Cow genome map
Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
Conread position: | 1-382 |
Cow position: | chr13:30302560-30302943 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 287 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 44 |
Conread position: | 1-521 |
Cow position: | chr13:34042877-34042349 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 404 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-537 |
Cow position: | chr13:1593667-1593119 (view UCSC Genome Browser custom track) |
Alignm length: | 550 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-566 |
Cow position: | chr13:15521026-15520451 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-567 |
Cow position: | chr13:4940574-4941151 (view UCSC Genome Browser custom track) |
Alignm length: | 581 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 43 |
Conread position: | 1-567 |
Cow position: | chr13:15924895-15924321 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 45 |
Conread position: | 6-450 |
Cow position: | chr13:33336830-33336394 (view UCSC Genome Browser custom track) |
Alignm length: | 452 |
Alignm identity: | 326 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 40 |
Conread position: | 6-567 |
Cow position: | chr13:34911873-34911317 (view UCSC Genome Browser custom track) |
Alignm length: | 576 |
Alignm identity: | 434 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 67, 39 |
Conread position: | 6-584 |
Cow position: | chr13:3654818-3654245 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 39 |
Conread position: | 13-244 |
Cow position: | chr13:47859953-47860183 (view UCSC Genome Browser custom track) |
Alignm length: | 234 |
Alignm identity: | 159 |
Alignm E-value: | 3e-26 |
Alignm gaps (pig, cow): | 67, 30 |
Conread position: | 13-280 |
Cow position: | chr13:30237670-30237940 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 200 |
Alignm E-value: | 2e-35 |
Alignm gaps (pig, cow): | 58, 30 |
Conread position: | 13-317 |
Cow position: | chr13:32544447-32544754 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 230 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 102, 30 |
Conread position: | 13-336 |
Cow position: | chr13:34868269-34868606 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 249 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 33 |
Conread position: | 13-538 |
Cow position: | chr13:31832108-31832633 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 254, 30 |
Conread position: | 13-538 |
Cow position: | chr13:34326176-34325639 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 32 |
Conread position: | 13-539 |
Cow position: | chr13:31560693-31561224 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 364 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 88, 31 |
Conread position: | 13-555 |
Cow position: | chr13:9044010-9044553 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 419 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 30 |
Conread position: | 13-566 |
Cow position: | chr13:32738319-32737760 (view UCSC Genome Browser custom track) |
Alignm length: | 565 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 33 |
Conread position: | 13-567 |
Cow position: | chr13:31612836-31612273 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 30 |
Conread position: | 13-567 |
Cow position: | chr13:34187188-34186625 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 32 |
Conread position: | 13-567 |
Cow position: | chr13:35756740-35757305 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 32 |
Conread position: | 13-609 |
Cow position: | chr13:20542861-20542263 (view UCSC Genome Browser custom track) |
Alignm length: | 609 |
Alignm identity: | 456 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 5 |
Conread position: | 14-220 |
Cow position: | chr13:3058492-3058281 (view UCSC Genome Browser custom track) |
Alignm length: | 213 |
Alignm identity: | 160 |
Alignm E-value: | 8e-37 |
Alignm gaps (pig, cow): | 83, 33 |
Conread position: | 14-239 |
Cow position: | chr13:4481977-4482201 (view UCSC Genome Browser custom track) |
Alignm length: | 232 |
Alignm identity: | 169 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 74, 29 |
Conread position: | 14-538 |
Cow position: | chr13:4872580-4873112 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 35 |
Conread position: | 15-184 |
Cow position: | chr13:13046318-13046149 (view UCSC Genome Browser custom track) |
Alignm length: | 173 |
Alignm identity: | 128 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 54, 28 |
Conread position: | 15-515 |
Cow position: | chr13:14392164-14392644 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 326 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 62, 24 |
Conread position: | 15-523 |
Cow position: | chr13:2908942-2908428 (view UCSC Genome Browser custom track) |
Alignm length: | 519 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 28 |
Conread position: | 15-537 |
Cow position: | chr13:50108968-50109498 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-538 |
Cow position: | chr13:31734579-31734049 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 388 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-538 |
Cow position: | chr13:32986545-32986021 (view UCSC Genome Browser custom track) |
Alignm length: | 530 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 32 |
Conread position: | 15-538 |
Cow position: | chr13:33825226-33824699 (view UCSC Genome Browser custom track) |
Alignm length: | 533 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 30 |
