Cow genome map
| Conread name: | Ss1.1-Utr1-UTR01A020092.5 |
| Conread position: | 1-283 |
| Cow position: | chr5:4384767-4385053 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 98, 42 |
| Conread position: | 1-501 |
| Cow position: | chr5:61273630-61273138 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 266, 44 |
| Conread position: | 1-509 |
| Cow position: | chr5:3504709-3504193 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-538 |
| Cow position: | chr5:49119740-49119195 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-545 |
| Cow position: | chr5:44459020-44459576 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-561 |
| Cow position: | chr5:3785349-3785894 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 44 |
| Conread position: | 1-567 |
| Cow position: | chr5:24098185-24098762 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 43 |
| Conread position: | 1-567 |
| Cow position: | chr5:37731883-37732459 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 432 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-567 |
| Cow position: | chr5:48809176-48808602 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 45 |
| Conread position: | 1-567 |
| Cow position: | chr5:54793080-54792522 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-568 |
| Cow position: | chr5:57483009-57482431 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 44 |
| Conread position: | 1-575 |
| Cow position: | chr5:10918335-10918916 (view UCSC Genome Browser custom track) |
| Alignm length: | 588 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 44 |
| Conread position: | 1-588 |
| Cow position: | chr5:2913988-2914581 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 42 |
| Conread position: | 1-588 |
| Cow position: | chr5:34696122-34696734 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 454 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 26 |
| Conread position: | 2-147 |
| Cow position: | chr5:6519430-6519575 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 116 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 77, 41 |
| Conread position: | 2-557 |
| Cow position: | chr5:29008898-29009455 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 41 |
| Conread position: | 6-553 |
| Cow position: | chr5:30578865-30579425 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 37 |
| Conread position: | 6-567 |
| Cow position: | chr5:55627547-55628099 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 41 |
| Conread position: | 13-219 |
| Cow position: | chr5:23716395-23716189 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 65, 22 |
| Conread position: | 13-253 |
| Cow position: | chr5:30088169-30087927 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 65, 33 |
| Conread position: | 13-495 |
| Cow position: | chr5:1342246-1341755 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-498 |
| Cow position: | chr5:6158647-6158152 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 367 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 32 |
| Conread position: | 13-506 |
| Cow position: | chr5:26090276-26089778 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 13-537 |
| Cow position: | chr5:2430582-2430047 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 13-537 |
| Cow position: | chr5:64782467-64781932 (view UCSC Genome Browser custom track) |
| Alignm length: | 539 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-545 |
| Cow position: | chr5:54932668-54932125 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 34 |
| Conread position: | 13-552 |
| Cow position: | chr5:416170-415622 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-552 |
| Cow position: | chr5:4068540-4069088 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 33 |
| Conread position: | 13-552 |
| Cow position: | chr5:32945430-32945974 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 13-558 |
| Cow position: | chr5:31102047-31101503 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-558 |
| Cow position: | chr5:46739035-46738479 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 30 |
| Conread position: | 13-604 |
| Cow position: | chr5:46659274-46659874 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 13-604 |
| Cow position: | chr5:49593909-49593297 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 14-242 |
| Cow position: | chr5:12681957-12681725 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 175, 8 |
| Conread position: | 14-254 |
| Cow position: | chr5:59144332-59144575 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-374 |
| Cow position: | chr5:53714807-53715175 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 14-409 |
| Cow position: | chr5:18665512-18665919 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 14-538 |
| Cow position: | chr5:26079668-26079132 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-538 |
| Cow position: | chr5:32772032-32772568 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 37 |
| Conread position: | 14-545 |
| Cow position: | chr5:3964021-3964545 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-545 |
| Cow position: | chr5:29042062-29042604 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 412 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 29 |
| Conread position: | 14-549 |
| Cow position: | chr5:24576463-24577010 (view UCSC Genome Browser custom track) |
| Alignm length: | 550 |
| Alignm identity: | 413 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 540 |
| Conread position: | 15-229 |
