Cow genome map
Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
Conread position: | 1-376 |
Cow position: | chr17:15322426-15322790 (view UCSC Genome Browser custom track) |
Alignm length: | 380 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 281, 42 |
Conread position: | 1-511 |
Cow position: | chr17:16859961-16859451 (view UCSC Genome Browser custom track) |
Alignm length: | 524 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 48 |
Conread position: | 1-545 |
Cow position: | chr17:15435388-15435942 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 13 |
Conread position: | 1-551 |
Cow position: | chr17:3643241-3642679 (view UCSC Genome Browser custom track) |
Alignm length: | 564 |
Alignm identity: | 418 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 42 |
Conread position: | 1-552 |
Cow position: | chr17:13857178-13856613 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-555 |
Cow position: | chr17:25737259-25737824 (view UCSC Genome Browser custom track) |
Alignm length: | 567 |
Alignm identity: | 420 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 42 |
Conread position: | 1-557 |
Cow position: | chr17:22429886-22429328 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 12 |
Conread position: | 1-568 |
Cow position: | chr17:19269769-19269194 (view UCSC Genome Browser custom track) |
Alignm length: | 579 |
Alignm identity: | 432 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 43 |
Conread position: | 1-575 |
Cow position: | chr17:13929263-13929849 (view UCSC Genome Browser custom track) |
Alignm length: | 588 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-588 |
Cow position: | chr17:18104085-18103495 (view UCSC Genome Browser custom track) |
Alignm length: | 601 |
Alignm identity: | 442 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 42 |
Conread position: | 1-612 |
Cow position: | chr17:42264122-42264723 (view UCSC Genome Browser custom track) |
Alignm length: | 625 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 273, 42 |
Conread position: | 13-239 |
Cow position: | chr17:2737985-2738216 (view UCSC Genome Browser custom track) |
Alignm length: | 233 |
Alignm identity: | 175 |
Alignm E-value: | 3.00004e-41 |
Alignm gaps (pig, cow): | 66, 32 |
Conread position: | 13-276 |
Cow position: | chr17:40804006-40804270 (view UCSC Genome Browser custom track) |
Alignm length: | 271 |
Alignm identity: | 198 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 66, 32 |
Conread position: | 13-286 |
Cow position: | chr17:2579168-2579444 (view UCSC Genome Browser custom track) |
Alignm length: | 279 |
Alignm identity: | 208 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 57, 32 |
Conread position: | 13-286 |
Cow position: | chr17:28109694-28109971 (view UCSC Genome Browser custom track) |
Alignm length: | 282 |
Alignm identity: | 214 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 32 |
Conread position: | 13-552 |
Cow position: | chr17:2173484-2174037 (view UCSC Genome Browser custom track) |
Alignm length: | 556 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 32 |
Conread position: | 13-588 |
Cow position: | chr17:11088114-11087534 (view UCSC Genome Browser custom track) |
Alignm length: | 586 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 32 |
Conread position: | 13-588 |
Cow position: | chr17:14893770-14894344 (view UCSC Genome Browser custom track) |
Alignm length: | 589 |
Alignm identity: | 428 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 18 |
Conread position: | 13-609 |
Cow position: | chr17:4081260-4081857 (view UCSC Genome Browser custom track) |
Alignm length: | 618 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 36 |
Conread position: | 13-609 |
Cow position: | chr17:4294985-4295563 (view UCSC Genome Browser custom track) |
Alignm length: | 604 |
Alignm identity: | 421 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 370, 30 |
Conread position: | 13-609 |
Cow position: | chr17:14325886-14325292 (view UCSC Genome Browser custom track) |
Alignm length: | 613 |
Alignm identity: | 451 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 32 |
Conread position: | 14-419 |
Cow position: | chr17:22160524-22160941 (view UCSC Genome Browser custom track) |
Alignm length: | 420 |
Alignm identity: | 318 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 33 |
Conread position: | 14-527 |
