Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-376 |
| Cow position: | |
| Alignm length: | 380 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 42 |
| Conread position: | 1-511 |
| Cow position: | |
| Alignm length: | 524 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 48 |
| Conread position: | 1-545 |
| Cow position: | |
| Alignm length: | 558 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 13 |
| Conread position: | 1-551 |
| Cow position: | |
| Alignm length: | 564 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-552 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-555 |
| Cow position: | |
| Alignm length: | 567 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 42 |
| Conread position: | 1-557 |
| Cow position: | |
| Alignm length: | 575 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 12 |
| Conread position: | 1-568 |
| Cow position: | |
| Alignm length: | 579 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 43 |
| Conread position: | 1-575 |
| Cow position: | |
| Alignm length: | 588 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-588 |
| Cow position: | |
| Alignm length: | 601 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-612 |
| Cow position: | |
| Alignm length: | 625 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 273, 42 |
| Conread position: | 13-239 |
| Cow position: | |
| Alignm length: | 233 |
| Alignm identity: | 175 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-276 |
| Cow position: | |
| Alignm length: | 271 |
| Alignm identity: | 198 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-286 |
| Cow position: | |
| Alignm length: | 279 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 32 |
| Conread position: | 13-286 |
| Cow position: | |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 32 |
| Conread position: | 13-552 |
| Cow position: | |
| Alignm length: | 556 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-588 |
| Cow position: | |
| Alignm length: | 586 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-588 |
| Cow position: | |
| Alignm length: | 589 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 13-609 |
| Cow position: | |
| Alignm length: | 618 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 36 |
| Conread position: | 13-609 |
| Cow position: | |
| Alignm length: | 604 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 370, 30 |
| Conread position: | 13-609 |
| Cow position: | |
| Alignm length: | 613 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 14-419 |
| Cow position: | |
| Alignm length: | 420 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 14-527 |
| Cow position: | |
| Alignm length: | 521 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 29 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 542 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 29 |
| Conread position: | 14-567 |
| Cow position: | |
| Alignm length: | 566 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 35 |
| Conread position: | 15-252 |
| Cow position: | |
| Alignm length: | 244 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-336 |
| Cow position: | |
| Alignm length: | 327 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-464 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-523 |
| Cow position: | |
| Alignm length: | 523 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-537 |
| Cow position: | |
| Alignm length: | 534 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 20 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 535 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 32 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 538 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 15-539 |
| Cow position: | |
| Alignm length: | 541 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 547 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 34 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 540 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 29 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 28 |
| Conread position: | 15-560 |
| Cow position: | |
| Alignm length: | 560 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-567 |
| Cow position: | |
| Alignm length: | 568 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 7 |
| Conread position: | 15-570 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-592 |
| Cow position: | |
| Alignm length: | 593 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-597 |
| Cow position: | |
| Alignm length: | 594 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 28 |
| Conread position: | 16-545 |
| Cow position: | |
| Alignm length: | 541 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 27 |
| Conread position: | 17-477 |
| Cow position: | |
| Alignm length: | 467 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 18-538 |
| Cow position: | |
| Alignm length: | 534 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-554 |
| Cow position: | |
| Alignm length: | 562 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 16 |
| Conread position: | 18-558 |
| Cow position: | |
| Alignm length: | 546 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 322, 25 |
| Conread position: | 18-567 |
| Cow position: | |
| Alignm length: | 560 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-588 |
| Cow position: | |
| Alignm length: | 586 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 27 |
| Conread position: | 18-605 |
| Cow position: | |
| Alignm length: | 607 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 25 |
| Conread position: | 18-610 |
| Cow position: | |
| Alignm length: | 615 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 26 |
| Conread position: | 19-557 |
| Cow position: | |
| Alignm length: | 555 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 20-609 |
| Cow position: | |
| Alignm length: | 605 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 40-503 |
| Cow position: | |
| Alignm length: | 475 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 43 |
| Conread position: | 40-538 |
| Cow position: | |
| Alignm length: | 509 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 51 |
| Conread position: | 58-556 |
| Cow position: | |
| Alignm length: | 506 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 58 |
| Conread position: | 72-447 |
| Cow position: | |
| Alignm length: | 385 |
| Alignm identity: | 250 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 8, 67 |
| Conread position: | 72-537 |
| Cow position: | |
| Alignm length: | 480 |
| Alignm identity: | 309 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 117, 74 |
| Conread position: | 72-567 |
| Cow position: | |
| Alignm length: | 503 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 392 |
| Conread position: | 74-461 |
| Cow position: | |
| Alignm length: | 392 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 130 |
| Conread position: | 74-567 |
| Cow position: | |
| Alignm length: | 502 |
| Alignm identity: | 378 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 98 |
| Conread position: | 75-567 |
| Cow position: | |
| Alignm length: | 499 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 118 |
| Conread position: | 79-538 |
| Cow position: | |
| Alignm length: | 467 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 112 |
| Conread position: | 131-538 |
| Cow position: | |
| Alignm length: | 415 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 0 |
| Conread position: | 139-514 |
| Cow position: | |
| Alignm length: | 383 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 268 |
| Conread position: | 176-425 |
| Cow position: | |
| Alignm length: | 251 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 206, 85 |
| Conread position: | 190-448 |
| Cow position: | |
| Alignm length: | 268 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 192-598 |
| Cow position: | |
| Alignm length: | 417 |
| Alignm identity: | 269 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 76, 62 |
| Conread position: | 226-567 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 46 |
| Conread position: | 252-539 |
| Cow position: | |
| Alignm length: | 295 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 254-588 |
| Cow position: | |
| Alignm length: | 338 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 131, 18 |
| Conread position: | 257-575 |
| Cow position: | |
| Alignm length: | 326 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 14, 84 |
| Conread position: | 293-502 |
| Cow position: | |
| Alignm length: | 217 |
| Alignm identity: | 169 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 91, 45 |
| Conread position: | 293-545 |
| Cow position: | |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 296-567 |
| Cow position: | |
| Alignm length: | 272 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 314-492 |
| Cow position: | |
| Alignm length: | 181 |
| Alignm identity: | 147 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 329-479 |
| Cow position: | |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 56, 32 |
| Conread position: | 337-572 |
| Cow position: | |
| Alignm length: | 237 |
| Alignm identity: | 181 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 204 |
| Conread position: | 365-545 |
| Cow position: | |
| Alignm length: | 182 |
| Alignm identity: | 148 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 365-545 |
| Cow position: | |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 365-567 |
| Cow position: | |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 18, 87 |
| Conread position: | 372-588 |
| Cow position: | |
| Alignm length: | 222 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 69 |
| Conread position: | 376-545 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 140 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 385-508 |
| Cow position: | |
| Alignm length: | 124 |
| Alignm identity: | 103 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 403-587 |
| Cow position: | |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 33 |
| Conread position: | 405-514 |
| Cow position: | |
| Alignm length: | 110 |
| Alignm identity: | 89 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.