Cow genome map

Conread name: Ss1.1-Utr1-UTR01A020092.5

Conread position: 1-277
Cow position: chr21:1190925-1191214 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-524
Cow position: chr21:48115991-48116519 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 387
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-552
Cow position: chr21:3778651-3779212 (view UCSC Genome Browser custom track)
Alignm length: 564
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 43

Conread position: 1-552
Cow position: chr21:30561685-30562248 (view UCSC Genome Browser custom track)
Alignm length: 565
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-558
Cow position: chr21:145803-146371 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 433
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 42

Conread position: 1-567
Cow position: chr21:2883851-2883290 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 42

Conread position: 1-567
Cow position: chr21:10566561-10567127 (view UCSC Genome Browser custom track)
Alignm length: 577
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 13-200
Cow position: chr21:2501833-2502015 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 135
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 66, 32

Conread position: 13-221
Cow position: chr21:27649-27851 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 156
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 66, 30

Conread position: 13-503
Cow position: chr21:47948004-47948505 (view UCSC Genome Browser custom track)
Alignm length: 504
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 30

Conread position: 13-537
Cow position: chr21:2416134-2416650 (view UCSC Genome Browser custom track)
Alignm length: 534
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-538
Cow position: chr21:7267641-7267105 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-539
Cow position: chr21:9891506-9892031 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 30

Conread position: 13-552
Cow position: chr21:20744854-20744323 (view UCSC Genome Browser custom track)
Alignm length: 550
Alignm identity: 377
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 13-555
Cow position: chr21:10849975-10850526 (view UCSC Genome Browser custom track)
Alignm length: 556
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-567
Cow position: chr21:1292277-1291732 (view UCSC Genome Browser custom track)
Alignm length: 560
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 13-567
Cow position: chr21:30600020-30599467 (view UCSC Genome Browser custom track)
Alignm length: 563
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-567
Cow position: chr21:31559760-31559197 (view UCSC Genome Browser custom track)
Alignm length: 571
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-568
Cow position: chr21:4076743-4077298 (view UCSC Genome Browser custom track)
Alignm length: 566
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 13-588
Cow position: chr21:2674742-2674133 (view UCSC Genome Browser custom track)
Alignm length: 618
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 13-604
Cow position: chr21:358911-359534 (view UCSC Genome Browser custom track)
Alignm length: 631
Alignm identity: 458
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 30

Conread position: 13-604
Cow position: chr21:2541520-2540909 (view UCSC Genome Browser custom track)
Alignm length: 616
Alignm identity: 432
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 32

Conread position: 13-609
Cow position: chr21:4183433-4184019 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 242, 32

Conread position: 14-245
Cow position: chr21:17572820-17573053 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 175
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 77, 29

Conread position: 14-286
Cow position: chr21:27708658-27708938 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 65, 35

Conread position: 14-378
Cow position: chr21:33251288-33251663 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 31

Conread position: 14-402
Cow position: chr21:2769566-2769165 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 79, 29

Conread position: 14-495
Cow position: chr21:25992724-25992229 (view UCSC Genome Browser custom track)
Alignm length: 505
Alignm identity: 327
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 12, 30

Conread position: 14-529
Cow position: chr21:37044809-37045333 (view UCSC Genome Browser custom track)
Alignm length: 526
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 14-545
Cow position: chr21:2476614-2476102 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 35

Conread position: 14-545
Cow position: chr21:4090547-4091088 (view UCSC Genome Browser custom track)
Alignm length: 545
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 14-545
Cow position: chr21:11453757-11453217 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 37

Conread position: 14-545
Cow position: chr21:12056101-12055562 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 33

Conread position: 15-198
Cow position: chr21:28529646-28529459 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 66, 28

Conread position: 15-343
Cow position: chr21:26819117-26818785 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 28

Conread position: 15-347
Cow position: chr21:3615191-3615533 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 16

Conread position: 15-359
Cow position: chr21:2716781-2716430 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 20

Conread position: 15-380
Cow position: chr21:34259315-34258957 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 267
Alignm E-value: 0
Alignm gaps (pig, cow): 196, 30

Conread position: 15-466
Cow position: chr21:4222790-4222333 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 28

Conread position: 15-484
Cow position: chr21:47939376-47939849 (view UCSC Genome Browser custom track)
Alignm length: 492
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 22

Conread position: 15-485
Cow position: chr21:3426385-3426864 (view UCSC Genome Browser custom track)
Alignm length: 481
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 32

Conread position: 15-538
Cow position: chr21:2510552-2511083 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 404
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-538
Cow position: chr21:2530229-2529696 (view UCSC Genome Browser custom track)
Alignm length: 538
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-538
Cow position: chr21:35596268-35596798 (view UCSC Genome Browser custom track)
Alignm length: 537
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 15

