Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-195 |
| Cow position: | |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-374 |
| Cow position: | |
| Alignm length: | 387 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 1-524 |
| Cow position: | |
| Alignm length: | 534 |
| Alignm identity: | 390 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-529 |
| Cow position: | |
| Alignm length: | 537 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-537 |
| Cow position: | |
| Alignm length: | 550 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 30 |
| Conread position: | 1-552 |
| Cow position: | |
| Alignm length: | 566 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 45 |
| Conread position: | 1-566 |
| Cow position: | |
| Alignm length: | 580 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 42 |
| Conread position: | 1-567 |
| Cow position: | |
| Alignm length: | 578 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 38 |
| Conread position: | 1-567 |
| Cow position: | |
| Alignm length: | 574 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 22 |
| Conread position: | 1-567 |
| Cow position: | |
| Alignm length: | 587 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-588 |
| Cow position: | |
| Alignm length: | 602 |
| Alignm identity: | 433 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-588 |
| Cow position: | |
| Alignm length: | 599 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-588 |
| Cow position: | |
| Alignm length: | 601 |
| Alignm identity: | 448 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 44 |
| Conread position: | 1-589 |
| Cow position: | |
| Alignm length: | 602 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 2-603 |
| Cow position: | |
| Alignm length: | 614 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 41 |
| Conread position: | 6-567 |
| Cow position: | |
| Alignm length: | 582 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 13-147 |
| Cow position: | |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 13-147 |
| Cow position: | |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 13-260 |
| Cow position: | |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 237, 30 |
| Conread position: | 13-433 |
| Cow position: | |
| Alignm length: | 433 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 13-538 |
| Cow position: | |
| Alignm length: | 536 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-566 |
| Cow position: | |
| Alignm length: | 567 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-566 |
| Cow position: | |
| Alignm length: | 570 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-566 |
| Cow position: | |
| Alignm length: | 567 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 13-567 |
| Cow position: | |
| Alignm length: | 569 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 13-567 |
| Cow position: | |
| Alignm length: | 568 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-567 |
| Cow position: | |
| Alignm length: | 568 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-593 |
| Cow position: | |
| Alignm length: | 594 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-609 |
| Cow position: | |
| Alignm length: | 605 |
| Alignm identity: | 443 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 31 |
| Conread position: | 14-254 |
| Cow position: | |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 65, 23 |
| Conread position: | 14-386 |
| Cow position: | |
| Alignm length: | 386 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 35 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 33 |
| Conread position: | 14-545 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 14-567 |
| Cow position: | |
| Alignm length: | 564 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 31 |
| Conread position: | 15-213 |
| Cow position: | |
| Alignm length: | 206 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 74, 28 |
| Conread position: | 15-350 |
| Cow position: | |
| Alignm length: | 348 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 15-358 |
| Cow position: | |
| Alignm length: | 356 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-424 |
| Cow position: | |
| Alignm length: | 419 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 34 |
| Conread position: | 15-446 |
| Cow position: | |
| Alignm length: | 444 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-534 |
| Cow position: | |
| Alignm length: | 533 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 34 |
| Conread position: | 15-537 |
| Cow position: | |
| Alignm length: | 544 |
| Alignm identity: | 397 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 28 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | |
| Alignm length: | 541 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-552 |
| Cow position: | |
| Alignm length: | 545 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 15-557 |
| Cow position: | |
| Alignm length: | 552 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 15-557 |
| Cow position: | |
| Alignm length: | 551 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 31 |
| Conread position: | 15-557 |
| Cow position: | |
| Alignm length: | 551 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 28 |
| Conread position: | 16-484 |
| Cow position: | |
| Alignm length: | 482 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 17-520 |
| Cow position: | |
| Alignm length: | 513 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 17-539 |
| Cow position: | |
| Alignm length: | 529 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 20-492 |
| Cow position: | |
| Alignm length: | 489 |
| Alignm identity: | 298 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 60, 27 |
| Conread position: | 21-567 |
| Cow position: | |
| Alignm length: | 558 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 24 |
| Conread position: | 27-251 |
| Cow position: | |
| Alignm length: | 230 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 18 |
| Conread position: | 35-388 |
| Cow position: | |
| Alignm length: | 364 |