Cow position: | chr17:9653841-9653323 (view UCSC Genome Browser custom track) |
Alignm length: | 521 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 253, 29 |
Conread position: | 14-545 |
Cow position: | chr17:6089553-6089010 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 416 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 29 |
Conread position: | 14-545 |
Cow position: | chr17:24633565-24634105 (view UCSC Genome Browser custom track) |
Alignm length: | 542 |
Alignm identity: | 408 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 86, 29 |
Conread position: | 14-567 |
Cow position: | chr17:4059716-4060269 (view UCSC Genome Browser custom track) |
Alignm length: | 566 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 74, 35 |
Conread position: | 15-252 |
Cow position: | chr17:11782980-11783222 (view UCSC Genome Browser custom track) |
Alignm length: | 244 |
Alignm identity: | 142 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 64, 32 |
Conread position: | 15-336 |
Cow position: | chr17:1284148-1283847 (view UCSC Genome Browser custom track) |
Alignm length: | 327 |
Alignm identity: | 234 |
Alignm E-value: | 7e-38 |
Alignm gaps (pig, cow): | 63, 28 |
Conread position: | 15-464 |
Cow position: | chr17:24780657-24781117 (view UCSC Genome Browser custom track) |
Alignm length: | 463 |
Alignm identity: | 352 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-523 |
Cow position: | chr17:14217415-14216894 (view UCSC Genome Browser custom track) |
Alignm length: | 523 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-537 |
Cow position: | chr17:27345417-27345942 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 20 |
Conread position: | 15-538 |
Cow position: | chr17:15157350-15156820 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 32 |
Conread position: | 15-538 |
Cow position: | chr17:35591824-35592358 (view UCSC Genome Browser custom track) |
Alignm length: | 538 |
Alignm identity: | 409 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 30 |
Conread position: | 15-539 |
Cow position: | chr17:6002401-6001873 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 373 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 28 |
Conread position: | 15-545 |
Cow position: | chr17:1879701-1880245 (view UCSC Genome Browser custom track) |
Alignm length: | 547 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 34 |
Conread position: | 15-545 |
Cow position: | chr17:2261719-2262253 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 32 |
Conread position: | 15-545 |
Cow position: | chr17:8208719-8209257 (view UCSC Genome Browser custom track) |
Alignm length: | 540 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-545 |
Cow position: | chr17:20666117-20665575 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 29 |
Conread position: | 15-545 |
Cow position: | chr17:23324832-23324303 (view UCSC Genome Browser custom track) |
Alignm length: | 545 |
Alignm identity: | 399 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-545 |
Cow position: | chr17:43988147-43988684 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 410 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 68, 28 |
Conread position: | 15-560 |
Cow position: | chr17:2248972-2248417 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 414 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 32 |
Conread position: | 15-567 |
Cow position: | chr17:15850008-15850568 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 7 |
Conread position: | 15-570 |
Cow position: | chr17:23857423-23856861 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 439 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 28 |
Conread position: | 15-592 |
Cow position: | chr17:228692-228108 (view UCSC Genome Browser custom track) |
Alignm length: | 593 |
Alignm identity: | 436 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-597 |
Cow position: | chr17:44853319-44852733 (view UCSC Genome Browser custom track) |
Alignm length: | 594 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 69, 28 |
Conread position: | 16-545 |
Cow position: | chr17:1383201-1382663 (view UCSC Genome Browser custom track) |
Alignm length: | 541 |
Alignm identity: | 417 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 75, 27 |
Conread position: | 17-477 |
Cow position: | chr17:39933297-39933738 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 323 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 61, 27 |