| Cow position: | chr5:35299615-35299834 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 170 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-346 |
| Cow position: | chr5:10844323-10843981 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 30 |
| Conread position: | 15-369 |
| Cow position: | chr5:46005832-46005460 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 31 |
| Conread position: | 15-430 |
| Cow position: | chr5:25207187-25206762 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 15-469 |
| Cow position: | chr5:63480315-63479859 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 285 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 54, 24 |
| Conread position: | 15-519 |
| Cow position: | chr5:24329851-24330341 (view UCSC Genome Browser custom track) |
| Alignm length: | 512 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-534 |
| Cow position: | chr5:14379714-14380244 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 32 |
| Conread position: | 15-538 |
| Cow position: | chr5:27909716-27909186 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 15-538 |
| Cow position: | chr5:45699832-45700352 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 15-538 |
| Cow position: | chr5:46644261-46644773 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 28 |
| Conread position: | 15-545 |
| Cow position: | chr5:2530822-2531364 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr5:4019647-4019105 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr5:10776701-10776171 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 402 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr5:31706126-31706667 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 404 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 15-545 |
| Cow position: | chr5:45182550-45182010 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 28 |
| Conread position: | 15-545 |
| Cow position: | chr5:46663553-46664096 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 32 |
| Conread position: | 15-545 |
| Cow position: | chr5:59060176-59060711 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 28 |
| Conread position: | 15-557 |
| Cow position: | chr5:39165245-39164698 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 424 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 29 |
| Conread position: | 15-557 |
| Cow position: | chr5:49181833-49182371 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 30 |
| Conread position: | 15-565 |
| Cow position: | chr5:41551373-41550816 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 408 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 30 |
| Conread position: | 15-567 |
| Cow position: | chr5:9686862-9686313 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 28 |
| Conread position: | 16-299 |
| Cow position: | chr5:27569703-27570000 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 29 |
| Conread position: | 16-537 |
| Cow position: | chr5:39417168-39417693 (view UCSC Genome Browser custom track) |
| Alignm length: | 542 |
| Alignm identity: | 336 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 62, 27 |
| Conread position: | 16-545 |
| Cow position: | chr5:58195555-58196095 (view UCSC Genome Browser custom track) |
| Alignm length: | 543 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 17-545 |
| Cow position: | chr5:46775639-46776173 (view UCSC Genome Browser custom track) |
| Alignm length: | 547 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 17-567 |
| Cow position: | chr5:7273419-7273941 (view UCSC Genome Browser custom track) |
| Alignm length: | 560 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 28 |
| Conread position: | 18-282 |
| Cow position: | chr5:51771790-51771521 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-347 |
| Cow position: | chr5:7811992-7811661 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 224 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 61, 28 |
| Conread position: | 18-463 |
| Cow position: | chr5:49101194-49101645 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-538 |
| Cow position: | chr5:28031040-28031563 (view UCSC Genome Browser custom track) |
| Alignm length: | 527 |
| Alignm identity: | 388 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 25 |
| Conread position: | 18-539 |
| Cow position: | chr5:32674181-32673653 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 25 |
| Conread position: | 18-545 |
| Cow position: | chr5:47831550-47831020 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 25 |
| Conread position: | 18-555 |
| Cow position: | chr5:46630870-46630332 (view UCSC Genome Browser custom track) |
| Alignm length: | 556 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 25 |
| Conread position: | 18-604 |
| Cow position: | chr5:41530014-41529432 (view UCSC Genome Browser custom track) |
| Alignm length: | 600 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 19-537 |
| Cow position: | chr5:32733689-32733167 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 24 |
| Conread position: | 20-538 |
| Cow position: | chr5:26769370-26769890 (view UCSC Genome Browser custom track) |
| Alignm length: | 531 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 15 |
| Conread position: | 20-545 |
| Cow position: | chr5:48468720-48468186 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 27 |
| Conread position: | 20-588 |
| Cow position: | chr5:27652434-27651848 (view UCSC Genome Browser custom track) |
| Alignm length: | 596 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 25 |
| Conread position: | 24-539 |
| Cow position: | chr5:28022728-28023240 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 21 |
