Cow genome map

Conread name: Ss1.1-Utr1-UTR01A020092.5

Conread position: 1-382
Cow position: chr13:30302560-30302943 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 44

Conread position: 1-521
Cow position: chr13:34042877-34042349 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-537
Cow position: chr13:1593667-1593119 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-566
Cow position: chr13:15521026-15520451 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position: chr13:4940574-4941151 (view UCSC Genome Browser custom track)
Alignm length: 581
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 43

Conread position: 1-567
Cow position: chr13:15924895-15924321 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 45

Conread position: 6-450
Cow position: chr13:33336830-33336394 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 40

Conread position: 6-567
Cow position: chr13:34911873-34911317 (view UCSC Genome Browser custom track)
Alignm length: 576
Alignm identity: 434
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 39

Conread position: 6-584
Cow position: chr13:3654818-3654245 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 39

Conread position: 13-244
Cow position: chr13:47859953-47860183 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 159
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 67, 30

Conread position: 13-280
Cow position: chr13:30237670-30237940 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 200
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 58, 30

Conread position: 13-317
Cow position: chr13:32544447-32544754 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 30

Conread position: 13-336
Cow position: chr13:34868269-34868606 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 13-538
Cow position: chr13:31832108-31832633 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 30

Conread position: 13-538
Cow position: chr13:34326176-34325639 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 32

Conread position: 13-539
Cow position: chr13:31560693-31561224 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 31

Conread position: 13-555
Cow position: chr13:9044010-9044553 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 419
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-566
Cow position: chr13:32738319-32737760 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 33

Conread position: 13-567
Cow position: chr13:31612836-31612273 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-567
Cow position: chr13:34187188-34186625 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 32

Conread position: 13-567
Cow position: chr13:35756740-35757305 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-609
Cow position: chr13:20542861-20542263 (view UCSC Genome Browser custom track)
Alignm length: 609
Alignm identity: 456
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 5

Conread position: 14-220
Cow position: chr13:3058492-3058281 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 160
Alignm E-value: 8e-37
Alignm gaps (pig, cow): 83, 33

Conread position: 14-239
Cow position: chr13:4481977-4482201 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 169
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 74, 29

Conread position: 14-538
Cow position: chr13:4872580-4873112 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 35

Conread position: 15-184
Cow position: chr13:13046318-13046149 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 128
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 54, 28

Conread position: 15-515
Cow position: chr13:14392164-14392644 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 326
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 62, 24

Conread position: 15-523
Cow position: chr13:2908942-2908428 (view UCSC Genome Browser custom track)
Alignm length: 519
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-537
Cow position: chr13:50108968-50109498 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-538
Cow position: chr13:31734579-31734049 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 388
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-538
Cow position: chr13:32986545-32986021 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-538
Cow position: chr13:33825226-33824699 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 15-538
Cow position: chr13:34143155-34142622 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 15-545
Cow position: chr13:2297294-2296768 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 385
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 9

Conread position: 15-545
Cow position: chr13:2389292-2388775 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 29

Conread position: 15-545
Cow position: chr13:21840693-21840151 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-553
Cow position: chr13:30657459-30656926 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-557
Cow position: chr13:34692665-34693217 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 17

Conread position: 15-567
Cow position: chr13:6668622-6668058 (view UCSC Genome Browser custom track)
Alignm length: 570
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-567
Cow position: chr13:62328080-62327520 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 15-572
Cow position: chr13:33928057-33927520 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 30

Conread position: 15-588
Cow position: chr13:3276659-3277239 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 30

Conread position: 16-464
Cow position: chr13:30245231-30244772 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 33

Conread position: 16-545
Cow position: chr13:17307983-17308518 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 29

Conread position: 17-545
Cow position: chr13:13324261-13324792 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 402
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 30

Conread position: 18-254
Cow position: chr13:46732846-46732609 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 159
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 60, 19

Conread position: 18-347
Cow position: chr13:2232164-2232504 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 18-436
Cow position: chr13:5718493-5718902 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 282
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 60, 153

