Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-213 |
| Cow position: | chr26:9112240-9112457 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 155 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 78, 46 |
| Conread position: | 1-276 |
| Cow position: | chr26:6850400-6850119 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 1-529 |
| Cow position: | chr26:9563584-9563045 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-555 |
| Cow position: | chr26:5674941-5675498 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 188 |
| Conread position: | 1-567 |
| Cow position: | chr26:19351739-19351165 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 6-447 |
| Cow position: | chr26:16904559-16905003 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 43 |
| Conread position: | 13-404 |
| Cow position: | chr26:20254857-20255242 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 18 |
| Conread position: | 13-567 |
| Cow position: | chr26:17397144-17396582 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 14-334 |
| Cow position: | chr26:11537046-11536719 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 214 |
| Conread position: | 14-538 |
| Cow position: | chr26:3031022-3030507 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 28 |
| Conread position: | 14-545 |
| Cow position: | chr26:11254271-11253727 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 34 |
| Conread position: | 15-245 |
| Cow position: | chr26:23605112-23604878 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 178 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-538 |
| Cow position: | chr26:8869665-8870204 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 400 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 15-545 |
| Cow position: | chr26:2198415-2198955 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-545 |
| Cow position: | chr26:2352570-2352031 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-545 |
| Cow position: | chr26:12588777-12588236 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr26:15144969-15144431 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 15-545 |
| Cow position: | chr26:18854876-18855417 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-552 |
| Cow position: | chr26:3691595-3692127 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 15-557 |
| Cow position: | chr26:12574605-12574071 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 18-285 |
| Cow position: | chr26:12665764-12666034 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 60, 26 |
| Conread position: | 18-552 |
| Cow position: | chr26:30589578-30589036 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 20-567 |
| Cow position: | chr26:4605389-4604840 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 23 |
| Conread position: | 72-203 |
| Cow position: | chr26:6602056-6602188 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 116, 0 |
| Conread position: | 72-556 |
| Cow position: | chr26:12656145-12656609 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 20 |
| Conread position: | 74-389 |
| Cow position: | chr26:5551628-5551946 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 138, 76 |
| Conread position: | 75-195 |
| Cow position: | chr26:9850771-9850649 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 75-195 |
| Cow position: | chr26:9854237-9854115 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 75-251 |
| Cow position: | chr26:12659837-12659661 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 79-286 |
| Cow position: | chr26:9845755-9845548 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 191, 102 |
| Conread position: | 81-566 |
| Cow position: | chr26:25033820-25034312 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 299 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 173, 270 |
| Conread position: | 88-521 |
| Cow position: | chr26:20262726-20263155 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 88 |
| Conread position: | 107-537 |
| Cow position: | chr26:1602322-1601872 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 295 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 9, 64 |
| Conread position: | 109-286 |
| Cow position: | chr26:21350263-21350441 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 156, 58 |
| Conread position: | 114-540 |
| Cow position: | chr26:9118214-9118642 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 269 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 34, 48 |
| Conread position: | 164-545 |
| Cow position: | chr26:30782686-30783072 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 9 |
| Conread position: | 190-538 |
| Cow position: | chr26:8918818-8919172 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 214-545 |
| Cow position: | chr26:18852211-18852548 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 204 |
| Conread position: | 238-502 |
| Cow position: | chr26:23603751-23603481 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 94 |
| Conread position: | 238-538 |
| Cow position: | chr26:9112753-9113060 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 238-539 |
| Cow position: | chr26:12666123-12666425 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 238-609 |
| Cow position: | chr26:9845555-9845195 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 38 |
| Conread position: | 269-568 |
| Cow position: | chr26:6849388-6849087 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 28 |
| Conread position: | 278-469 |
| Cow position: | chr26:4334206-4334398 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 154 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 278-545 |
| Cow position: | chr26:4806480-4806232 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 200 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 278-604 |
| Cow position: | chr26:9849864-9849531 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 140 |
| Conread position: | 278-604 |
| Cow position: | chr26:9853374-9853042 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 48 |
| Conread position: | 400-568 |
| Cow position: | chr26:20255384-20255550 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 133, 76 |
Show alignments to all cow chromosomes.