Cow genome map
Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
Conread position: | 1-209 |
Cow position: | chr25:17563151-17562955 (view UCSC Genome Browser custom track) |
Alignm length: | 209 |
Alignm identity: | 149 |
Alignm E-value: | 2e-25 |
Alignm gaps (pig, cow): | 47, 0 |
Conread position: | 1-538 |
Cow position: | chr25:18276071-18275527 (view UCSC Genome Browser custom track) |
Alignm length: | 555 |
Alignm identity: | 411 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 44 |
Conread position: | 1-552 |
Cow position: | chr25:13780789-13781345 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-555 |
Cow position: | chr25:25506403-25506967 (view UCSC Genome Browser custom track) |
Alignm length: | 568 |
Alignm identity: | 425 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 77, 44 |
Conread position: | 1-567 |
Cow position: | chr25:8674668-8675243 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 435 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-567 |
Cow position: | chr25:22147248-22147823 (view UCSC Genome Browser custom track) |
Alignm length: | 580 |
Alignm identity: | 427 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 44 |
Conread position: | 1-567 |
Cow position: | chr25:26279019-26279587 (view UCSC Genome Browser custom track) |
Alignm length: | 578 |
Alignm identity: | 430 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 78, 42 |
Conread position: | 6-505 |
Cow position: | chr25:20629335-20629834 (view UCSC Genome Browser custom track) |
Alignm length: | 513 |
Alignm identity: | 380 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 73, 39 |
Conread position: | 13-358 |
Cow position: | chr25:26866990-26867362 (view UCSC Genome Browser custom track) |
Alignm length: | 374 |
Alignm identity: | 261 |
Alignm E-value: | 2e-39 |
Alignm gaps (pig, cow): | 65, 32 |
Conread position: | 13-486 |
Cow position: | chr25:18027864-18027376 (view UCSC Genome Browser custom track) |
Alignm length: | 490 |
Alignm identity: | 371 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 32 |
Conread position: | 13-539 |
Cow position: | chr25:20494127-20494651 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 356 |
Alignm E-value: | 9.80909e-45 |
Alignm gaps (pig, cow): | 70, 30 |
Conread position: | 13-539 |
Cow position: | chr25:36240312-36240850 (view UCSC Genome Browser custom track) |
Alignm length: | 548 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 30 |
Conread position: | 13-567 |
Cow position: | chr25:18890250-18889687 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 426 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 32 |
Conread position: | 13-567 |
Cow position: | chr25:34347226-34346689 (view UCSC Genome Browser custom track) |
Alignm length: | 562 |
Alignm identity: | 406 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 66, 20 |
Conread position: | 13-604 |
Cow position: | chr25:18255590-18254995 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 274, 30 |
Conread position: | 14-394 |
Cow position: | chr25:33991290-33990902 (view UCSC Genome Browser custom track) |
Alignm length: | 394 |
Alignm identity: | 295 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 29 |
Conread position: | 14-545 |
Cow position: | chr25:35362653-35362121 (view UCSC Genome Browser custom track) |
Alignm length: | 536 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 65, 29 |
Conread position: | 15-545 |
Cow position: | chr25:17589781-17589246 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 412 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 64, 28 |
Conread position: | 15-545 |
Cow position: | chr25:19916850-19917392 (view UCSC Genome Browser custom track) |
Alignm length: | 544 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 28 |
Conread position: | 15-557 |
Cow position: | chr25:11375579-11375032 (view UCSC Genome Browser custom track) |
Alignm length: | 553 |
Alignm identity: | 423 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 29 |
Conread position: | 15-560 |
Cow position: | chr25:26921998-26922540 (view UCSC Genome Browser custom track) |
Alignm length: | 558 |
