Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-358 |
| Cow position: | |
| Alignm length: | 370 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 44 |
| Conread position: | 1-388 |
| Cow position: | |
| Alignm length: | 394 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 45 |
| Conread position: | 1-556 |
| Cow position: | |
| Alignm length: | 578 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-588 |
| Cow position: | |
| Alignm length: | 601 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 42 |
| Conread position: | 1-588 |
| Cow position: | |
| Alignm length: | 602 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 2-591 |
| Cow position: | |
| Alignm length: | 609 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 45 |
| Conread position: | 6-520 |
| Cow position: | |
| Alignm length: | 527 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 6-604 |
| Cow position: | |
| Alignm length: | 614 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 38 |
| Conread position: | 6-604 |
| Cow position: | |
| Alignm length: | 611 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 15 |
| Conread position: | 13-262 |
| Cow position: | |
| Alignm length: | 251 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 72, 33 |
| Conread position: | 13-286 |
| Cow position: | |
| Alignm length: | 282 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 31 |
| Conread position: | 13-405 |
| Cow position: | |
| Alignm length: | 424 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 13-411 |
| Cow position: | |
| Alignm length: | 405 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 30 |
| Conread position: | 13-516 |
| Cow position: | |
| Alignm length: | 505 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 13-538 |
| Cow position: | |
| Alignm length: | 534 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 13-539 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 13-552 |
| Cow position: | |
| Alignm length: | 551 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 30 |
| Conread position: | 13-591 |
| Cow position: | |
| Alignm length: | 592 |
| Alignm identity: | 435 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 26 |
| Conread position: | 14-236 |
| Cow position: | |
| Alignm length: | 226 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 14-349 |
| Cow position: | |
| Alignm length: | 348 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-358 |
| Cow position: | |
| Alignm length: | 357 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 14-460 |
| Cow position: | |
| Alignm length: | 458 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 14-514 |
| Cow position: | |
| Alignm length: | 514 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 542 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 537 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 18 |
| Conread position: | 15-538 |
| Cow position: | |
| Alignm length: | 546 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 391 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-588 |
| Cow position: | |
| Alignm length: | 587 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 30 |
| Conread position: | 15-603 |
| Cow position: | |
| Alignm length: | 602 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 29 |
| Conread position: | 17-350 |
| Cow position: | |
| Alignm length: | 344 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 18-286 |
| Cow position: | |
| Alignm length: | 273 |
| Alignm identity: | 198 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-539 |
| Cow position: | |
| Alignm length: | 532 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 18-568 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 20-286 |
| Cow position: | |
| Alignm length: | 267 |
| Alignm identity: | 178 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 20-610 |
| Cow position: | |
| Alignm length: | 603 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 202, 15 |
| Conread position: | 36-558 |
| Cow position: | |
| Alignm length: | 531 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 59-505 |
| Cow position: | |
| Alignm length: | 457 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 20 |
| Conread position: | 60-537 |
| Cow position: | |
| Alignm length: | 491 |
| Alignm identity: | 315 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 28, 152 |
| Conread position: | 64-406 |
| Cow position: | |
| Alignm length: | 352 |
| Alignm identity: | 245 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 14, 74 |
| Conread position: | 71-610 |
| Cow position: | |
| Alignm length: | 555 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 71 |
| Conread position: | 72-260 |
| Cow position: | |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 50, 132 |
| Conread position: | 72-484 |
| Cow position: | |
| Alignm length: | 420 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 0 |
| Conread position: | 72-521 |
| Cow position: | |
| Alignm length: | 457 |
| Alignm identity: | 292 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 33, 62 |
| Conread position: | 72-537 |
| Cow position: | |
| Alignm length: | 474 |
| Alignm identity: | 306 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 203, 28 |
| Conread position: | 72-555 |
| Cow position: | |
| Alignm length: | 510 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 114, 106 |
| Conread position: | 72-560 |
| Cow position: | |
| Alignm length: | 497 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 72 |
| Conread position: | 72-567 |
| Cow position: | |
| Alignm length: | 502 |
| Alignm identity: | 368 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 74 |
| Conread position: | 72-603 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 191 |
| Conread position: | 73-567 |
| Cow position: | |
| Alignm length: | 498 |
| Alignm identity: | 375 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 190, 288 |
| Conread position: | 75-436 |
| Cow position: | |
| Alignm length: | 372 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 99 |
| Conread position: | 94-545 |
| Cow position: | |
| Alignm length: | 456 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 94-610 |
| Cow position: | |
| Alignm length: | 530 |
| Alignm identity: | 344 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 22, 62 |
| Conread position: | 115-538 |
| Cow position: | |
| Alignm length: | 433 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 237 |
| Conread position: | 116-323 |
| Cow position: | |
| Alignm length: | 209 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 149, 59 |
| Conread position: | 125-516 |
| Cow position: | |
| Alignm length: | 401 |
| Alignm identity: | 269 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 140, 190 |
| Conread position: | 143-555 |
| Cow position: | |
| Alignm length: | 430 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 168 |
| Conread position: | 191-568 |
| Cow position: | |
| Alignm length: | 383 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 91, 13 |
| Conread position: | 206-484 |
| Cow position: | |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 61 |
| Conread position: | 248-555 |
| Cow position: | |
| Alignm length: | 315 |
| Alignm identity: | 238 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 261-591 |
| Cow position: | |
| Alignm length: | 340 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 95, 165 |
| Conread position: | 265-532 |
| Cow position: | |
| Alignm length: | 269 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 22, 146 |
| Conread position: | 294-591 |
| Cow position: | |
| Alignm length: | 301 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 127, 82 |
| Conread position: | 295-604 |
| Cow position: | |
| Alignm length: | 319 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 10 |
| Conread position: | 319-524 |
| Cow position: | |
| Alignm length: | 208 |
| Alignm identity: | 164 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 344-529 |
| Cow position: | |
| Alignm length: | 187 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 351-545 |
| Cow position: | |
| Alignm length: | 196 |
| Alignm identity: | 156 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 377-555 |
| Cow position: | |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 6, 39 |
| Conread position: | 387-608 |
| Cow position: | |
| Alignm length: | 228 |
| Alignm identity: | 157 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 146, 0 |
| Conread position: | 412-545 |
| Cow position: | |
| Alignm length: | 134 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 428-545 |
| Cow position: | |
| Alignm length: | 118 |
| Alignm identity: | 93 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
Show alignments to all cow chromosomes.