Conread position: | 15-538 |
Cow position: | chr13:34143155-34142622 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 30 |
Conread position: | 15-545 |
Cow position: | chr13:2297294-2296768 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 385 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 9 |
Conread position: | 15-545 |
Cow position: | chr13:2389292-2388775 (view UCSC Genome Browser custom track) |
Alignm length: | 543 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 18, 29 |
Conread position: | 15-545 |
Cow position: | chr13:21840693-21840151 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 32 |
Conread position: | 15-553 |
Cow position: | chr13:30657459-30656926 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 403 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 28 |
Conread position: | 15-557 |
Cow position: | chr13:34692665-34693217 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 17 |
Conread position: | 15-567 |
Cow position: | chr13:6668622-6668058 (view UCSC Genome Browser custom track) |
Alignm length: | 570 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-567 |
Cow position: | chr13:62328080-62327520 (view UCSC Genome Browser custom track) |
Alignm length: | 566 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 30 |
Conread position: | 15-572 |
Cow position: | chr13:33928057-33927520 (view UCSC Genome Browser custom track) |
Alignm length: | 563 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 30 |
Conread position: | 15-588 |
Cow position: | chr13:3276659-3277239 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 30 |
Conread position: | 16-464 |
Cow position: | chr13:30245231-30244772 (view UCSC Genome Browser custom track) |
Alignm length: | 462 |
Alignm identity: | 342 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 33 |
Conread position: | 16-545 |
Cow position: | chr13:17307983-17308518 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 29 |
Conread position: | 17-545 |
Cow position: | chr13:13324261-13324792 (view UCSC Genome Browser custom track) |
Alignm length: | 537 |
Alignm identity: | 402 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 30 |
Conread position: | 18-254 |
Cow position: | chr13:46732846-46732609 (view UCSC Genome Browser custom track) |
Alignm length: | 240 |
Alignm identity: | 159 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 60, 19 |
Conread position: | 18-347 |
Cow position: | chr13:2232164-2232504 (view UCSC Genome Browser custom track) |
Alignm length: | 342 |
Alignm identity: | 257 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 27 |
Conread position: | 18-436 |
Cow position: | chr13:5718493-5718902 (view UCSC Genome Browser custom track) |
Alignm length: | 427 |
Alignm identity: | 282 |
Alignm E-value: | 3e-37 |
Alignm gaps (pig, cow): | 60, 153 |
Conread position: | 18-539 |
Cow position: | chr13:2306008-2306527 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 347 |
Alignm E-value: | 6.02558e-44 |
Alignm gaps (pig, cow): | 60, 25 |
Conread position: | 18-598 |
Cow position: | chr13:34936643-34937249 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 452 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 28 |
Conread position: | 18-609 |
Cow position: | chr13:54284097-54284678 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 459 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 408, 9 |
Conread position: | 24-536 |
Cow position: | chr13:30140504-30141040 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 367 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 19 |
Conread position: | 24-538 |
Cow position: | chr13:56730762-56730251 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 53, 20 |
Conread position: | 44-495 |
Cow position: | chr13:19438482-19438926 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 293 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 243, 17 |
Conread position: | 55-409 |
Cow position: | chr13:2583755-2583399 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 239 |
Alignm E-value: | 8e-36 |
Alignm gaps (pig, cow): | 33, 112 |
Conread position: | 61-539 |
Cow position: | chr13:22186172-22185702 (view UCSC Genome Browser custom track) |
Alignm length: | 487 |
Alignm identity: | 315 |
Alignm E-value: | 4.99983e-42 |
Alignm gaps (pig, cow): | 25, 134 |
Conread position: | 71-458 |
Cow position: | chr13:34387865-34387476 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 257 |
Alignm E-value: | 2e-32 |
Alignm gaps (pig, cow): | 85, 10 |
Conread position: | 72-493 |
Cow position: | chr13:23003952-23003527 (view UCSC Genome Browser custom track) |
Alignm length: | 429 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 193, 291 |
Conread position: | 72-545 |
Cow position: | chr13:49973246-49973727 (view UCSC Genome Browser custom track) |
Alignm length: | 482 |
Alignm identity: | 375 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 0 |
Conread position: | 73-498 |
Cow position: | chr13:21130893-21131317 (view UCSC Genome Browser custom track) |
Alignm length: | 432 |
Alignm identity: | 292 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 111, 79 |
Conread position: | 73-537 |
Cow position: | chr13:58261678-58262142 (view UCSC Genome Browser custom track) |
Alignm length: | 479 |
Alignm identity: | 308 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 85, 129 |
Conread position: | 104-538 |
Cow position: | chr13:676477-676912 (view UCSC Genome Browser custom track) |
Alignm length: | 436 |