Conread position: 18-539
Cow position: chr13:2306008-2306527 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 347
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 60, 25

Conread position: 18-598
Cow position: chr13:34936643-34937249 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 452
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 28

Conread position: 18-609
Cow position: chr13:54284097-54284678 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 459
Alignm E-value: 0
Alignm gaps (pig, cow): 408, 9

Conread position: 24-536
Cow position: chr13:30140504-30141040 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 19

Conread position: 24-538
Cow position: chr13:56730762-56730251 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 20

Conread position: 44-495
Cow position: chr13:19438482-19438926 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 293
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 243, 17

Conread position: 55-409
Cow position: chr13:2583755-2583399 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 239
Alignm E-value: 8e-36
Alignm gaps (pig, cow): 33, 112

Conread position: 61-539
Cow position: chr13:22186172-22185702 (view UCSC Genome Browser custom track)
Alignm length: 487
Alignm identity: 315
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 25, 134

Conread position: 71-458
Cow position: chr13:34387865-34387476 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 257
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 85, 10

Conread position: 72-493
Cow position: chr13:23003952-23003527 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 291

Conread position: 72-545
Cow position: chr13:49973246-49973727 (view UCSC Genome Browser custom track)
Alignm length: 482
Alignm identity: 375
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 73-498
Cow position: chr13:21130893-21131317 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 79

Conread position: 73-537
Cow position: chr13:58261678-58262142 (view UCSC Genome Browser custom track)
Alignm length: 479
Alignm identity: 308
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 85, 129

Conread position: 104-538
Cow position: chr13:676477-676912 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 136
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 281, 0

Conread position: 125-368
Cow position: chr13:15451868-15451635 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 176
Alignm E-value: 6e-34
Alignm gaps (pig, cow): 132, 0

Conread position: 139-552
Cow position: chr13:35030178-35030599 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 283

Conread position: 140-469
Cow position: chr13:41312132-41311794 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 214
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 130, 15

Conread position: 146-539
Cow position: chr13:34767638-34767258 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 106, 59

Conread position: 149-534
Cow position: chr13:3567425-3567826 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 26

Conread position: 162-384
Cow position: chr13:48356958-48357186 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 63, 13

Conread position: 182-539
Cow position: chr13:11764560-11764222 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 242
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 179, 51

Conread position: 211-406
Cow position: chr13:10114949-10114749 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 155
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 56, 156

Conread position: 211-557
Cow position: chr13:3788520-3788170 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 222
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 108

Conread position: 214-528
Cow position: chr13:19220115-19219798 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 207
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 41, 81

Conread position: 216-515
Cow position: chr13:47230279-47229974 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 17

Conread position: 230-567
Cow position: chr13:4483529-4483857 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 18

Conread position: 233-529
Cow position: chr13:28672910-28672608 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 189

Conread position: 250-552
Cow position: chr13:46732479-46732174 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 6, 77

Conread position: 281-588
Cow position: chr13:4178873-4178567 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 255

Conread position: 299-519
Cow position: chr13:3338584-3338806 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 89, 6

Conread position: 302-563
Cow position: chr13:16343412-16343156 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 192
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 197, 95

Conread position: 326-460
Cow position: chr13:30237941-30238076 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 60, 0

Conread position: 331-545
Cow position: chr13:60466165-60466380 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 174
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 0

Conread position: 333-545
Cow position: chr13:3058281-3058067 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 175
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 362-555
Cow position: chr13:32544918-32545112 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 145
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 23, 0

Conread position: 380-587
Cow position: chr13:34868621-34868824 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 164
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 77, 0

Conread position: 411-609
Cow position: chr13:15451647-15451450 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 146
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 133, 112

Conread position: 412-558
Cow position: chr13:11799852-11799708 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 55, 129

Conread position: 422-567
Cow position: chr13:22765943-22766086 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 142, 118

Show alignments to all cow chromosomes.