Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-537 |
| Cow position: | chr27:26324525-26325074 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-558 |
| Cow position: | chr27:9993490-9992927 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 431 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 1-559 |
| Cow position: | chr27:25805170-25804616 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 44 |
| Conread position: | 1-567 |
| Cow position: | chr27:892923-893493 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 420 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-567 |
| Cow position: | chr27:14460745-14460171 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 6-557 |
| Cow position: | chr27:5910583-5911138 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 13-329 |
| Cow position: | chr27:25999333-25999018 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 65, 138 |
| Conread position: | 13-538 |
| Cow position: | chr27:23334886-23335437 (view UCSC Genome Browser custom track) |
| Alignm length: | 557 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-555 |
| Cow position: | chr27:27662617-27663171 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-604 |
| Cow position: | chr27:26556252-26555674 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 14-545 |
| Cow position: | chr27:15541052-15541595 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-567 |
| Cow position: | chr27:1209075-1209637 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 15-496 |
| Cow position: | chr27:2364476-2364968 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 32 |
| Conread position: | 15-538 |
| Cow position: | chr27:16439055-16439587 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 246, 28 |
| Conread position: | 15-567 |
| Cow position: | chr27:25002802-25002250 (view UCSC Genome Browser custom track) |
| Alignm length: | 561 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-587 |
| Cow position: | chr27:15278340-15277765 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 18-260 |
| Cow position: | chr27:3996648-3996401 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-526 |
| Cow position: | chr27:26227028-26227535 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 28 |
| Conread position: | 18-545 |
| Cow position: | chr27:16034665-16034128 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 18-557 |
| Cow position: | chr27:27051392-27051959 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 24-415 |
| Cow position: | chr27:22746286-22745894 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 70-439 |
| Cow position: | chr27:25160473-25160853 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 11, 89 |
| Conread position: | 72-336 |
| Cow position: | chr27:20138887-20138617 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 78, 7 |
| Conread position: | 72-409 |
| Cow position: | chr27:28890514-28890855 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 231 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 195, 85 |
| Conread position: | 83-538 |
| Cow position: | chr27:10011039-10010605 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 212, 179 |
| Conread position: | 122-272 |
| Cow position: | chr27:8561425-8561578 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 144-622 |
| Cow position: | chr27:22316443-22316933 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 319 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 134, 6 |
| Conread position: | 157-567 |
| Cow position: | chr27:16432296-16432701 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 45 |
| Conread position: | 158-545 |
| Cow position: | chr27:27753324-27752930 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 154 |
| Conread position: | 188-526 |
| Cow position: | chr27:29565472-29565130 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 57, 45 |
| Conread position: | 191-537 |
| Cow position: | chr27:18560290-18560640 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 223 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 172 |
| Conread position: | 205-610 |
| Cow position: | chr27:26035136-26034724 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 262 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 63, 269 |
| Conread position: | 217-495 |
| Cow position: | chr27:27197438-27197169 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 50, 151 |
| Conread position: | 221-552 |
| Cow position: | chr27:15638420-15638084 (view UCSC Genome Browser custom track) |
| Alignm length: | 340 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 238 |
| Conread position: | 306-603 |
| Cow position: | chr27:8561572-8561873 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 365-538 |
| Cow position: | chr27:28078533-28078706 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 22, 57 |
Show alignments to all cow chromosomes.