Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-358 |
| Cow position: | chr24:17187342-17187704 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 1-388 |
| Cow position: | chr24:14390925-14390541 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 45 |
| Conread position: | 1-556 |
| Cow position: | chr24:6145156-6145728 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-588 |
| Cow position: | chr24:12085996-12086591 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 1-588 |
| Cow position: | chr24:19833180-19833777 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 2-591 |
| Cow position: | chr24:6351993-6352583 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 6-520 |
| Cow position: | chr24:4415722-4415202 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 6-604 |
| Cow position: | chr24:1447371-1447973 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 38 |
| Conread position: | 6-604 |
| Cow position: | chr24:6537363-6537948 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 13-262 |
| Cow position: | chr24:13181530-13181289 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 13-286 |
| Cow position: | chr24:13531725-13531448 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 13-405 |
| Cow position: | chr24:12224671-12224250 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 13-411 |
| Cow position: | chr24:39678240-39678627 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 13-516 |
| Cow position: | chr24:15392495-15392017 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 13-538 |
| Cow position: | chr24:12114225-12113702 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 13-539 |
| Cow position: | chr24:12568061-12568570 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 13-552 |
| Cow position: | chr24:14384803-14384256 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 13-591 |
| Cow position: | chr24:16649492-16648915 (view UCSC Genome Browser custom track) |
| Alignm length: | 592 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 14-236 |
| Cow position: | chr24:13021481-13021704 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 14-349 |
| Cow position: | chr24:2635929-2636272 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-358 |
| Cow position: | chr24:7060911-7061264 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 14-460 |
| Cow position: | chr24:12161690-12162140 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 14-514 |
| Cow position: | chr24:44017355-44017867 (view UCSC Genome Browser custom track) |
| Alignm length: | 514 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-545 |
| Cow position: | chr24:8029960-8030503 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-545 |
| Cow position: | chr24:9188922-9188380 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 14-545 |
| Cow position: | chr24:12485508-12484965 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-545 |
| Cow position: | chr24:22792986-22793524 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 15-538 |
| Cow position: | chr24:6434051-6434585 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-538 |
| Cow position: | chr24:33739532-33738995 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 15-538 |
| Cow position: | chr24:35838815-35838275 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 15-545 |
| Cow position: | chr24:6025286-6024746 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 391 |
| Conread position: | 15-545 |
| Cow position: | chr24:6083827-6084369 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-545 |
| Cow position: | chr24:13187998-13188525 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr24:16084850-16084307 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-588 |
| Cow position: | chr24:33933178-33933758 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 15-603 |
| Cow position: | chr24:12797950-12797353 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 17-350 |
| Cow position: | chr24:6645230-6645569 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 18-286 |
| Cow position: | chr24:12288909-12288641 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-539 |
| Cow position: | chr24:12236870-12237399 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 18-568 |
| Cow position: | chr24:14873528-14872971 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 20-286 |
| Cow position: | chr24:36296985-36297241 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 20-610 |
| Cow position: | chr24:36707673-36708263 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 15 |
| Conread position: | 36-558 |
| Cow position: | chr24:14584925-14585441 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 59-505 |
| Cow position: | chr24:14885380-14884942 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 20 |
| Conread position: | 60-537 |
| Cow position: | chr24:37321746-37321273 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 64-406 |
| Cow position: | chr24:38635622-38635967 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 71-610 |
| Cow position: | chr24:35841742-35841199 (view UCSC Genome Browser custom track) |
| Alignm length: | 555 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 72-260 |
| Cow position: | chr24:584334-584145 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 72-484 |
| Cow position: | chr24:22952008-22952427 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 72-521 |
| Cow position: | chr24:16140955-16141395 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 72-537 |
| Cow position: | chr24:6515171-6514708 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 203, 28 |
| Conread position: | 72-555 |
| Cow position: | chr24:12335920-12335413 (view UCSC Genome Browser custom track) |
| Alignm length: | 510 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 106 |
| Conread position: | 72-560 |
| Cow position: | chr24:6335571-6336053 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 72 |
| Conread position: | 72-567 |
| Cow position: | chr24:148743-148247 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 72-603 |
| Cow position: | chr24:36560211-36559671 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 191 |
| Conread position: | 73-567 |
| Cow position: | chr24:9092400-9091914 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 288 |
| Conread position: | 75-436 |
| Cow position: | chr24:12131610-12131243 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 94-545 |
| Cow position: | chr24:40548771-40549226 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-610 |
| Cow position: | chr24:40654283-40654799 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 344 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 115-538 |
| Cow position: | chr24:37216919-37217343 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 237 |
| Conread position: | 116-323 |
| Cow position: | chr24:35987428-35987228 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 125-516 |
| Cow position: | chr24:32331250-32331638 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 140, 190 |
| Conread position: | 143-555 |
| Cow position: | chr24:6660665-6660237 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 168 |
| Conread position: | 191-568 |
| Cow position: | chr24:17696976-17696604 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 206-484 |
| Cow position: | chr24:13524126-13524395 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 61 |
| Conread position: | 248-555 |
| Cow position: | chr24:29187331-29187645 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 261-591 |
| Cow position: | chr24:12288328-12287991 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 95, 165 |
| Conread position: | 265-532 |
| Cow position: | chr24:1438116-1437849 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 146 |
| Conread position: | 294-591 |
| Cow position: | chr24:584073-583781 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 82 |
| Conread position: | 295-604 |
| Cow position: | chr24:7091495-7091182 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 319-524 |
| Cow position: | chr24:6645827-6646034 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 344-529 |
| Cow position: | chr24:7061539-7061725 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 351-545 |
| Cow position: | chr24:5993072-5992877 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 377-555 |
| Cow position: | chr24:16376708-16376888 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 387-608 |
| Cow position: | chr24:14333237-14333464 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 412-545 |
| Cow position: | chr24:43813983-43814116 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-545 |
| Cow position: | chr24:6444517-6444633 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.