Cow genome map

Conread name: Ss1.1-Utr1-UTR01A020092.5

Conread position: 1-306
Cow position:
Alignm length: 318
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 42

Conread position: 1-382
Cow position:
Alignm length: 388
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 264, 12

Conread position: 1-555
Cow position:
Alignm length: 568
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-567
Cow position:
Alignm length: 577
Alignm identity: 440
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-567
Cow position:
Alignm length: 581
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position:
Alignm length: 576
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 44

Conread position: 1-567
Cow position:
Alignm length: 583
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-567
Cow position:
Alignm length: 581
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 266, 42

Conread position: 1-567
Cow position:
Alignm length: 588
Alignm identity: 435
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 44

Conread position: 1-588
Cow position:
Alignm length: 599
Alignm identity: 442
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 42

Conread position: 1-610
Cow position:
Alignm length: 622
Alignm identity: 460
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 43

Conread position: 2-244
Cow position:
Alignm length: 246
Alignm identity: 179
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 100, 41

Conread position: 6-378
Cow position:
Alignm length: 380
Alignm identity: 249
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 73, 37

Conread position: 6-567
Cow position:
Alignm length: 575
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 39

Conread position: 6-588
Cow position:
Alignm length: 596
Alignm identity: 446
Alignm E-value: 0
Alignm gaps (pig, cow): 74, 29

Conread position: 6-610
Cow position:
Alignm length: 620
Alignm identity: 450
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 37

Conread position: 13-222
Cow position:
Alignm length: 216
Alignm identity: 159
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 66, 30

Conread position: 13-252
Cow position:
Alignm length: 246
Alignm identity: 175
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 65, 32

Conread position: 13-388
Cow position:
Alignm length: 385
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 22

Conread position: 13-521
Cow position:
Alignm length: 522
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-522
Cow position:
Alignm length: 517
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 52, 30

Conread position: 13-544
Cow position:
Alignm length: 563
Alignm identity: 415
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-552
Cow position:
Alignm length: 548
Alignm identity: 403
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 25

Conread position: 13-552
Cow position:
Alignm length: 554
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-554
Cow position:
Alignm length: 561
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 30

Conread position: 13-555
Cow position:
Alignm length: 548
Alignm identity: 412
Alignm E-value: 0
Alignm gaps (pig, cow): 269, 30

Conread position: 13-557
Cow position:
Alignm length: 558
Alignm identity: 420
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 32

Conread position: 13-558
Cow position:
Alignm length: 550
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 33

Conread position: 13-558
Cow position:
Alignm length: 559
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 26

Conread position: 13-567
Cow position:
Alignm length: 571
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 18

Conread position: 13-567
Cow position:
Alignm length: 561
Alignm identity: 424
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 30

Conread position: 13-567
Cow position:
Alignm length: 575
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 32

Conread position: 13-567
Cow position:
Alignm length: 566
Alignm identity: 426
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-567
Cow position:
Alignm length: 559
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 32

Conread position: 13-597
Cow position:
Alignm length: 606
Alignm identity: 454
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 26

Conread position: 13-602
Cow position:
Alignm length: 619
Alignm identity: 451
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 30

Conread position: 13-604
Cow position:
Alignm length: 605
Alignm identity: 438
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 234

Conread position: 13-609
Cow position:
Alignm length: 611
Alignm identity: 445
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 30

Conread position: 13-609
Cow position:
Alignm length: 619
Alignm identity: 468
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 30

Conread position: 14-386
Cow position:
Alignm length: 385
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 14-472
Cow position:
Alignm length: 474
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 14-534
Cow position:
Alignm length: 525
Alignm identity: 396
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 31

Conread position: 14-545
Cow position:
Alignm length: 541
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 228, 33

Conread position: 14-545
Cow position:
Alignm length: 545
Alignm identity: 417
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 33

Conread position: 14-545
Cow position:
Alignm length: 545
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 31

Conread position: 14-552
Cow position:
Alignm length: 547
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 31

Conread position: 14-558
Cow position:
Alignm length: 556
Alignm identity: 421
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 29

Conread position: 14-567
Cow position:
Alignm length: 567
Alignm identity: 428
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 29

Conread position: 14-567
Cow position:
Alignm length: 569
Alignm identity: 430
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 31

Conread position: 15-142
Cow position:
Alignm length: 130
Alignm identity: 102
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 63, 28

Conread position: 15-335
Cow position:
Alignm length: 329
Alignm identity: 209
Alignm E-value: 8e-25
Alignm gaps (pig, cow): 64, 148

Conread position: 15-368
Cow position:
Alignm length: 366
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 28