Alignm identity: | 397 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 85, 32 |
Conread position: | 15-571 |
Cow position: | chr25:34656678-34656112 (view UCSC Genome Browser custom track) |
Alignm length: | 569 |
Alignm identity: | 429 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 62, 28 |
Conread position: | 15-579 |
Cow position: | chr25:14015944-14016503 (view UCSC Genome Browser custom track) |
Alignm length: | 575 |
Alignm identity: | 437 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 29 |
Conread position: | 15-588 |
Cow position: | chr25:17468926-17468353 (view UCSC Genome Browser custom track) |
Alignm length: | 584 |
Alignm identity: | 441 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 50, 30 |
Conread position: | 16-545 |
Cow position: | chr25:20777129-20776594 (view UCSC Genome Browser custom track) |
Alignm length: | 546 |
Alignm identity: | 400 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 63, 27 |
Conread position: | 18-604 |
Cow position: | chr25:12759824-12759226 (view UCSC Genome Browser custom track) |
Alignm length: | 608 |
Alignm identity: | 407 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 25 |
Conread position: | 18-609 |
Cow position: | chr25:18092789-18093388 (view UCSC Genome Browser custom track) |
Alignm length: | 610 |
Alignm identity: | 438 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 31 |
Conread position: | 18-610 |
Cow position: | chr25:11933752-11933150 (view UCSC Genome Browser custom track) |
Alignm length: | 615 |
Alignm identity: | 431 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 60, 19 |
Conread position: | 19-567 |
Cow position: | chr25:18060815-18060273 (view UCSC Genome Browser custom track) |
Alignm length: | 561 |
Alignm identity: | 405 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 59, 26 |
Conread position: | 20-249 |
Cow position: | chr25:18411519-18411283 (view UCSC Genome Browser custom track) |
Alignm length: | 241 |
Alignm identity: | 181 |
Alignm E-value: | 2e-37 |
Alignm gaps (pig, cow): | 58, 25 |
Conread position: | 24-545 |
Cow position: | chr25:32579743-32580273 (view UCSC Genome Browser custom track) |
Alignm length: | 535 |
Alignm identity: | 401 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 19 |
Conread position: | 56-445 |
Cow position: | chr25:13454985-13454598 (view UCSC Genome Browser custom track) |
Alignm length: | 398 |
Alignm identity: | 247 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 20, 132 |
Conread position: | 58-539 |
Cow position: | chr25:19288538-19288044 (view UCSC Genome Browser custom track) |
Alignm length: | 509 |
Alignm identity: | 343 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 20, 96 |
Conread position: | 71-526 |
Cow position: | chr25:33273262-33273714 (view UCSC Genome Browser custom track) |
Alignm length: | 458 |
Alignm identity: | 271 |
Alignm E-value: | 4e-24 |
Alignm gaps (pig, cow): | 32, 88 |
Conread position: | 72-367 |
Cow position: | chr25:17560782-17560476 (view UCSC Genome Browser custom track) |
Alignm length: | 311 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 210, 54 |
Conread position: | 72-506 |
Cow position: | chr25:24218284-24217850 (view UCSC Genome Browser custom track) |
Alignm length: | 441 |
Alignm identity: | 286 |
Alignm E-value: | 3.9937e-43 |
Alignm gaps (pig, cow): | 22, 185 |
Conread position: | 72-519 |
Cow position: | chr25:18231588-18232026 (view UCSC Genome Browser custom track) |
Alignm length: | 456 |
Alignm identity: | 283 |
Alignm E-value: | 5e-26 |
Alignm gaps (pig, cow): | 194, 47 |
Conread position: | 73-442 |
Cow position: | chr25:39560450-39560093 (view UCSC Genome Browser custom track) |
Alignm length: | 371 |
Alignm identity: | 246 |
Alignm E-value: | 6e-38 |
Alignm gaps (pig, cow): | 317, 59 |
Conread position: | 74-261 |
Cow position: | chr25:18302621-18302808 (view UCSC Genome Browser custom track) |
Alignm length: | 188 |
Alignm identity: | 139 |
Alignm E-value: | 1e-33 |
Alignm gaps (pig, cow): | 0, 0 |
Conread position: | 75-346 |
Cow position: | chr25:18173194-18173459 (view UCSC Genome Browser custom track) |
