Cow genome map

Conread name: Ss1.1-Utr1-UTR01A040081.5

Conread position: 1-129
Cow position: chr25:16001655-16001527 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 101, 18

Conread position: 1-135
Cow position: chr25:7329417-7329553 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 109
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 99, 19

Conread position: 1-135
Cow position: chr25:14224934-14224799 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 49

Conread position: 1-138
Cow position: chr25:32588010-32587871 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 104
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 0

Conread position: 1-139
Cow position: chr25:4002668-4002810 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 1-140
Cow position: chr25:5514879-5515023 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 86, 0

Conread position: 1-140
Cow position: chr25:9961304-9961164 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 25, 109

Conread position: 1-140
Cow position: chr25:12824152-12824008 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 19, 0

Conread position: 1-140
Cow position: chr25:23323073-23323209 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 115
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 98, 0

Conread position: 1-148
Cow position: chr25:6121898-6121752 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 100

Conread position: 1-151
Cow position: chr25:1838106-1838257 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 121
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 98, 89

Conread position: 1-153
Cow position: chr25:12081453-12081298 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 18, 0

Conread position: 1-153
Cow position: chr25:21042252-21042408 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 97, 18

Conread position: 1-153
Cow position: chr25:31732466-31732314 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 97, 20

Conread position: 1-153
Cow position: chr25:31732864-31732712 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 97, 20

Conread position: 1-154
Cow position: chr25:1735443-1735297 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 19, 0

Conread position: 1-154
Cow position: chr25:17658482-17658634 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 99, 39

Conread position: 1-154
Cow position: chr25:26654778-26654935 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 128
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 98, 0

Conread position: 1-155
Cow position: chr25:7216700-7216859 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 99, 18

Conread position: 1-155
Cow position: chr25:9957171-9957014 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 130
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 99, 115

Conread position: 1-155
Cow position: chr25:11315779-11315932 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 125
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 37

Conread position: 1-155
Cow position: chr25:16064758-16064916 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 99, 0

Conread position: 1-155
Cow position: chr25:18988249-18988414 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 20, 0

Conread position: 1-155
Cow position: chr25:20785715-20785562 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 103, 6

Conread position: 1-155
Cow position: chr25:22297149-22296997 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 1-155
Cow position: chr25:23779456-23779306 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 10, 58

Conread position: 1-155
Cow position: chr25:25861487-25861328 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 86, 20

Conread position: 1-156
Cow position: chr25:61526-61675 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 62

Conread position: 1-156
Cow position: chr25:5474357-5474205 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 81

Conread position: 1-156
Cow position: chr25:9002544-9002697 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 106, 0

Conread position: 1-156
Cow position: chr25:10218181-10218024 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 1-156
Cow position: chr25:12997461-12997619 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 153

Conread position: 1-156
Cow position: chr25:15440911-15440761 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 17, 119

Conread position: 1-156
Cow position: chr25:17566454-17566612 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 86

Conread position: 1-156
Cow position: chr25:17914649-17914805 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 17, 129

Conread position: 1-156
Cow position: chr25:18905754-18905910 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 131
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 98, 0

Conread position: 1-156
Cow position: chr25:20216702-20216859 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 89, 0

Conread position: 1-156
Cow position: chr25:21895017-21894859 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 105, 22

Conread position: 1-156
Cow position: chr25:24504629-24504475 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 115
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 98, 55

Conread position: 1-156
Cow position: chr25:24651582-24651428 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 99, 0

Conread position: 1-156
Cow position: chr25:26087388-26087545 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 20, 77

Conread position: 1-156
Cow position: chr25:26270065-26269912 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 89, 45

Conread position: 1-156
Cow position: chr25:26700906-26701055 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 101, 18

Conread position: 1-156
Cow position: chr25:28188079-28187920 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 14, 123

Conread position: 1-156
Cow position: chr25:36081746-36081900 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 122
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 103, 18

Conread position: 1-156
Cow position: chr25:36761975-36762130 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 101, 55

Conread position: 1-157
Cow position: chr25:12204337-12204501 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 153