Conread position: 15-480
Cow position:
Alignm length: 472
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 31

Conread position: 15-482
Cow position:
Alignm length: 478
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 32

Conread position: 15-483
Cow position:
Alignm length: 484
Alignm identity: 362
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 24

Conread position: 15-501
Cow position:
Alignm length: 498
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 9

Conread position: 15-531
Cow position:
Alignm length: 534
Alignm identity: 399
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 28

Conread position: 15-538
Cow position:
Alignm length: 540
Alignm identity: 410
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 31

Conread position: 15-545
Cow position:
Alignm length: 545
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 29

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 416
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position:
Alignm length: 544
Alignm identity: 413
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 32

Conread position: 15-545
Cow position:
Alignm length: 546
Alignm identity: 414
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 28

Conread position: 15-545
Cow position:
Alignm length: 542
Alignm identity: 398
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 28

Conread position: 15-545
Cow position:
Alignm length: 539
Alignm identity: 405
Alignm E-value: 0
Alignm gaps (pig, cow): 148, 28

Conread position: 15-545
Cow position:
Alignm length: 538
Alignm identity: 386
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 32

Conread position: 18-530
Cow position:
Alignm length: 524
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 110

Conread position: 18-537
Cow position:
Alignm length: 533
Alignm identity: 348
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 59, 28

Conread position: 18-556
Cow position:
Alignm length: 544
Alignm identity: 341
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 367, 19

Conread position: 18-560
Cow position:
Alignm length: 554
Alignm identity: 374
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 27

Conread position: 18-588
Cow position:
Alignm length: 586
Alignm identity: 422
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 27

Conread position: 19-430
Cow position:
Alignm length: 421
Alignm identity: 272
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 58, 20

Conread position: 19-548
Cow position:
Alignm length: 539
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 28

Conread position: 20-308
Cow position:
Alignm length: 301
Alignm identity: 202
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 58, 23

Conread position: 20-557
Cow position:
Alignm length: 569
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 54, 25

Conread position: 21-517
Cow position:
Alignm length: 508
Alignm identity: 320
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 57, 28

Conread position: 24-370
Cow position:
Alignm length: 353
Alignm identity: 226
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 56, 19

Conread position: 24-545
Cow position:
Alignm length: 535
Alignm identity: 409
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 19

Conread position: 24-545
Cow position:
Alignm length: 533
Alignm identity: 407
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 25

Conread position: 27-604
Cow position:
Alignm length: 588
Alignm identity: 394
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 16

Conread position: 40-604
Cow position:
Alignm length: 587
Alignm identity: 378
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 137

Conread position: 45-526
Cow position:
Alignm length: 496
Alignm identity: 324
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 32, 92

Conread position: 55-209
Cow position:
Alignm length: 158
Alignm identity: 124
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 21, 10

Conread position: 55-418
Cow position:
Alignm length: 368
Alignm identity: 242
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 235, 40

Conread position: 58-261
Cow position:
Alignm length: 205
Alignm identity: 149
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 23, 118

Conread position: 58-610
Cow position:
Alignm length: 570
Alignm identity: 368
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 390

Conread position: 61-602
Cow position:
Alignm length: 547
Alignm identity: 344
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 43, 15

Conread position: 63-446
Cow position:
Alignm length: 401
Alignm identity: 252
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 30, 18

Conread position: 72-236
Cow position:
Alignm length: 165
Alignm identity: 131
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 103, 0

Conread position: 72-241
Cow position:
Alignm length: 171
Alignm identity: 121
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 99, 0

Conread position: 72-338
Cow position:
Alignm length: 273
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 141

Conread position: 72-406
Cow position:
Alignm length: 338
Alignm identity: 216
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 84

Conread position: 72-499
Cow position:
Alignm length: 440
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 239

Conread position: 72-538
Cow position:
Alignm length: 470
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 197, 191

Conread position: 72-545
Cow position:
Alignm length: 475
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 313, 174

Conread position: 72-545
Cow position:
Alignm length: 481
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 195, 0

Conread position: 72-559
Cow position:
Alignm length: 495
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 103

Conread position: 72-568
Cow position:
Alignm length: 511
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 24

Conread position: 72-588
Cow position:
Alignm length: 524
Alignm identity: 390
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 382

Conread position: 72-609
Cow position:
Alignm length: 548
Alignm identity: 408
Alignm E-value: 0
Alignm gaps (pig, cow): 314, 101

Conread position: 73-539
Cow position:
Alignm length: 472
Alignm identity: 307
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 207, 177