Alignm length: | 274 |
Alignm identity: | 197 |
Alignm E-value: | 8.99998e-41 |
Alignm gaps (pig, cow): | 190, 215 |
Conread position: | 75-609 |
Cow position: | chr25:33243690-33244187 (view UCSC Genome Browser custom track) |
Alignm length: | 539 |
Alignm identity: | 362 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 226, 100 |
Conread position: | 76-537 |
Cow position: | chr25:28030785-28030317 (view UCSC Genome Browser custom track) |
Alignm length: | 477 |
Alignm identity: | 299 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 114, 103 |
Conread position: | 96-558 |
Cow position: | chr25:12942847-12942382 (view UCSC Genome Browser custom track) |
Alignm length: | 470 |
Alignm identity: | 357 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 171, 11 |
Conread position: | 132-604 |
Cow position: | chr25:23345451-23344977 (view UCSC Genome Browser custom track) |
Alignm length: | 486 |
Alignm identity: | 340 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 21, 27 |
Conread position: | 145-554 |
Cow position: | chr25:33665967-33665552 (view UCSC Genome Browser custom track) |
Alignm length: | 422 |
Alignm identity: | 316 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 40, 96 |
Conread position: | 160-445 |
Cow position: | chr25:536877-536597 (view UCSC Genome Browser custom track) |
Alignm length: | 289 |
Alignm identity: | 194 |
Alignm E-value: | 7e-29 |
Alignm gaps (pig, cow): | 197, 40 |
Conread position: | 160-448 |
Cow position: | chr25:4761079-4760787 (view UCSC Genome Browser custom track) |
Alignm length: | 297 |
Alignm identity: | 198 |
Alignm E-value: | 7e-28 |
Alignm gaps (pig, cow): | 107, 42 |
Conread position: | 176-538 |
Cow position: | chr25:27022634-27022265 (view UCSC Genome Browser custom track) |
Alignm length: | 370 |
Alignm identity: | 283 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 91, 0 |
Conread position: | 188-558 |
Cow position: | chr25:34014539-34014170 (view UCSC Genome Browser custom track) |
Alignm length: | 375 |
Alignm identity: | 203 |
Alignm E-value: | 9.00054e-42 |
Alignm gaps (pig, cow): | 117, 240 |
Conread position: | 198-506 |
Cow position: | chr25:18421623-18421939 (view UCSC Genome Browser custom track) |
Alignm length: | 318 |
Alignm identity: | 218 |
Alignm E-value: | 7e-39 |
Alignm gaps (pig, cow): | 58, 155 |
Conread position: | 212-545 |
Cow position: | chr25:18195130-18194790 (view UCSC Genome Browser custom track) |
Alignm length: | 341 |
Alignm identity: | 260 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 55, 0 |
Conread position: | 223-524 |
Cow position: | chr25:18645863-18645553 (view UCSC Genome Browser custom track) |
Alignm length: | 314 |
Alignm identity: | 203 |
Alignm E-value: | 3e-21 |
Alignm gaps (pig, cow): | 44, 136 |
Conread position: | 246-484 |
Cow position: | chr25:3378751-3378511 (view UCSC Genome Browser custom track) |
Alignm length: | 247 |
Alignm identity: | 168 |
Alignm E-value: | 3e-22 |
Alignm gaps (pig, cow): | 21, 37 |
Conread position: | 276-567 |
Cow position: | chr25:9544103-9544388 (view UCSC Genome Browser custom track) |
Alignm length: | 293 |
Alignm identity: | 225 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 112, 32 |
Conread position: | 281-567 |
Cow position: | chr25:18303444-18303727 (view UCSC Genome Browser custom track) |
Alignm length: | 288 |
Alignm identity: | 227 |
Alignm E-value: | 0 |
Alignm gaps (pig, cow): | 104, 172 |
Conread position: | 346-545 |
Cow position: | chr25:6172015-6172211 (view UCSC Genome Browser custom track) |
Alignm length: | 200 |
Alignm identity: | 149 |
Alignm E-value: | 1e-34 |
Alignm gaps (pig, cow): | 7, 0 |
Conread position: | 393-539 |
Cow position: | chr25:17560476-17560328 (view UCSC Genome Browser custom track) |
Alignm length: | 150 |
Alignm identity: | 123 |
Alignm E-value: | 1e-32 |
Alignm gaps (pig, cow): | 45, 50 |
Conread position: | 427-588 |
Cow position: | chr25:24659444-24659601 (view UCSC Genome Browser custom track) |
Alignm length: | 162 |
Alignm identity: | 116 |
Alignm E-value: | 9e-21 |
Alignm gaps (pig, cow): | 117, 0 |
Show alignments to all cow chromosomes.