Conread position: 15-545
Cow position: chr21:11505484-11506035 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 15-545
Cow position: chr21:26638566-26638026 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-545
Cow position: chr21:39424960-39425502 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position: chr21:46915484-46916027 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 32

Conread position: 15-557
Cow position: chr21:34292916-34293463 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 418
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 31

Conread position: 18-486
Cow position: chr21:21947901-21947428 (view UCSC Genome Browser custom track)
Alignm length: 484
Alignm identity: 316
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 60, 25

Conread position: 18-515
Cow position: chr21:30165576-30165073 (view UCSC Genome Browser custom track)
Alignm length: 510
Alignm identity: 320
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 25, 13

Conread position: 18-551
Cow position: chr21:23860683-23861223 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 26

Conread position: 18-555
Cow position: chr21:4456730-4457275 (view UCSC Genome Browser custom track)
Alignm length: 551
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 19

Conread position: 18-567
Cow position: chr21:13124095-13123546 (view UCSC Genome Browser custom track)
Alignm length: 557
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 19-538
Cow position: chr21:36714534-36715060 (view UCSC Genome Browser custom track)
Alignm length: 533
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 24

Conread position: 40-557
Cow position: chr21:2789070-2788545 (view UCSC Genome Browser custom track)
Alignm length: 530
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 419

Conread position: 56-413
Cow position: chr21:21031675-21032034 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 231
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 22, 103

Conread position: 58-537
Cow position: chr21:26823288-26822803 (view UCSC Genome Browser custom track)
Alignm length: 493
Alignm identity: 318
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 20, 45

Conread position: 72-441
Cow position: chr21:33755267-33755636 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 102

Conread position: 72-494
Cow position: chr21:216268-216677 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 280
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 162, 72

Conread position: 72-495
Cow position: chr21:993057-992640 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 68

Conread position: 72-575
Cow position: chr21:21914244-21914751 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 194, 280

Conread position: 72-603
Cow position: chr21:6699596-6699093 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 344
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 212, 29

Conread position: 72-609
Cow position: chr21:23811835-23812382 (view UCSC Genome Browser custom track)
Alignm length: 549
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 236

Conread position: 74-566
Cow position: chr21:4590029-4589531 (view UCSC Genome Browser custom track)
Alignm length: 501
Alignm identity: 376
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 101

Conread position: 82-389
Cow position: chr21:28494965-28495278 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 197
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 35, 105

Conread position: 86-469
Cow position: chr21:32516860-32517257 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 256
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 12, 59

Conread position: 98-567
Cow position: chr21:27282372-27282845 (view UCSC Genome Browser custom track)
Alignm length: 485
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 282

Conread position: 107-538
Cow position: chr21:3194390-3194811 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 288
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 175, 66

Conread position: 109-545
Cow position: chr21:6339562-6340005 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 109-567
Cow position: chr21:8678364-8677899 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 0

Conread position: 150-493
Cow position: chr21:21926663-21926324 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 236
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 64, 8

Conread position: 162-522
Cow position: chr21:40271628-40271261 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 0

Conread position: 170-450
Cow position: chr21:34054684-34054391 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 97, 0

Conread position: 193-478
Cow position: chr21:13281978-13282265 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 194
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 89, 51

Conread position: 208-565
Cow position: chr21:21259045-21259400 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 231
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 186, 59

Conread position: 213-552
Cow position: chr21:3798271-3797925 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 0

Conread position: 216-552
Cow position: chr21:18820313-18819984 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 22

Conread position: 238-567
Cow position: chr21:2502019-2502350 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 235
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 44, 127

Conread position: 239-567
Cow position: chr21:1191295-1191622 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 26

Conread position: 242-475
Cow position: chr21:4982416-4982658 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 7, 75

Conread position: 285-545
Cow position: chr21:26650219-26650480 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 0

Conread position: 286-602
Cow position: chr21:445275-445581 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 216
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 133, 62

Conread position: 294-609
Cow position: chr21:30226206-30226522 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 284

Conread position: 307-567
Cow position: chr21:35143968-35144215 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 193
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 76, 111

Conread position: 321-537
Cow position: chr21:3615536-3615742 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 171
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 67, 31

Conread position: 369-557
Cow position: chr21:34258728-34258541 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 152
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 16, 173

Conread position: 369-567
Cow position: chr21:33251768-33251965 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 155
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 22, 70

Conread position: 382-609
Cow position: chr21:9870022-9870250 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 164
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 171, 213

Conread position: 400-538
Cow position: chr21:2716424-2716286 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 118
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 442-606
Cow position: chr21:29105-29275 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 99, 0

Show alignments to all cow chromosomes.