Alignm identity: | 136 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 281, 0 |
Conread position: | 125-368 |
Cow position: | chr13:15451868-15451635 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 176 |
Alignm E-value: | 6e-34 |
Alignm gaps (pig, cow): | 132, 0 |
Conread position: | 139-552 |
Cow position: | chr13:35030178-35030599 (view UCSC Genome Browser custom track) |
Alignm length: | 430 |
Alignm identity: | 303 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 283 |
Conread position: | 140-469 |
Cow position: | chr13:41312132-41311794 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 214 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 130, 15 |
Conread position: | 146-539 |
Cow position: | chr13:34767638-34767258 (view UCSC Genome Browser custom track) |
Alignm length: | 396 |
Alignm identity: | 277 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 106, 59 |
Conread position: | 149-534 |
Cow position: | chr13:3567425-3567826 (view UCSC Genome Browser custom track) |
Alignm length: | 404 |
Alignm identity: | 304 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 118, 26 |
Conread position: | 162-384 |
Cow position: | chr13:48356958-48357186 (view UCSC Genome Browser custom track) |
Alignm length: | 235 |
Alignm identity: | 169 |
Alignm E-value: | 3e-27 |
Alignm gaps (pig, cow): | 63, 13 |
Conread position: | 182-539 |
Cow position: | chr13:11764560-11764222 (view UCSC Genome Browser custom track) |
Alignm length: | 362 |
Alignm identity: | 242 |
Alignm E-value: | 1e-29 |
Alignm gaps (pig, cow): | 179, 51 |
Conread position: | 211-406 |
Cow position: | chr13:10114949-10114749 (view UCSC Genome Browser custom track) |
Alignm length: | 207 |
Alignm identity: | 155 |
Alignm E-value: | 4e-29 |
Alignm gaps (pig, cow): | 56, 156 |
Conread position: | 211-557 |
Cow position: | chr13:3788520-3788170 (view UCSC Genome Browser custom track) |
Alignm length: | 356 |
Alignm identity: | 222 |
Alignm E-value: | 5e-21 |
Alignm gaps (pig, cow): | 42, 108 |
Conread position: | 214-528 |
Cow position: | chr13:19220115-19219798 (view UCSC Genome Browser custom track) |
Alignm length: | 322 |
Alignm identity: | 207 |
Alignm E-value: | 7e-25 |
Alignm gaps (pig, cow): | 41, 81 |
Conread position: | 216-515 |
Cow position: | chr13:47230279-47229974 (view UCSC Genome Browser custom track) |
Alignm length: | 307 |
Alignm identity: | 241 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 17 |
Conread position: | 230-567 |
Cow position: | chr13:4483529-4483857 (view UCSC Genome Browser custom track) |
Alignm length: | 339 |
Alignm identity: | 254 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 158, 18 |
Conread position: | 233-529 |
Cow position: | chr13:28672910-28672608 (view UCSC Genome Browser custom track) |
Alignm length: | 305 |
Alignm identity: | 204 |
Alignm E-value: | 1e-30 |
Alignm gaps (pig, cow): | 34, 189 |
Conread position: | 250-552 |
Cow position: | chr13:46732479-46732174 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 223 |
Alignm E-value: | 3e-39 |
Alignm gaps (pig, cow): | 6, 77 |
Conread position: | 281-588 |
Cow position: | chr13:4178873-4178567 (view UCSC Genome Browser custom track) |
Alignm length: | 310 |
Alignm identity: | 226 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 107, 255 |
Conread position: | 299-519 |
Cow position: | chr13:3338584-3338806 (view UCSC Genome Browser custom track) |
Alignm length: | 228 |
Alignm identity: | 162 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 89, 6 |
Conread position: | 302-563 |
Cow position: | chr13:16343412-16343156 (view UCSC Genome Browser custom track) |
Alignm length: | 264 |
Alignm identity: | 192 |
Alignm E-value: | 4.00001e-41 |
Alignm gaps (pig, cow): | 197, 95 |
Conread position: | 326-460 |
Cow position: | chr13:30237941-30238076 (view UCSC Genome Browser custom track) |
Alignm length: | 136 |
Alignm identity: | 107 |
Alignm E-value: | 9e-27 |
Alignm gaps (pig, cow): | 60, 0 |
Conread position: | 331-545 |
Cow position: | chr13:60466165-60466380 (view UCSC Genome Browser custom track) |
Alignm length: | 216 |
Alignm identity: | 174 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 0 |
Conread position: | 333-545 |
Cow position: | chr13:3058281-3058067 (view UCSC Genome Browser custom track) |
Alignm length: | 215 |
Alignm identity: | 175 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 362-555 |
Cow position: | chr13:32544918-32545112 (view UCSC Genome Browser custom track) |
Alignm length: | 195 |
Alignm identity: | 145 |
Alignm E-value: | 7e-35 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 380-587 |
Cow position: | chr13:34868621-34868824 (view UCSC Genome Browser custom track) |
Alignm length: | 208 |
Alignm identity: | 164 |
Alignm E-value: | 1.96182e-44 |
Alignm gaps (pig, cow): | 77, 0 |
Conread position: | 411-609 |
Cow position: | chr13:15451647-15451450 (view UCSC Genome Browser custom track) |
Alignm length: | 202 |
Alignm identity: | 146 |
Alignm E-value: | 1e-28 |
Alignm gaps (pig, cow): | 133, 112 |
Conread position: | 412-558 |
Cow position: | chr13:11799852-11799708 (view UCSC Genome Browser custom track) |
Alignm length: | 148 |
Alignm identity: | 110 |
Alignm E-value: | 2e-21 |
Alignm gaps (pig, cow): | 55, 129 |
Conread position: | 422-567 |
Cow position: | chr13:22765943-22766086 (view UCSC Genome Browser custom track) |
Alignm length: | 147 |
Alignm identity: | 111 |
Alignm E-value: | 6e-23 |
Alignm gaps (pig, cow): | 142, 118 |
Show alignments to all cow chromosomes.