Conread position: | 18-538 |
Cow position: | chr17:1946588-1947113 (view UCSC Genome Browser custom track) |
Alignm length: | 534 |
Alignm identity: | 391 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 25 |
Conread position: | 18-554 |
Cow position: | chr17:152852-152310 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 47, 16 |
Conread position: | 18-558 |
Cow position: | chr17:2146822-2147336 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 322, 25 |
Conread position: | 18-567 |
Cow position: | chr17:20183613-20183064 (view UCSC Genome Browser custom track) |
Alignm length: | 560 |
Alignm identity: | 424 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 25 |
Conread position: | 18-588 |
Cow position: | chr17:18185912-18185343 (view UCSC Genome Browser custom track) |
Alignm length: | 586 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 27 |
Conread position: | 18-605 |
Cow position: | chr17:20401294-20401877 (view UCSC Genome Browser custom track) |
Alignm length: | 607 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 56, 25 |
Conread position: | 18-610 |
Cow position: | chr17:1658945-1658342 (view UCSC Genome Browser custom track) |
Alignm length: | 615 |
Alignm identity: | 398 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 249, 26 |
Conread position: | 19-557 |
Cow position: | chr17:16889738-16890283 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 26 |
Conread position: | 20-609 |
Cow position: | chr17:15370692-15371269 (view UCSC Genome Browser custom track) |
Alignm length: | 605 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 28 |
Conread position: | 40-503 |
Cow position: | chr17:4286729-4287187 (view UCSC Genome Browser custom track) |
Alignm length: | 475 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 43 |
Conread position: | 40-538 |
Cow position: | chr17:15143730-15143223 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 382 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 58, 51 |
Conread position: | 58-556 |
Cow position: | chr17:2587987-2588466 (view UCSC Genome Browser custom track) |
Alignm length: | 506 |
Alignm identity: | 350 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 58 |
Conread position: | 72-447 |
Cow position: | chr17:4671865-4672236 (view UCSC Genome Browser custom track) |
Alignm length: | 385 |
Alignm identity: | 250 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 8, 67 |
Conread position: | 72-537 |
Cow position: | chr17:16418167-16417695 (view UCSC Genome Browser custom track) |
Alignm length: | 480 |
Alignm identity: | 309 |
Alignm E-value: | 8.99999e-40 |
Alignm gaps (pig, cow): | 117, 74 |
Conread position: | 72-567 |
Cow position: | chr17:6259516-6260014 (view UCSC Genome Browser custom track) |
Alignm length: | 503 |
Alignm identity: | 376 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 195, 392 |
Conread position: | 74-461 |
Cow position: | chr17:14308629-14308245 (view UCSC Genome Browser custom track) |
Alignm length: | 392 |
Alignm identity: | 265 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 172, 130 |
Conread position: | 74-567 |
Cow position: | chr17:22131907-22132398 (view UCSC Genome Browser custom track) |
Alignm length: | 502 |
Alignm identity: | 378 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 193, 98 |
Conread position: | 75-567 |
Cow position: | chr17:20088056-20087574 (view UCSC Genome Browser custom track) |
Alignm length: | 499 |
Alignm identity: | 374 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 190, 118 |
Conread position: | 79-538 |
Cow position: | chr17:2287067-2287530 (view UCSC Genome Browser custom track) |
Alignm length: | 467 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 189, 112 |
Conread position: | 131-538 |
Cow position: | chr17:18027027-18026613 (view UCSC Genome Browser custom track) |
Alignm length: | 415 |
Alignm identity: | 322 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 136, 0 |
Conread position: | 139-514 |
Cow position: | chr17:2555861-2556242 (view UCSC Genome Browser custom track) |
Alignm length: | 383 |
Alignm identity: | 305 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 128, 268 |
Conread position: | 176-425 |
Cow position: | chr17:12670672-12670423 (view UCSC Genome Browser custom track) |
Alignm length: | 251 |
Alignm identity: | 170 |
Alignm E-value: | 3e-31 |