Conread position: 1-158
Cow position: chr25:12755623-12755460 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 130
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 19, 0

Conread position: 1-181
Cow position: chr25:9754220-9754047 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 2-139
Cow position: chr25:3982914-3983048 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 100, 17

Conread position: 2-152
Cow position: chr25:26679098-26679247 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 2-154
Cow position: chr25:19317128-19317289 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 21, 120

Conread position: 2-155
Cow position: chr25:14791624-14791781 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 98, 18

Conread position: 2-155
Cow position: chr25:15377198-15377351 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 98, 18

Conread position: 2-155
Cow position: chr25:20008005-20008156 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 17, 0

Conread position: 2-156
Cow position: chr25:13672262-13672420 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 2-156
Cow position: chr25:36779366-36779526 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 126
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 97, 0

Conread position: 3-150
Cow position: chr25:5791932-5791781 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 102

Conread position: 3-153
Cow position: chr25:35333029-35333182 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 0

Conread position: 3-155
Cow position: chr25:3373501-3373355 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 100, 16

Conread position: 3-155
Cow position: chr25:11131452-11131608 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 96, 16

Conread position: 3-156
Cow position: chr25:21893207-21893363 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 95, 16

Conread position: 4-156
Cow position: chr25:16921918-16921772 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 122
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 94, 16

Conread position: 4-156
Cow position: chr25:18202054-18201901 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 7-156
Cow position: chr25:36535562-36535408 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 9-153
Cow position: chr25:31704877-31705025 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 90, 0

Conread position: 10-155
Cow position: chr25:22730712-22730853 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 91, 39

Conread position: 11-156
Cow position: chr25:26133919-26134067 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 89, 80

Conread position: 12-136
Cow position: chr25:14945572-14945445 (view UCSC Genome Browser custom track)
Alignm length: 128
Alignm identity: 100
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 0

Conread position: 12-139
Cow position: chr25:13642432-13642302 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 80, 0

Conread position: 12-140
Cow position: chr25:13569291-13569163 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 12-152
Cow position: chr25:22332644-22332782 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 117
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 111, 0

Conread position: 12-155
Cow position: chr25:17342335-17342482 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 0

Conread position: 12-155
Cow position: chr25:21245723-21245580 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 86, 13

Conread position: 12-155
Cow position: chr25:30816765-30816913 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 122
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 0

Conread position: 12-155
Cow position: chr25:38425241-38425385 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 116
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 88, 0

Conread position: 12-156
Cow position: chr25:11066266-11066118 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 12-156
Cow position: chr25:12840843-12840693 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 12-156
Cow position: chr25:16714388-16714244 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 57

Conread position: 12-156
Cow position: chr25:25827352-25827496 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 80, 23

Conread position: 13-154
Cow position: chr25:8157630-8157480 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 13-155
Cow position: chr25:13640264-13640405 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 125, 0

Conread position: 13-155
Cow position: chr25:27801167-27801306 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 115
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 92, 0

Conread position: 13-156
Cow position: chr25:10504457-10504312 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 108
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 86, 55

Conread position: 13-156
Cow position: chr25:14512991-14513140 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 57, 0

Conread position: 13-156
Cow position: chr25:20133432-20133289 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 74, 79

Conread position: 14-141
Cow position: chr25:17119626-17119754 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 88, 66

Conread position: 14-154
Cow position: chr25:30618946-30619087 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 92, 7

Conread position: 15-156
Cow position: chr25:12097724-12097865 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 89, 62

Conread position: 15-156
Cow position: chr25:20069606-20069746 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 63, 0

Conread position: 15-156
Cow position: chr25:22751127-22750982 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 54, 78

Conread position: 21-155
Cow position: chr25:1824207-1824073 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 79, 45

Conread position: 21-156
Cow position: chr25:18487559-18487693 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 76, 60

Conread position: 22-154
Cow position: chr25:12252923-12252785 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 111
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 81, 0

Conread position: 49-153
Cow position: chr25:9349364-9349259 (view UCSC Genome Browser custom track)
Alignm length: 106
Alignm identity: 89
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 52, 0

Show alignments to all cow chromosomes.