Cow genome map

Conread name: Ss1.1-Utr1-UTR01A020092.5

Conread position: 1-376
Cow position: chr17:15322426-15322790 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 42

Conread position: 1-511
Cow position: chr17:16859961-16859451 (view UCSC Genome Browser custom track)
Alignm length: 524
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 48

Conread position: 1-545
Cow position: chr17:15435388-15435942 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 13

Conread position: 1-551
Cow position: chr17:3643241-3642679 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-552
Cow position: chr17:13857178-13856613 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-555
Cow position: chr17:25737259-25737824 (view UCSC Genome Browser custom track)
Alignm length: 567
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 42

Conread position: 1-557
Cow position: chr17:22429886-22429328 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 12

Conread position: 1-568
Cow position: chr17:19269769-19269194 (view UCSC Genome Browser custom track)
Alignm length: 579
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 43

Conread position: 1-575
Cow position: chr17:13929263-13929849 (view UCSC Genome Browser custom track)
Alignm length: 588
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-588
Cow position: chr17:18104085-18103495 (view UCSC Genome Browser custom track)
Alignm length: 601
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-612
Cow position: chr17:42264122-42264723 (view UCSC Genome Browser custom track)
Alignm length: 625
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 273, 42

Conread position: 13-239
Cow position: chr17:2737985-2738216 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 175
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 66, 32

Conread position: 13-276
Cow position: chr17:40804006-40804270 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 198
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 66, 32

Conread position: 13-286
Cow position: chr17:2579168-2579444 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 32

Conread position: 13-286
Cow position: chr17:28109694-28109971 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 32

Conread position: 13-552
Cow position: chr17:2173484-2174037 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-588
Cow position: chr17:11088114-11087534 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-588
Cow position: chr17:14893770-14894344 (view UCSC Genome Browser custom track)
Alignm length: 589
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 18

Conread position: 13-609
Cow position: chr17:4081260-4081857 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 36

Conread position: 13-609
Cow position: chr17:4294985-4295563 (view UCSC Genome Browser custom track)
Alignm length: 604
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 370, 30

Conread position: 13-609
Cow position: chr17:14325886-14325292 (view UCSC Genome Browser custom track)
Alignm length: 613
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 32

Conread position: 14-419
Cow position: chr17:22160524-22160941 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 14-527
Cow position: chr17:9653841-9653323 (view UCSC Genome Browser custom track)
Alignm length: 521
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 253, 29

Conread position: 14-545
Cow position: chr17:6089553-6089010 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 14-545
Cow position: chr17:24633565-24634105 (view UCSC Genome Browser custom track)
Alignm length: 542
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 29

Conread position: 14-567
Cow position: chr17:4059716-4060269 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 35

Conread position: 15-252
Cow position: chr17:11782980-11783222 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 142
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 64, 32

Conread position: 15-336
Cow position: chr17:1284148-1283847 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 234
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 63, 28

Conread position: 15-464
Cow position: chr17:24780657-24781117 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-523
Cow position: chr17:14217415-14216894 (view UCSC Genome Browser custom track)
Alignm length: 523
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-537
Cow position: chr17:27345417-27345942 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 20

Conread position: 15-538
Cow position: chr17:15157350-15156820 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 32

Conread position: 15-538
Cow position: chr17:35591824-35592358 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 30

Conread position: 15-539
Cow position: chr17:6002401-6001873 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-545
Cow position: chr17:1879701-1880245 (view UCSC Genome Browser custom track)
Alignm length: 547
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 34

Conread position: 15-545
Cow position: chr17:2261719-2262253 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-545
Cow position: chr17:8208719-8209257 (view UCSC Genome Browser custom track)
Alignm length: 540
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position: chr17:20666117-20665575 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 29

Conread position: 15-545
Cow position: chr17:23324832-23324303 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position: chr17:43988147-43988684 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 28

Conread position: 15-560
Cow position: chr17:2248972-2248417 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-567
Cow position: chr17:15850008-15850568 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 7

Conread position: 15-570
Cow position: chr17:23857423-23856861 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 439
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-592
Cow position: chr17:228692-228108 (view UCSC Genome Browser custom track)
Alignm length: 593
Alignm identity: 436
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-597
Cow position: chr17:44853319-44852733 (view UCSC Genome Browser custom track)
Alignm length: 594
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 16-545
Cow position: chr17:1383201-1382663 (view UCSC Genome Browser custom track)
Alignm length: 541
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 27

