Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-538 |
| Cow position: | chr23:15220187-15219632 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-552 |
| Cow position: | chr23:2027405-2026846 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-552 |
| Cow position: | chr23:2795851-2795295 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-552 |
| Cow position: | chr23:4434175-4434727 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-557 |
| Cow position: | chr23:19489251-19489817 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 36 |
| Conread position: | 1-558 |
| Cow position: | chr23:28913123-28913669 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-561 |
| Cow position: | chr23:967637-967067 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 1-567 |
| Cow position: | chr23:11778196-11778774 (view UCSC Genome Browser custom track) |
| Alignm length: | 599 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 42 |
| Conread position: | 1-567 |
| Cow position: | chr23:30636591-30636015 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-568 |
| Cow position: | chr23:15525324-15525898 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-568 |
| Cow position: | chr23:27399214-27399790 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 13-183 |
| Cow position: | chr23:1330563-1330392 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 13-183 |
| Cow position: | chr23:16616142-16615971 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 13-207 |
| Cow position: | chr23:2574288-2574486 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-357 |
| Cow position: | chr23:16481631-16481296 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 239 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 13-455 |
| Cow position: | chr23:4815797-4816251 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 18 |
| Conread position: | 13-504 |
| Cow position: | chr23:34174906-34175402 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 33 |
| Conread position: | 13-552 |
| Cow position: | chr23:4888403-4888946 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 32 |
| Conread position: | 13-552 |
| Cow position: | chr23:15176797-15177344 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-566 |
| Cow position: | chr23:4509829-4510364 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 33 |
| Conread position: | 13-567 |
| Cow position: | chr23:3881972-3881419 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 13-567 |
| Cow position: | chr23:4640902-4640338 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-588 |
| Cow position: | chr23:16617128-16616540 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 14-545 |
| Cow position: | chr23:2313514-2312974 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 14-545 |
| Cow position: | chr23:4359553-4360096 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 14-545 |
| Cow position: | chr23:31446538-31447081 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 15-172 |
| Cow position: | chr23:31595453-31595291 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-218 |
| Cow position: | chr23:2765654-2765449 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 59, 30 |
| Conread position: | 15-253 |
| Cow position: | chr23:8980764-8980525 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 183 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-502 |
| Cow position: | chr23:5875047-5874559 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 15-531 |
| Cow position: | chr23:36031644-36031121 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 15-538 |
| Cow position: | chr23:4276683-4277214 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-538 |
| Cow position: | chr23:7273385-7273890 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 68, 20 |
| Conread position: | 15-538 |
| Cow position: | chr23:20301936-20302471 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-545 |
| Cow position: | chr23:19950859-19950317 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 32 |
| Conread position: | 15-545 |
| Cow position: | chr23:28217015-28217556 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 32 |
| Conread position: | 15-557 |
| Cow position: | chr23:988916-988373 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 16-567 |
| Cow position: | chr23:22147533-22146969 (view UCSC Genome Browser custom track) |
| Alignm length: | 573 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 29 |
| Conread position: | 18-567 |
| Cow position: | chr23:5779357-5778803 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 19-284 |
| Cow position: | chr23:7750121-7750388 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 59, 20 |
| Conread position: | 20-559 |
| Cow position: | chr23:4751743-4752266 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 366 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 20-567 |
| Cow position: | chr23:2757310-2757880 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 25 |
| Conread position: | 26-254 |
| Cow position: | chr23:19017441-19017663 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 27-604 |
| Cow position: | chr23:19332660-19332081 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 391 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 12 |
| Conread position: | 32-480 |
| Cow position: | chr23:1025314-1024863 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 13 |
| Conread position: | 40-537 |
| Cow position: | chr23:17184896-17185386 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 327 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 108, 37 |
| Conread position: | 41-502 |
| Cow position: | chr23:2524446-2523974 (view UCSC Genome Browser custom track) |
| Alignm length: | 475 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 140 |
| Conread position: | 58-302 |
| Cow position: | chr23:22875865-22875616 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 20, 49 |
| Conread position: | 68-610 |
| Cow position: | chr23:38578072-38578613 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 75 |
| Conread position: | 72-350 |
| Cow position: | chr23:25847081-25847361 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 140, 107 |
| Conread position: | 72-487 |
| Cow position: | chr23:3013433-3013854 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 72-555 |
| Cow position: | chr23:22945275-22944797 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 305 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 209, 130 |
| Conread position: | 72-588 |
| Cow position: | chr23:14974775-14974258 (view UCSC Genome Browser custom track) |
| Alignm length: | 526 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 22 |
| Conread position: | 73-558 |
| Cow position: | chr23:14965959-14965473 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 194, 267 |
| Conread position: | 74-415 |
| Cow position: | chr23:2340195-2340531 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 9 |
| Conread position: | 74-521 |
| Cow position: | chr23:20156445-20155973 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 0 |
| Conread position: | 79-481 |
| Cow position: | chr23:9270689-9270274 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 268 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 79, 53 |
| Conread position: | 107-539 |
| Cow position: | chr23:6216396-6216831 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 207 |
| Conread position: | 110-568 |
| Cow position: | chr23:31591983-31591513 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 113-552 |
| Cow position: | chr23:25684231-25683793 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 31 |
| Conread position: | 155-472 |
| Cow position: | chr23:3380408-3380084 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 22, 91 |
| Conread position: | 163-558 |
| Cow position: | chr23:29474676-29474277 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 111, 57 |
| Conread position: | 176-604 |
| Cow position: | chr23:1327570-1327142 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 112 |
| Conread position: | 188-537 |
| Cow position: | chr23:10903434-10903795 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 73, 36 |
| Conread position: | 205-567 |
| Cow position: | chr23:2716309-2716675 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 139 |
| Conread position: | 216-558 |
| Cow position: | chr23:2763831-2763491 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 50, 96 |
| Conread position: | 231-519 |
| Cow position: | chr23:31595292-31594996 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 231-567 |
| Cow position: | chr23:2574481-2574820 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 81 |
| Conread position: | 242-494 |
| Cow position: | chr23:19450213-19450466 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 286-597 |
| Cow position: | chr23:36211121-36210797 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 221 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 14, 20 |
| Conread position: | 290-446 |
| Cow position: | chr23:2020017-2020171 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 103, 0 |
| Conread position: | 293-502 |
| Cow position: | chr23:2782419-2782213 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 37 |
| Conread position: | 306-604 |
| Cow position: | chr23:16615970-16615667 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 113 |
| Conread position: | 312-538 |
| Cow position: | chr23:8980286-8980062 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 174 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 329-567 |
| Cow position: | chr23:29452270-29452032 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 57, 9 |
| Conread position: | 330-588 |
| Cow position: | chr23:2765403-2765146 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 207 |
| Conread position: | 330-604 |
| Cow position: | chr23:22875623-22875354 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 210, 74 |
| Conread position: | 400-610 |
| Cow position: | chr23:31650789-31650577 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 114, 53 |
Show alignments to all cow chromosomes.