Alignm gaps (pig, cow): | 206, 85 |
Conread position: | 190-448 |
Cow position: | chr17:18849487-18849754 (view UCSC Genome Browser custom track) |
Alignm length: | 268 |
Alignm identity: | 175 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 76, 0 |
Conread position: | 192-598 |
Cow position: | chr17:40834546-40834945 (view UCSC Genome Browser custom track) |
Alignm length: | 417 |
Alignm identity: | 269 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 76, 62 |
Conread position: | 226-567 |
Cow position: | chr17:2579457-2579786 (view UCSC Genome Browser custom track) |
Alignm length: | 344 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 46 |
Conread position: | 252-539 |
Cow position: | chr17:31199792-31199519 (view UCSC Genome Browser custom track) |
Alignm length: | 295 |
Alignm identity: | 209 |
Alignm E-value: | 1e-31 |
Alignm gaps (pig, cow): | 15, 107 |
Conread position: | 254-588 |
Cow position: | chr17:40804676-40805008 (view UCSC Genome Browser custom track) |
Alignm length: | 338 |
Alignm identity: | 247 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 131, 18 |
Conread position: | 257-575 |
Cow position: | chr17:18325135-18324819 (view UCSC Genome Browser custom track) |
Alignm length: | 326 |
Alignm identity: | 215 |
Alignm E-value: | 2e-28 |
Alignm gaps (pig, cow): | 14, 84 |
Conread position: | 293-502 |
Cow position: | chr17:249834-250047 (view UCSC Genome Browser custom track) |
Alignm length: | 217 |
Alignm identity: | 169 |
Alignm E-value: | 3.99931e-42 |
Alignm gaps (pig, cow): | 91, 45 |
Conread position: | 293-545 |
Cow position: | chr17:181261-181514 (view UCSC Genome Browser custom track) |
Alignm length: | 254 |
Alignm identity: | 203 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 0 |
Conread position: | 296-567 |
Cow position: | chr17:602523-602268 (view UCSC Genome Browser custom track) |
Alignm length: | 272 |
Alignm identity: | 205 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 92, 0 |
Conread position: | 314-492 |
Cow position: | chr17:26205888-26205708 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 147 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 74, 0 |
Conread position: | 329-479 |
Cow position: | chr17:6068568-6068714 (view UCSC Genome Browser custom track) |
Alignm length: | 152 |
Alignm identity: | 114 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 56, 32 |
Conread position: | 337-572 |
Cow position: | chr17:1283763-1283530 (view UCSC Genome Browser custom track) |
Alignm length: | 237 |
Alignm identity: | 181 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 51, 204 |
Conread position: | 365-545 |
Cow position: | chr17:31768069-31767888 (view UCSC Genome Browser custom track) |
Alignm length: | 182 |
Alignm identity: | 148 |
Alignm E-value: | 4.06377e-44 |
Alignm gaps (pig, cow): | 23, 0 |
Conread position: | 365-545 |
Cow position: | chr17:43952592-43952412 (view UCSC Genome Browser custom track) |
Alignm length: | 181 |
Alignm identity: | 145 |
Alignm E-value: | 1.00053e-42 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 365-567 |
Cow position: | chr17:15323216-15323416 (view UCSC Genome Browser custom track) |
Alignm length: | 205 |
Alignm identity: | 154 |
Alignm E-value: | 2e-34 |
Alignm gaps (pig, cow): | 18, 87 |
Conread position: | 372-588 |
Cow position: | chr17:22557599-22557817 (view UCSC Genome Browser custom track) |
Alignm length: | 222 |
Alignm identity: | 159 |
Alignm E-value: | 3e-29 |
Alignm gaps (pig, cow): | 13, 69 |
Conread position: | 376-545 |
Cow position: | chr17:34156109-34156279 (view UCSC Genome Browser custom track) |
Alignm length: | 171 |
Alignm identity: | 140 |
Alignm E-value: | 9.99967e-42 |
Alignm gaps (pig, cow): | 13, 0 |
Conread position: | 385-508 |
Cow position: | chr17:36987680-36987557 (view UCSC Genome Browser custom track) |
Alignm length: | 124 |
Alignm identity: | 103 |
Alignm E-value: | 9e-30 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 403-587 |
Cow position: | chr17:14041036-14040853 (view UCSC Genome Browser custom track) |
Alignm length: | 187 |
Alignm identity: | 132 |
Alignm E-value: | 1e-22 |
Alignm gaps (pig, cow): | 38, 33 |
Conread position: | 405-514 |
Cow position: | chr17:602694-602803 (view UCSC Genome Browser custom track) |
Alignm length: | 110 |
Alignm identity: | 89 |
Alignm E-value: | 4e-23 |
Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.