cow position: | |
| Alignm length: | 173 |
| Alignm identity: | 128 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 54, 28 |
| Conread position: | 15-515 |
| Cow position: | |
| Alignm length: | 509 |
| Alignm identity: | 326 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 62, 24 |
| Conread position: | 15-523 |
| Cow position: | |
| Alignm length: | 519 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-537 |
| Cow position: | |
| Alignm length: | 534 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 537 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 530 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 536 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 9 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-553 |
| Cow position: | |
| Alignm length: | 542 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-557 |
| Cow position: | |
| Alignm length: | 558 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 15-567 |
| Cow position: | |
| Alignm length: | 570 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-567 |
| Cow position: | |
| Alignm length: | 566 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-572 |
| Cow position: | |
| Alignm length: | 563 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 30 |
| Conread position: | 15-588 |
| Cow position: | |
| Alignm length: | 584 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 16-464 |
| Cow position: | |
| Alignm length: | 462 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 33 |
| Conread position: | 16-545 |
| Cow position: | |
| Alignm length: | 538 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 29 |
| Conread position: | 17-545 |
| Cow position: | |
| Alignm length: | 537 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 18-254 |
| Cow position: | |
| Alignm length: | 240 |
| Alignm identity: | 159 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 60, 19 |
| Conread position: | 18-347 |
| Cow position: | |
| Alignm length: | 342 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 18-436 |
| Cow position: | |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 60, 153 |
| Conread position: | 18-539 |
| Cow position: | |
| Alignm length: | 535 |
| Alignm identity: | 347 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-598 |
| Cow position: | |
| Alignm length: | 610 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 18-609 |
| Cow position: | |
| Alignm length: | 594 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 408, 9 |
| Conread position: | 24-536 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 19 |
| Conread position: | 24-538 |
| Cow position: | |
| Alignm length: | 523 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 20 |
| Conread position: | 44-495 |
| Cow position: | |
| Alignm length: | 456 |
| Alignm identity: | 293 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 243, 17 |
| Conread position: | 55-409 |
| Cow position: | |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 33, 112 |
| Conread position: | 61-539 |
| Cow position: | |
| Alignm length: | 487 |
| Alignm identity: | 315 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 25, 134 |
| Conread position: | 71-458 |
| Cow position: | |
| Alignm length: | 398 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 85, 10 |
| Conread position: | 72-493 |
| Cow position: | |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 291 |
| Conread position: | 72-545 |
| Cow position: | |
| Alignm length: | 482 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 0 |
| Conread position: | 73-498 |
| Cow position: | |
| Alignm length: | 432 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 79 |
| Conread position: | 73-537 |
| Cow position: | |
| Alignm length: | 479 |
| Alignm identity: | 308 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 85, 129 |
| Conread position: | 104-538 |
| Cow position: | |
| Alignm length: | 436 |
| Alignm identity: | 136 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 281, 0 |
| Conread position: | 125-368 |
| Cow position: | |
| Alignm length: | 244 |
| Alignm identity: | 176 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 132, 0 |
| Conread position: | 139-552 |
| Cow position: | |
| Alignm length: | 430 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 283 |
| Conread position: | 140-469 |
| Cow position: | |
| Alignm length: | 341 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 130, 15 |
| Conread position: | 146-539 |
| Cow position: | |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 106, 59 |
| Conread position: | 149-534 |
| Cow position: | |
| Alignm length: | 404 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 118, 26 |
| Conread position: | 162-384 |
| Cow position: | |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 63, 13 |
| Conread position: | 182-539 |
| Cow position: | |
| Alignm length: | 362 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 179, 51 |
| Conread position: | 211-406 |
| Cow position: | |
| Alignm length: | 207 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 56, 156 |
| Conread position: | 211-557 |
| Cow position: | |
| Alignm length: | 356 |
| Alignm identity: | 222 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 108 |
| Conread position: | 214-528 |
| Cow position: | |
| Alignm length: | 322 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 81 |
| Conread position: | 216-515 |
| Cow position: | |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 17 |
| Conread position: | 230-567 |
| Cow position: | |
| Alignm length: | 339 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 18 |
| Conread position: | 233-529 |
| Cow position: | |
| Alignm length: | 305 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 34, 189 |
| Conread position: | 250-552 |
| Cow position: | |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 6, 77 |
| Conread position: | 281-588 |
| Cow position: | |
| Alignm length: | 310 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 255 |
| Conread position: | 299-519 |
| Cow position: | |
| Alignm length: | 228 |
| Alignm identity: | 162 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 89, 6 |
| Conread position: | 302-563 |
| Cow position: | |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 197, 95 |
| Conread position: | 326-460 |
| Cow position: | |
| Alignm length: | 136 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 331-545 |
| Cow position: | |
| Alignm length: | 216 |
| Alignm identity: | 174 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 333-545 |
| Cow position: | |
| Alignm length: | 215 |
| Alignm identity: | 175 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 362-555 |
| Cow position: | |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 380-587 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 411-609 |
| Cow position: | |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 133, 112 |
| Conread position: | 412-558 |
| Cow position: | |
| Alignm length: | 148 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 422-567 |
| Cow position: | |
| Alignm length: | 147 |
| Alignm identity: | 111 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 142, 118 |
Show alignments to all cow chromosomes.