Conread position: 74-477
Cow position:
Alignm length: 411
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 191, 5

Conread position: 74-538
Cow position:
Alignm length: 466
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 181, 34

Conread position: 74-548
Cow position:
Alignm length: 479
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 152

Conread position: 74-608
Cow position:
Alignm length: 543
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 85

Conread position: 75-376
Cow position:
Alignm length: 306
Alignm identity: 215
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 212, 170

Conread position: 75-417
Cow position:
Alignm length: 345
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 178, 99

Conread position: 75-511
Cow position:
Alignm length: 438
Alignm identity: 294
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 308, 110

Conread position: 75-531
Cow position:
Alignm length: 462
Alignm identity: 290
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 180, 121

Conread position: 77-443
Cow position:
Alignm length: 374
Alignm identity: 233
Alignm E-value: 9e-26
Alignm gaps (pig, cow): 64, 78

Conread position: 77-570
Cow position:
Alignm length: 524
Alignm identity: 349
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 134, 41

Conread position: 78-567
Cow position:
Alignm length: 497
Alignm identity: 380
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 469

Conread position: 87-411
Cow position:
Alignm length: 334
Alignm identity: 220
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 163, 65

Conread position: 95-610
Cow position:
Alignm length: 522
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 186

Conread position: 101-552
Cow position:
Alignm length: 461
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 121, 74

Conread position: 107-557
Cow position:
Alignm length: 459
Alignm identity: 303
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 146, 73

Conread position: 114-248
Cow position:
Alignm length: 135
Alignm identity: 101
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 114-424
Cow position:
Alignm length: 317
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 139, 61

Conread position: 117-350
Cow position:
Alignm length: 235
Alignm identity: 160
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 135, 25

Conread position: 124-552
Cow position:
Alignm length: 437
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 141, 0

Conread position: 142-609
Cow position:
Alignm length: 472
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 185, 96

Conread position: 157-607
Cow position:
Alignm length: 463
Alignm identity: 292
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 125, 103

Conread position: 161-595
Cow position:
Alignm length: 452
Alignm identity: 293
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 118, 72

Conread position: 162-610
Cow position:
Alignm length: 458
Alignm identity: 296
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 126, 86

Conread position: 165-532
Cow position:
Alignm length: 379
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 139

Conread position: 177-538
Cow position:
Alignm length: 367
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 203

Conread position: 178-610
Cow position:
Alignm length: 443
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 90, 177

Conread position: 187-539
Cow position:
Alignm length: 361
Alignm identity: 237
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 80, 15

Conread position: 197-538
Cow position:
Alignm length: 354
Alignm identity: 226
Alignm E-value: 7e-24
Alignm gaps (pig, cow): 96, 36

Conread position: 205-543
Cow position:
Alignm length: 346
Alignm identity: 236
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 62, 104

Conread position: 216-538
Cow position:
Alignm length: 324
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 173, 38

Conread position: 239-539
Cow position:
Alignm length: 303
Alignm identity: 218
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 62, 9

Conread position: 254-557
Cow position:
Alignm length: 308
Alignm identity: 201
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 130, 155

Conread position: 257-455
Cow position:
Alignm length: 202
Alignm identity: 143
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 10, 78

Conread position: 277-538
Cow position:
Alignm length: 263
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 0

Conread position: 278-545
Cow position:
Alignm length: 269
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 110, 0

Conread position: 297-580
Cow position:
Alignm length: 292
Alignm identity: 215
Alignm E-value: 5.99756e-43
Alignm gaps (pig, cow): 235, 93

Conread position: 304-545
Cow position:
Alignm length: 243
Alignm identity: 193
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 0

Conread position: 305-545
Cow position:
Alignm length: 242
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 0

Conread position: 305-609
Cow position:
Alignm length: 311
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 99

Conread position: 310-566
Cow position:
Alignm length: 258
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 73, 231

Conread position: 313-609
Cow position:
Alignm length: 305
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 98

Conread position: 325-597
Cow position:
Alignm length: 282
Alignm identity: 205
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 59, 0

Conread position: 370-597
Cow position:
Alignm length: 235
Alignm identity: 180
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 18, 218

Conread position: 393-538
Cow position:
Alignm length: 146
Alignm identity: 118
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 22, 0

Conread position: 400-567
Cow position:
Alignm length: 168
Alignm identity: 135
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 13, 0

Conread position: 408-609
Cow position:
Alignm length: 214
Alignm identity: 164
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 132, 0

Conread position: 414-570
Cow position:
Alignm length: 158
Alignm identity: 115
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 24, 29

Show alignments to all cow chromosomes.