| Alignm identity: | 244 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 40, 297 |
| Conread position: | 40-475 |
| Cow position: | |
| Alignm length: | 444 |
| Alignm identity: | 292 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 38, 211 |
| Conread position: | 40-589 |
| Cow position: | |
| Alignm length: | 567 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 100 |
| Conread position: | 49-275 |
| Cow position: | |
| Alignm length: | 230 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 148, 36 |
| Conread position: | 61-545 |
| Cow position: | |
| Alignm length: | 493 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 21 |
| Conread position: | 71-551 |
| Cow position: | |
| Alignm length: | 501 |
| Alignm identity: | 325 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 72-409 |
| Cow position: | |
| Alignm length: | 346 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 17, 10 |
| Conread position: | 72-508 |
| Cow position: | |
| Alignm length: | 463 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 241 |
| Conread position: | 72-539 |
| Cow position: | |
| Alignm length: | 490 |
| Alignm identity: | 311 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 30, 68 |
| Conread position: | 72-550 |
| Cow position: | |
| Alignm length: | 483 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 9 |
| Conread position: | 72-551 |
| Cow position: | |
| Alignm length: | 498 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 35 |
| Conread position: | 72-557 |
| Cow position: | |
| Alignm length: | 492 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 19 |
| Conread position: | 74-531 |
| Cow position: | |
| Alignm length: | 461 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 98 |
| Conread position: | 74-564 |
| Cow position: | |
| Alignm length: | 494 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 98 |
| Conread position: | 74-604 |
| Cow position: | |
| Alignm length: | 543 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 11 |
| Conread position: | 94-545 |
| Cow position: | |
| Alignm length: | 460 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 218 |
| Conread position: | 108-537 |
| Cow position: | |
| Alignm length: | 438 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 157, 386 |
| Conread position: | 114-282 |
| Cow position: | |
| Alignm length: | 171 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 151, 12 |
| Conread position: | 114-529 |
| Cow position: | |
| Alignm length: | 427 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 153, 116 |
| Conread position: | 122-539 |
| Cow position: | |
| Alignm length: | 422 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 197, 52 |
| Conread position: | 123-528 |
| Cow position: | |
| Alignm length: | 414 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 18 |
| Conread position: | 128-555 |
| Cow position: | |
| Alignm length: | 435 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 203 |
| Conread position: | 136-448 |
| Cow position: | |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 146, 125 |
| Conread position: | 143-514 |
| Cow position: | |
| Alignm length: | 379 |
| Alignm identity: | 236 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 129, 86 |
| Conread position: | 143-545 |
| Cow position: | |
| Alignm length: | 410 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 231 |
| Conread position: | 152-559 |
| Cow position: | |
| Alignm length: | 409 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 237, 118 |
| Conread position: | 165-577 |
| Cow position: | |
| Alignm length: | 427 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 190-496 |
| Cow position: | |
| Alignm length: | 309 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 190-516 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 168 |
| Conread position: | 190-516 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 168 |
| Conread position: | 194-557 |
| Cow position: | |
| Alignm length: | 373 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 355 |
| Conread position: | 202-545 |
| Cow position: | |
| Alignm length: | 350 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 194 |
| Conread position: | 213-537 |
| Cow position: | |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 54, 35 |
| Conread position: | 214-591 |
| Cow position: | |
| Alignm length: | 391 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 141 |
| Conread position: | 218-602 |
| Cow position: | |
| Alignm length: | 398 |
| Alignm identity: | 254 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 71, 37 |
| Conread position: | 219-537 |
| Cow position: | |
| Alignm length: | 328 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 67, 31 |
| Conread position: | 238-557 |
| Cow position: | |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 40, 27 |
| Conread position: | 278-586 |
| Cow position: | |
| Alignm length: | 310 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 277 |
| Conread position: | 299-558 |
| Cow position: | |
| Alignm length: | 270 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 304-545 |
| Cow position: | |
| Alignm length: | 248 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 312-542 |
| Cow position: | |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 147, 79 |
| Conread position: | 346-545 |
| Cow position: | |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 48, 27 |
| Conread position: | 355-591 |
| Cow position: | |
| Alignm length: | 245 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 362-552 |
| Cow position: | |
| Alignm length: | 192 |
| Alignm identity: | 150 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 21, 123 |
| Conread position: | 404-604 |
| Cow position: | |
| Alignm length: | 207 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 131, 42 |
| Conread position: | 412-545 |
| Cow position: | |
| Alignm length: | 134 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 465-603 |
| Cow position: | |
| Alignm length: | 140 |
| Alignm identity: | 104 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 105, 112 |
Show alignments to all cow chromosomes.