Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-288 |
| Cow position: | chr20:35119089-35119380 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 181 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-537 |
| Cow position: | chr20:15098106-15097564 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 44 |
| Conread position: | 1-537 |
| Cow position: | chr20:25851226-25850678 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 45 |
| Conread position: | 1-567 |
| Cow position: | chr20:3270482-3271042 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 42 |
| Conread position: | 1-567 |
| Cow position: | chr20:5534706-5535277 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-567 |
| Cow position: | chr20:13762670-13763244 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-567 |
| Cow position: | chr20:23469896-23469326 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 42 |
| Conread position: | 1-567 |
| Cow position: | chr20:23798646-23799225 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 43 |
| Conread position: | 1-567 |
| Cow position: | chr20:27868961-27869537 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 2-328 |
| Cow position: | chr20:35973647-35973307 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 236 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 70, 41 |
| Conread position: | 6-331 |
| Cow position: | chr20:29572414-29572088 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 72, 30 |
| Conread position: | 6-368 |
| Cow position: | chr20:21393342-21393706 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 38 |
| Conread position: | 6-552 |
| Cow position: | chr20:7116701-7116143 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 41 |
| Conread position: | 13-261 |
| Cow position: | chr20:28593520-28593776 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 13-286 |
| Cow position: | chr20:10846302-10846021 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 60, 30 |
| Conread position: | 13-324 |
| Cow position: | chr20:10102770-10102461 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 32 |
| Conread position: | 13-334 |
| Cow position: | chr20:22717911-22717586 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 64, 26 |
| Conread position: | 13-555 |
| Cow position: | chr20:28565824-28565266 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 30 |
| Conread position: | 13-558 |
| Cow position: | chr20:21914102-21914657 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 13-567 |
| Cow position: | chr20:12438985-12438421 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-567 |
| Cow position: | chr20:28160557-28161110 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 32 |
| Conread position: | 13-572 |
| Cow position: | chr20:15064545-15065108 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 32 |
| Conread position: | 13-590 |
| Cow position: | chr20:9954194-9953617 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 436 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 254, 31 |
| Conread position: | 14-142 |
| Cow position: | chr20:11276516-11276386 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 103 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 14-261 |
| Cow position: | chr20:19192351-19192099 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-415 |
| Cow position: | chr20:11679333-11678920 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-545 |
| Cow position: | chr20:5560938-5560395 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-567 |
| Cow position: | chr20:30684116-30684660 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 15-143 |
| Cow position: | chr20:3032716-3032840 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 15-323 |
| Cow position: | chr20:4799867-4799554 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 30 |
| Conread position: | 15-538 |
| Cow position: | chr20:5483969-5484503 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-538 |
| Cow position: | chr20:19437736-19438253 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-541 |
| Cow position: | chr20:24614328-24614852 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 18-603 |
| Cow position: | chr20:18315798-18315229 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 27 |
| Conread position: | 19-538 |
| Cow position: | chr20:8313651-8313127 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 19-567 |
| Cow position: | chr20:3252351-3251794 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 26 |
| Conread position: | 28-555 |
| Cow position: | chr20:35119365-35119899 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 40-257 |
| Cow position: | chr20:24390175-24390389 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 172 |
| Conread position: | 43-336 |
| Cow position: | chr20:7085767-7085470 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 36, 226 |
| Conread position: | 45-401 |
| Cow position: | chr20:24516843-24517208 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 244 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 37, 226 |
| Conread position: | 46-604 |
| Cow position: | chr20:20905379-20904827 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 372 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 97 |
| Conread position: | 55-520 |
| Cow position: | chr20:13665379-13664921 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 69 |
| Conread position: | 59-537 |
| Cow position: | chr20:2791521-2791030 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 99 |
| Conread position: | 72-495 |
| Cow position: | chr20:20755582-20755179 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 288 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 45, 104 |
| Conread position: | 72-537 |
| Cow position: | chr20:8835791-8835327 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 62 |
| Conread position: | 72-552 |
| Cow position: | chr20:15291858-15292337 (view UCSC Genome Browser custom track) |
| Alignm length: | 486 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 77 |
| Conread position: | 74-567 |
| Cow position: | chr20:8004383-8003886 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 291 |
| Conread position: | 75-558 |
| Cow position: | chr20:22206392-22206875 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 310, 43 |
| Conread position: | 75-604 |
| Cow position: | chr20:31379039-31378503 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 100 |
| Conread position: | 87-545 |
| Cow position: | chr20:822621-823087 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 107-538 |
| Cow position: | chr20:15947518-15947067 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 339 |
| Conread position: | 108-552 |
| Cow position: | chr20:28476194-28476618 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 300 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 179, 32 |
| Conread position: | 124-538 |
| Cow position: | chr20:25960995-25961416 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 133-570 |
| Cow position: | chr20:3032965-3033406 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 42 |
| Conread position: | 136-567 |
| Cow position: | chr20:13680153-13679714 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 103 |
| Conread position: | 177-567 |
| Cow position: | chr20:29948444-29948839 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 358 |
| Conread position: | 190-487 |
| Cow position: | chr20:10841283-10840985 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 98, 82 |
| Conread position: | 193-538 |
| Cow position: | chr20:3684524-3684175 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 157 |
| Conread position: | 215-506 |
| Cow position: | chr20:28463462-28463755 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 220-539 |
| Cow position: | chr20:8993646-8993336 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 223 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 67, 16 |
| Conread position: | 283-609 |
| Cow position: | chr20:10856974-10856644 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 230 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 93, 7 |
| Conread position: | 288-490 |
| Cow position: | chr20:19367527-19367323 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 95, 130 |
| Conread position: | 297-539 |
| Cow position: | chr20:35104560-35104316 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 89, 8 |
| Conread position: | 308-604 |
| Cow position: | chr20:13434870-13434576 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 75, 98 |
| Conread position: | 332-567 |
| Cow position: | chr20:10846011-10845783 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 53, 12 |
| Conread position: | 353-538 |
| Cow position: | chr20:21393721-21393906 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 10, 14 |
| Conread position: | 378-559 |
| Cow position: | chr20:22717589-22717406 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 13, 100 |
| Conread position: | 412-545 |
| Cow position: | chr20:19495170-19495303 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 721-814 |
| Cow position: | chr20:23999183-23999275 (view UCSC Genome Browser custom track) |
| Alignm length: | 95 |
| Alignm identity: | 82 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 52, 31 |
Show alignments to all cow chromosomes.