| Conread position: | 24-545 |
| Cow position: | chr5:59481815-59482346 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 19 |
| Conread position: | 24-552 |
| Cow position: | chr5:49518227-49518758 (view UCSC Genome Browser custom track) |
| Alignm length: | 538 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 24-569 |
| Cow position: | chr5:23227821-23228345 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 354 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 53, 22 |
| Conread position: | 24-604 |
| Cow position: | chr5:61020279-61019705 (view UCSC Genome Browser custom track) |
| Alignm length: | 595 |
| Alignm identity: | 396 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 19 |
| Conread position: | 25-396 |
| Cow position: | chr5:56858135-56857761 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 46-503 |
| Cow position: | chr5:47073493-47073952 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 316 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 35, 51 |
| Conread position: | 46-537 |
| Cow position: | chr5:51861484-51861015 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 318 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 49-287 |
| Cow position: | chr5:27488604-27488848 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 49-359 |
| Cow position: | chr5:27683180-27682864 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 49-419 |
| Cow position: | chr5:57366432-57366057 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 263 |
| Conread position: | 58-567 |
| Cow position: | chr5:28006803-28007302 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 97 |
| Conread position: | 64-545 |
| Cow position: | chr5:6589416-6588927 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 374 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 72-244 |
| Cow position: | chr5:23767912-23768078 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 134, 73 |
| Conread position: | 72-281 |
| Cow position: | chr5:18653621-18653830 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 207, 134 |
| Conread position: | 72-411 |
| Cow position: | chr5:16104151-16103819 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 150, 13 |
| Conread position: | 72-463 |
| Cow position: | chr5:32310353-32309962 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 170, 245 |
| Conread position: | 72-510 |
| Cow position: | chr5:26508058-26508494 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 183, 195 |
| Conread position: | 72-520 |
| Cow position: | chr5:27038847-27039286 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 293 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 204, 83 |
| Conread position: | 72-524 |
| Cow position: | chr5:76123937-76123509 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 302 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 315, 69 |
| Conread position: | 72-537 |
| Cow position: | chr5:14346760-14346294 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 191, 70 |
| Conread position: | 72-551 |
| Cow position: | chr5:53627145-53626663 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 24 |
| Conread position: | 72-557 |
| Cow position: | chr5:34202560-34203037 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 76 |
| Conread position: | 72-610 |
| Cow position: | chr5:51162530-51163066 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 213, 19 |
| Conread position: | 74-536 |
| Cow position: | chr5:39442678-39443130 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 163, 17 |
| Conread position: | 74-537 |
| Cow position: | chr5:14659473-14659018 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 19 |
| Conread position: | 75-610 |
| Cow position: | chr5:49128859-49129383 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 336 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 453, 32 |
| Conread position: | 77-439 |
| Cow position: | chr5:55097090-55096725 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 78-355 |
| Cow position: | chr5:58061217-58060936 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 189, 87 |
| Conread position: | 81-525 |
| Cow position: | chr5:41933193-41932757 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 287 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 81-557 |
| Cow position: | chr5:41962612-41962127 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 75 |
| Conread position: | 83-539 |
| Cow position: | chr5:28335207-28334738 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 166, 0 |
| Conread position: | 96-436 |
| Cow position: | chr5:4088442-4088789 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 0 |
| Conread position: | 101-603 |
| Cow position: | chr5:58334941-58334443 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 313 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 291, 154 |
| Conread position: | 107-610 |
| Cow position: | chr5:25000999-25000486 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 19 |
| Conread position: | 112-496 |
| Cow position: | chr5:51319589-51319203 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 19, 33 |
| Conread position: | 114-610 |
| Cow position: | chr5:26069058-26068564 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 135 |
| Conread position: | 122-487 |
| Cow position: | chr5:39872082-39872436 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 157, 30 |
| Conread position: | 136-460 |
| Cow position: | chr5:58819957-58819626 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 144-604 |
