Cow genome map

Conread name: Ss1.1-Utr1-UTR01A040081.5

Conread position: 1-135
Cow position: chr28:26784590-26784452 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 107
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 22, 0

Conread position: 1-138
Cow position: chr28:22170841-22170695 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 19, 0

Conread position: 1-139
Cow position: chr28:19222721-19222587 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 112
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 10, 77

Conread position: 1-140
Cow position: chr28:118176-118034 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 112
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 100, 0

Conread position: 1-140
Cow position: chr28:5773516-5773652 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 97, 29

Conread position: 1-142
Cow position: chr28:7590305-7590163 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 106
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 1-143
Cow position: chr28:6307766-6307911 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 10, 82

Conread position: 1-148
Cow position: chr28:33894134-33893986 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 18, 106

Conread position: 1-153
Cow position: chr28:25728075-25728228 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 108, 0

Conread position: 1-153
Cow position: chr28:26269207-26269360 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 119
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 61, 11

Conread position: 1-154
Cow position: chr28:5931229-5931386 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 79, 44

Conread position: 1-154
Cow position: chr28:8408611-8408764 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 98, 18

Conread position: 1-154
Cow position: chr28:12951305-12951452 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 76, 80

Conread position: 1-154
Cow position: chr28:16085200-16085355 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 98, 64

Conread position: 1-154
Cow position: chr28:25459404-25459564 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 1-154
Cow position: chr28:25806448-25806603 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 103, 95

Conread position: 1-155
Cow position: chr28:4282613-4282459 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 100, 38

Conread position: 1-155
Cow position: chr28:5144645-5144490 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 124
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 44

Conread position: 1-155
Cow position: chr28:5817719-5817871 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 77, 68

Conread position: 1-155
Cow position: chr28:8347607-8347762 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 101, 0

Conread position: 1-155
Cow position: chr28:18760170-18760017 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 93, 26

Conread position: 1-155
Cow position: chr28:19262712-19262556 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 93, 0

Conread position: 1-155
Cow position: chr28:26103587-26103737 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 21, 33

Conread position: 1-155
Cow position: chr28:34430546-34430392 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-156
Cow position: chr28:616261-616418 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 121
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 98, 19

Conread position: 1-156
Cow position: chr28:751105-751259 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 10, 91

Conread position: 1-156
Cow position: chr28:3078804-3078649 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 94, 21

Conread position: 1-156
Cow position: chr28:7698104-7697946 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 96, 0

Conread position: 1-156
Cow position: chr28:10057715-10057555 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 17, 0

Conread position: 1-156
Cow position: chr28:11346608-11346455 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 88, 0

Conread position: 1-156
Cow position: chr28:11866788-11866633 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 99, 18

Conread position: 1-156
Cow position: chr28:12672584-12672433 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 1-156
Cow position: chr28:16252984-16252824 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 128
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 99, 89

Conread position: 1-156
Cow position: chr28:18354447-18354296 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 127
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 1-156
Cow position: chr28:21502271-21502424 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 10, 23

Conread position: 1-156
Cow position: chr28:25249231-25249386 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 82, 23

Conread position: 1-156
Cow position: chr28:25283084-25283232 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 104, 32

Conread position: 1-156
Cow position: chr28:26743495-26743658 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 18, 96

Conread position: 1-156
Cow position: chr28:28903793-28903631 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 126
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 1-156
Cow position: chr28:31110129-31109972 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 0

Conread position: 1-156
Cow position: chr28:34230107-34230260 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 77, 0

Conread position: 1-157
Cow position: chr28:16243882-16243734 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 1-158
Cow position: chr28:33051905-33052070 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 131
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 87, 18

Conread position: 1-179
Cow position: chr28:23007857-23007676 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 137
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 99, 18

Conread position: 1-179
Cow position: chr28:23676017-23676192 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 18

Conread position: 1-179
Cow position: chr28:26719227-26719397 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 1-182
Cow position: chr28:30746851-30746673 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 101, 11

Conread position: 2-140
Cow position: chr28:4022262-4022404 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 94, 0

Conread position: 2-140
Cow position: chr28:10478466-10478327 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 96, 0

Conread position: 2-156
Cow position: chr28:1837871-1838025 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 19

