Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-403 |
| Cow position: | chr19:55078553-55078967 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-474 |
| Cow position: | chr19:4385292-4385773 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 42 |
| Conread position: | 1-552 |
| Cow position: | chr19:7488120-7488683 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-555 |
| Cow position: | chr19:39390329-39390881 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-558 |
| Cow position: | chr19:32223621-32223067 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 44 |
| Conread position: | 1-567 |
| Cow position: | chr19:172018-172594 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 1-567 |
| Cow position: | chr19:33941419-33941993 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 2-202 |
| Cow position: | chr19:35376366-35376572 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 149 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 71, 41 |
| Conread position: | 2-604 |
| Cow position: | chr19:15953670-15954261 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 41 |
| Conread position: | 6-537 |
| Cow position: | chr19:203776-204317 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 37 |
| Conread position: | 7-558 |
| Cow position: | chr19:893790-893236 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 36 |
| Conread position: | 13-458 |
| Cow position: | chr19:35979088-35979543 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 13-467 |
| Cow position: | chr19:261257-261728 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 22 |
| Conread position: | 13-486 |
| Cow position: | chr19:40887829-40887353 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 190 |
| Conread position: | 13-502 |
| Cow position: | chr19:39688363-39688847 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 13-530 |
| Cow position: | chr19:439827-439309 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-557 |
| Cow position: | chr19:76414-75893 (view UCSC Genome Browser custom track) |
| Alignm length: | 549 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 13-561 |
| Cow position: | chr19:40852611-40852059 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 14-315 |
| Cow position: | chr19:32193396-32193711 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 227 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 14-407 |
| Cow position: | chr19:34244-34641 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 17 |
| Conread position: | 14-500 |
| Cow position: | chr19:32244500-32245002 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-537 |
| Cow position: | chr19:170920-170391 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-537 |
| Cow position: | chr19:10672486-10671951 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 15-193 |
| Cow position: | chr19:378051-377871 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 14, 9 |
| Conread position: | 15-213 |
| Cow position: | chr19:52152440-52152237 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 152 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-266 |
| Cow position: | chr19:4252536-4252284 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 30 |
| Conread position: | 15-345 |
| Cow position: | chr19:29209388-29209721 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 28 |
| Conread position: | 15-355 |
| Cow position: | chr19:548216-548536 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 240 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 75, 28 |
| Conread position: | 15-419 |
| Cow position: | chr19:30372104-30372511 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-538 |
| Cow position: | chr19:37721-38251 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 32 |
| Conread position: | 15-538 |
| Cow position: | chr19:28593097-28593619 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 362 |
| Conread position: | 15-545 |
| Cow position: | chr19:7341894-7342431 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 28 |
| Conread position: | 15-545 |
| Cow position: | chr19:32212246-32211710 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr19:43143540-43144079 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 32 |
| Conread position: | 15-557 |
| Cow position: | chr19:1031930-1032447 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-557 |
| Cow position: | chr19:32665354-32665894 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-567 |
| Cow position: | chr19:39546449-39546993 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 15-568 |
| Cow position: | chr19:416474-417046 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 17-567 |
| Cow position: | chr19:28581831-28581278 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 26 |
| Conread position: | 18-329 |
| Cow position: | chr19:27052939-27052623 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 18-388 |
| Cow position: | chr19:20125446-20125808 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 29 |
| Conread position: | 18-494 |
| Cow position: | chr19:20111396-20110944 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 313 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 60, 18 |
| Conread position: | 19-312 |
| Cow position: | chr19:4532918-4532625 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 19-538 |
| Cow position: | chr19:772424-772955 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 24-567 |
| Cow position: | chr19:359672-359099 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 19 |
| Conread position: | 31-404 |
| Cow position: | chr19:543790-543404 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 12 |
| Conread position: | 38-469 |
| Cow position: | chr19:42299653-42299209 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 107 |
| Conread position: | 40-309 |
| Cow position: | chr19:28376376-28376644 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 38, 135 |
| Conread position: | 61-545 |
| Cow position: | chr19:7450130-7449666 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 223, 79 |
| Conread position: | 72-257 |
| Cow position: | chr19:561622-561437 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-436 |
| Cow position: | chr19:31341589-31341976 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 72-537 |
| Cow position: | chr19:10517220-10516748 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 302 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 14, 107 |
| Conread position: | 74-559 |
| Cow position: | chr19:30755063-30755546 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 147 |
| Conread position: | 74-567 |
| Cow position: | chr19:33873312-33873809 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 185, 472 |
| Conread position: | 75-604 |
| Cow position: | chr19:42248701-42249233 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 110 |
| Conread position: | 85-497 |
| Cow position: | chr19:350387-349976 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 180, 226 |
| Conread position: | 92-587 |
| Cow position: | chr19:6553516-6554006 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 294, 83 |
| Conread position: | 95-442 |
| Cow position: | chr19:32785705-32785355 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 222 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 189, 167 |
| Conread position: | 133-429 |
| Cow position: | chr19:32237736-32237440 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 42 |
| Conread position: | 171-552 |
| Cow position: | chr19:35376779-35377157 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 21 |
| Conread position: | 188-538 |
| Cow position: | chr19:687065-687419 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 25 |
| Conread position: | 206-545 |
| Cow position: | chr19:52151814-52151467 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 207-539 |
| Cow position: | chr19:20104731-20105070 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 213-609 |
| Cow position: | chr19:377872-377480 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 274 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 88, 56 |
| Conread position: | 225-516 |
| Cow position: | chr19:2274338-2274044 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 31 |
| Conread position: | 244-528 |
| Cow position: | chr19:30428041-30428331 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 31, 188 |
| Conread position: | 269-539 |
| Cow position: | chr19:17018552-17018809 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 184 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 61, 12 |
| Conread position: | 288-539 |
| Cow position: | chr19:352888-352634 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 0 |
| Conread position: | 306-609 |
| Cow position: | chr19:42648989-42648683 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 174 |
| Conread position: | 340-538 |
| Cow position: | chr19:28376641-28376842 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 168 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 343-483 |
| Cow position: | chr19:4532624-4532483 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 106 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 346-538 |
| Cow position: | chr19:29209762-29209953 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 355-567 |
| Cow position: | chr19:5729000-5729212 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 201 |
| Conread position: | 357-552 |
| Cow position: | chr19:40817529-40817333 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 362-567 |
| Cow position: | chr19:439282-439084 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 377-556 |
| Cow position: | chr19:341416-341592 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 163, 0 |
| Conread position: | 393-552 |
| Cow position: | chr19:4532418-4532268 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 398-596 |
| Cow position: | chr19:42902-43106 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 142, 6 |
| Conread position: | 408-602 |
| Cow position: | chr19:27052622-27052424 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 123, 93 |
| Conread position: | 421-545 |
| Cow position: | chr19:5208411-5208535 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 448-616 |
| Cow position: | chr19:30372512-30372679 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 161, 92 |
Show alignments to all cow chromosomes.