| Cow position: | chr5:52433662-52434125 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 142, 32 |
| Conread position: | 152-450 |
| Cow position: | chr5:5318063-5317759 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 0 |
| Conread position: | 202-477 |
| Cow position: | chr5:32249796-32250070 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 83, 52 |
| Conread position: | 207-603 |
| Cow position: | chr5:23755873-23755477 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 274 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 65, 309 |
| Conread position: | 209-557 |
| Cow position: | chr5:20972282-20971944 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 103 |
| Conread position: | 218-406 |
| Cow position: | chr5:52805126-52805320 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 49, 96 |
| Conread position: | 220-572 |
| Cow position: | chr5:24108825-24108473 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 239 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 50, 8 |
| Conread position: | 229-486 |
| Cow position: | chr5:5786829-5786573 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 196 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 54 |
| Conread position: | 229-603 |
| Cow position: | chr5:39247606-39247253 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 23, 53 |
| Conread position: | 237-539 |
| Cow position: | chr5:31202839-31202542 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 46 |
| Conread position: | 238-408 |
| Cow position: | chr5:27060465-27060292 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 29, 15 |
| Conread position: | 242-539 |
| Cow position: | chr5:27001399-27001694 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 245-544 |
| Cow position: | chr5:73489769-73489468 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 193 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 140, 0 |
| Conread position: | 272-610 |
| Cow position: | chr5:27489063-27489412 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 53 |
| Conread position: | 278-555 |
| Cow position: | chr5:57977084-57977363 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 147 |
| Conread position: | 287-597 |
| Cow position: | chr5:33185611-33185913 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 99, 164 |
| Conread position: | 293-455 |
| Cow position: | chr5:18653885-18654048 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 293-531 |
| Cow position: | chr5:29436129-29435889 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 185 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 90, 192 |
| Conread position: | 295-537 |
| Cow position: | chr5:51771456-51771208 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 304-498 |
| Cow position: | chr5:17774189-17773994 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 158 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 304-567 |
| Cow position: | chr5:4385108-4385358 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 79, 23 |
| Conread position: | 304-567 |
| Cow position: | chr5:12644087-12643819 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 138 |
| Conread position: | 307-545 |
| Cow position: | chr5:23960461-23960222 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 150 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 340-557 |
| Cow position: | chr5:27570000-27570213 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 172 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 48, 25 |
| Conread position: | 352-538 |
| Cow position: | chr5:10843520-10843333 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 151 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 365-545 |
| Cow position: | chr5:9042950-9043131 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 368-554 |
| Cow position: | chr5:18271523-18271714 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 86 |
| Conread position: | 369-609 |
| Cow position: | chr5:27682828-27682575 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 25, 90 |
| Conread position: | 385-533 |
| Cow position: | chr5:25206759-25206603 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 123 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 18, 0 |
| Conread position: | 400-609 |
| Cow position: | chr5:27059176-27058958 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 400-609 |
| Cow position: | chr5:27060079-27059861 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 163 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 133, 0 |
| Conread position: | 411-545 |
| Cow position: | chr5:18665953-18666087 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 413-552 |
| Cow position: | chr5:6611972-6612111 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 417-604 |
| Cow position: | chr5:40053424-40053608 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 112, 58 |
| Conread position: | 418-537 |
| Cow position: | chr5:18122502-18122383 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 418-545 |
| Cow position: | chr5:10482814-10482941 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 103 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 431-545 |
| Cow position: | chr5:4089050-4089164 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 91 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 434-545 |
| Cow position: | chr5:35299835-35299946 (view UCSC Genome Browser custom track) |
| Alignm length: | 112 |
| Alignm identity: | 93 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 435-545 |
| Cow position: | chr5:56145038-56144928 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.