Conread position: 2-156
Cow position: chr28:13267663-13267825 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 2-157
Cow position: chr28:1538046-1538199 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 15, 62

Conread position: 3-140
Cow position: chr28:19394495-19394635 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 33

Conread position: 3-143
Cow position: chr28:22739670-22739811 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 112
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 102, 0

Conread position: 3-155
Cow position: chr28:10529607-10529459 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 61

Conread position: 3-156
Cow position: chr28:3449178-3449335 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 16, 90

Conread position: 3-156
Cow position: chr28:9099814-9099968 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 45

Conread position: 4-136
Cow position: chr28:7547447-7547315 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 98, 15

Conread position: 4-155
Cow position: chr28:11786833-11786687 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 99, 53

Conread position: 4-155
Cow position: chr28:21355104-21355262 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 96, 17

Conread position: 4-156
Cow position: chr28:18790893-18791048 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 120
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 77, 0

Conread position: 4-156
Cow position: chr28:19079965-19079813 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 75

Conread position: 4-156
Cow position: chr28:21598374-21598220 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 95, 15

Conread position: 7-155
Cow position: chr28:23724572-23724431 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 115
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 0

Conread position: 8-155
Cow position: chr28:3726766-3726917 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 109

Conread position: 9-156
Cow position: chr28:4881354-4881208 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 121
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 14, 82

Conread position: 9-156
Cow position: chr28:18370123-18369975 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 90, 11

Conread position: 10-147
Cow position: chr28:10053448-10053306 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 89, 0

Conread position: 11-153
Cow position: chr28:26922481-26922339 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 11-155
Cow position: chr28:4308018-4307866 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 89, 0

Conread position: 11-156
Cow position: chr28:4643878-4643738 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 108
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 38, 0

Conread position: 12-130
Cow position: chr28:5838427-5838545 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 93
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 12-153
Cow position: chr28:23410438-23410294 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 119
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 137

Conread position: 12-154
Cow position: chr28:2898885-2899019 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 111
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 12-154
Cow position: chr28:27161441-27161296 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 87, 0

Conread position: 12-155
Cow position: chr28:20313162-20313308 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 119
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 62, 53

Conread position: 12-156
Cow position: chr28:5826837-5826982 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 120
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 27, 0

Conread position: 12-156
Cow position: chr28:17288104-17288248 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 79

Conread position: 12-156
Cow position: chr28:19564341-19564196 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 88, 36

Conread position: 12-156
Cow position: chr28:26982850-26982706 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 13-150
Cow position: chr28:5553055-5552912 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 86, 0

Conread position: 13-154
Cow position: chr28:21380766-21380911 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 117
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 86, 0

Conread position: 13-156
Cow position: chr28:1632768-1632625 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 28, 123

Conread position: 13-156
Cow position: chr28:3011385-3011237 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 74, 0

Conread position: 13-156
Cow position: chr28:5166654-5166800 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 116
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 51, 56

Conread position: 13-156
Cow position: chr28:13865730-13865878 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 69, 0

Conread position: 13-156
Cow position: chr28:23447936-23447792 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 90, 0

Conread position: 13-156
Cow position: chr28:27218212-27218355 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 91, 98

Conread position: 14-139
Cow position: chr28:9390475-9390348 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 85, 24

Conread position: 14-139
Cow position: chr28:10606739-10606610 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 100
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 85, 0

Conread position: 14-156
Cow position: chr28:2752605-2752462 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 78, 16

Conread position: 15-156
Cow position: chr28:26685004-26685149 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 90, 129

Conread position: 15-156
Cow position: chr28:32365736-32365876 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 85, 24

Conread position: 16-155
Cow position: chr28:7009086-7008947 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 16-156
Cow position: chr28:12363270-12363125 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 110
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 49, 0

Conread position: 17-199
Cow position: chr28:13607777-13607962 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 82, 125

Conread position: 20-156
Cow position: chr28:5792601-5792740 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 109
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 21, 17

Conread position: 29-140
Cow position: chr28:20968956-20968844 (view UCSC Genome Browser custom track)
Alignm length: 113
Alignm identity: 91
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 72, 0

Conread position: 38-156
Cow position: chr28:8147949-8147831 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 95
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.