Conread position: 17-477
Cow position: chr17:39933297-39933738 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 27

Conread position: 18-538
Cow position: chr17:1946588-1947113 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 391
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 25

Conread position: 18-554
Cow position: chr17:152852-152310 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 47, 16

Conread position: 18-558
Cow position: chr17:2146822-2147336 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 322, 25

Conread position: 18-567
Cow position: chr17:20183613-20183064 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 25

Conread position: 18-588
Cow position: chr17:18185912-18185343 (view UCSC Genome Browser custom track)
Alignm length: 586
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 27

Conread position: 18-605
Cow position: chr17:20401294-20401877 (view UCSC Genome Browser custom track)
Alignm length: 607
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 25

Conread position: 18-610
Cow position: chr17:1658945-1658342 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 249, 26

Conread position: 19-557
Cow position: chr17:16889738-16890283 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 20-609
Cow position: chr17:15370692-15371269 (view UCSC Genome Browser custom track)
Alignm length: 605
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 28

Conread position: 40-503
Cow position: chr17:4286729-4287187 (view UCSC Genome Browser custom track)
Alignm length: 475
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 43

Conread position: 40-538
Cow position: chr17:15143730-15143223 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 382
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 51

Conread position: 58-556
Cow position: chr17:2587987-2588466 (view UCSC Genome Browser custom track)
Alignm length: 506
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 58

Conread position: 72-447
Cow position: chr17:4671865-4672236 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 250
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 8, 67

Conread position: 72-537
Cow position: chr17:16418167-16417695 (view UCSC Genome Browser custom track)
Alignm length: 480
Alignm identity: 309
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 117, 74

Conread position: 72-567
Cow position: chr17:6259516-6260014 (view UCSC Genome Browser custom track)
Alignm length: 503
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 392

Conread position: 74-461
Cow position: chr17:14308629-14308245 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 130

Conread position: 74-567
Cow position: chr17:22131907-22132398 (view UCSC Genome Browser custom track)
Alignm length: 502
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 98

Conread position: 75-567
Cow position: chr17:20088056-20087574 (view UCSC Genome Browser custom track)
Alignm length: 499
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 190, 118

Conread position: 79-538
Cow position: chr17:2287067-2287530 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 112

Conread position: 131-538
Cow position: chr17:18027027-18026613 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 136, 0

Conread position: 139-514
Cow position: chr17:2555861-2556242 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 128, 268

Conread position: 176-425
Cow position: chr17:12670672-12670423 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 170
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 206, 85

Conread position: 190-448
Cow position: chr17:18849487-18849754 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 175
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 192-598
Cow position: chr17:40834546-40834945 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 269
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 76, 62

Conread position: 226-567
Cow position: chr17:2579457-2579786 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 46

Conread position: 252-539
Cow position: chr17:31199792-31199519 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 15, 107

Conread position: 254-588
Cow position: chr17:40804676-40805008 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 18

Conread position: 257-575
Cow position: chr17:18325135-18324819 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 215
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 14, 84

Conread position: 293-502
Cow position: chr17:249834-250047 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 91, 45

Conread position: 293-545
Cow position: chr17:181261-181514 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 296-567
Cow position: chr17:602523-602268 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 205
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 0

Conread position: 314-492
Cow position: chr17:26205888-26205708 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 147
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 74, 0

Conread position: 329-479
Cow position: chr17:6068568-6068714 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 56, 32

Conread position: 337-572
Cow position: chr17:1283763-1283530 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 181
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 204

Conread position: 365-545
Cow position: chr17:31768069-31767888 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 148
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 23, 0

Conread position: 365-545
Cow position: chr17:43952592-43952412 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 145
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 365-567
Cow position: chr17:15323216-15323416 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 18, 87

Conread position: 372-588
Cow position: chr17:22557599-22557817 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 159
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 13, 69

Conread position: 376-545
Cow position: chr17:34156109-34156279 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 140
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 13, 0

Conread position: 385-508
Cow position: chr17:36987680-36987557 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 403-587
Cow position: chr17:14041036-14040853 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 38, 33

Conread position: 405-514
Cow position: chr17:602694-602803 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 89
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.