Cow genome map

Conread name: Ss1.1-Utr1-UTR01A020092.5

Conread position: 1-209
Cow position: chr25:17563151-17562955 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 149
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 47, 0

Conread position: 1-538
Cow position: chr25:18276071-18275527 (view UCSC Genome Browser custom track)
Alignm length: 555
Alignm identity: 411
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 44

Conread position: 1-552
Cow position: chr25:13780789-13781345 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-555
Cow position: chr25:25506403-25506967 (view UCSC Genome Browser custom track)
Alignm length: 568
Alignm identity: 425
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 44

Conread position: 1-567
Cow position: chr25:8674668-8675243 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position: chr25:22147248-22147823 (view UCSC Genome Browser custom track)
Alignm length: 580
Alignm identity: 427
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position: chr25:26279019-26279587 (view UCSC Genome Browser custom track)
Alignm length: 578
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 6-505
Cow position: chr25:20629335-20629834 (view UCSC Genome Browser custom track)
Alignm length: 513
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 39

Conread position: 13-358
Cow position: chr25:26866990-26867362 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 261
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 65, 32

Conread position: 13-486
Cow position: chr25:18027864-18027376 (view UCSC Genome Browser custom track)
Alignm length: 490
Alignm identity: 371
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 32

Conread position: 13-539
Cow position: chr25:20494127-20494651 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 356
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 70, 30

Conread position: 13-539
Cow position: chr25:36240312-36240850 (view UCSC Genome Browser custom track)
Alignm length: 548
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 30

Conread position: 13-567
Cow position: chr25:18890250-18889687 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-567
Cow position: chr25:34347226-34346689 (view UCSC Genome Browser custom track)
Alignm length: 562
Alignm identity: 406
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 20

Conread position: 13-604
Cow position: chr25:18255590-18254995 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 274, 30

Conread position: 14-394
Cow position: chr25:33991290-33990902 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 14-545
Cow position: chr25:35362653-35362121 (view UCSC Genome Browser custom track)
Alignm length: 536
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 15-545
Cow position: chr25:17589781-17589246 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position: chr25:19916850-19917392 (view UCSC Genome Browser custom track)
Alignm length: 544
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 28

Conread position: 15-557
Cow position: chr25:11375579-11375032 (view UCSC Genome Browser custom track)
Alignm length: 553
Alignm identity: 423
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 29

Conread position: 15-560
Cow position: chr25:26921998-26922540 (view UCSC Genome Browser custom track)
Alignm length: 558
Alignm identity: 397
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 32

Conread position: 15-571
Cow position: chr25:34656678-34656112 (view UCSC Genome Browser custom track)
Alignm length: 569
Alignm identity: 429
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 28

Conread position: 15-579
Cow position: chr25:14015944-14016503 (view UCSC Genome Browser custom track)
Alignm length: 575
Alignm identity: 437
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 29

Conread position: 15-588
Cow position: chr25:17468926-17468353 (view UCSC Genome Browser custom track)
Alignm length: 584
Alignm identity: 441
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 30

Conread position: 16-545
Cow position: chr25:20777129-20776594 (view UCSC Genome Browser custom track)
Alignm length: 546
Alignm identity: 400
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 27

Conread position: 18-604
Cow position: chr25:12759824-12759226 (view UCSC Genome Browser custom track)
Alignm length: 608
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 25

Conread position: 18-609
Cow position: chr25:18092789-18093388 (view UCSC Genome Browser custom track)
Alignm length: 610
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 31

Conread position: 18-610
Cow position: chr25:11933752-11933150 (view UCSC Genome Browser custom track)
Alignm length: 615
Alignm identity: 431
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 19

Conread position: 19-567
Cow position: chr25:18060815-18060273 (view UCSC Genome Browser custom track)
Alignm length: 561
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 26

Conread position: 20-249
Cow position: chr25:18411519-18411283 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 181
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 58, 25

Conread position: 24-545
Cow position: chr25:32579743-32580273 (view UCSC Genome Browser custom track)
Alignm length: 535
Alignm identity: 401
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 56-445
Cow position: chr25:13454985-13454598 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 247
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 132

Conread position: 58-539
Cow position: chr25:19288538-19288044 (view UCSC Genome Browser custom track)
Alignm length: 509
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 96

Conread position: 71-526
Cow position: chr25:33273262-33273714 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 271
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 32, 88

Conread position: 72-367
Cow position: chr25:17560782-17560476 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 210, 54

Conread position: 72-506
Cow position: chr25:24218284-24217850 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 286
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 22, 185

Conread position: 72-519
Cow position: chr25:18231588-18232026 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 283
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 194, 47

Conread position: 73-442
Cow position: chr25:39560450-39560093 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 246
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 317, 59

Conread position: 74-261
Cow position: chr25:18302621-18302808 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 75-346
Cow position: chr25:18173194-18173459 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 197
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 190, 215

Conread position: 75-609
Cow position: chr25:33243690-33244187 (view UCSC Genome Browser custom track)
Alignm length: 539
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 226, 100

Conread position: 76-537
Cow position: chr25:28030785-28030317 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 299
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 114, 103

Conread position: 96-558
Cow position: chr25:12942847-12942382 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 11

Conread position: 132-604
Cow position: chr25:23345451-23344977 (view UCSC Genome Browser custom track)
Alignm length: 486
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 27

Conread position: 145-554
Cow position: chr25:33665967-33665552 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 96

Conread position: 160-445
Cow position: chr25:536877-536597 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 194
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 197, 40

Conread position: 160-448
Cow position: chr25:4761079-4760787 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 107, 42

Conread position: 176-538
Cow position: chr25:27022634-27022265 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 0

Conread position: 188-558
Cow position: chr25:34014539-34014170 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 203
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 117, 240

Conread position: 198-506
Cow position: chr25:18421623-18421939 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 58, 155

Conread position: 212-545
Cow position: chr25:18195130-18194790 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 0

Conread position: 223-524
Cow position: chr25:18645863-18645553 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 203
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 44, 136

Conread position: 246-484
Cow position: chr25:3378751-3378511 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 168
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 37

Conread position: 276-567
Cow position: chr25:9544103-9544388 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 112, 32

Conread position: 281-567
Cow position: chr25:18303444-18303727 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 172

Conread position: 346-545
Cow position: chr25:6172015-6172211 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 149
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 7, 0

Conread position: 393-539
Cow position: chr25:17560476-17560328 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 50

Conread position: 427-588
Cow position: chr25:24659444-24659601 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 116
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 117, 0

Show alignments to all cow chromosomes.