Cow genome map

Conread name: Ss1.1-Utr1-UTR01A040081.5

Conread position: 1-125
Cow position: chr29:31899104-31898976 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 104
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 92

Conread position: 1-129
Cow position: chr29:16657558-16657692 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 108
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 1-135
Cow position: chr29:456924-456784 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 110
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 36, 91

Conread position: 1-138
Cow position: chr29:28195644-28195508 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 110
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 99, 0

Conread position: 1-138
Cow position: chr29:40891828-40891689 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 19, 110

Conread position: 1-142
Cow position: chr29:11696400-11696541 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 108
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 95, 18

Conread position: 1-144
Cow position: chr29:30188470-30188324 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 120
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 99, 0

Conread position: 1-146
Cow position: chr29:16756928-16757072 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 129, 78

Conread position: 1-149
Cow position: chr29:35738396-35738254 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 19, 25

Conread position: 1-152
Cow position: chr29:29769481-29769330 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 86, 18

Conread position: 1-152
Cow position: chr29:34744747-34744599 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 98, 55

Conread position: 1-153
Cow position: chr29:4334597-4334748 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 86, 65

Conread position: 1-154
Cow position: chr29:94684-94534 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 99, 47

Conread position: 1-154
Cow position: chr29:16309612-16309766 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 95, 18

Conread position: 1-154
Cow position: chr29:36183151-36183304 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 99, 18

Conread position: 1-155
Cow position: chr29:11433992-11434143 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 108, 57

Conread position: 1-155
Cow position: chr29:35291960-35292116 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 99, 18

Conread position: 1-156
Cow position: chr29:1395466-1395622 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 106, 20

Conread position: 1-156
Cow position: chr29:2522442-2522590 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 124
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 20, 0

Conread position: 1-156
Cow position: chr29:2532935-2533084 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 116
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 98, 18

Conread position: 1-156
Cow position: chr29:4085189-4085338 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 122
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 19, 48

Conread position: 1-156
Cow position: chr29:4520205-4520365 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 98, 18

Conread position: 1-156
Cow position: chr29:6293606-6293453 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 126
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 11, 99

Conread position: 1-156
Cow position: chr29:6925882-6926034 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 18, 0

Conread position: 1-156
Cow position: chr29:8669236-8669391 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 118
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 99, 47

Conread position: 1-156
Cow position: chr29:9139279-9139447 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 16, 0

Conread position: 1-156
Cow position: chr29:10018444-10018604 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 121
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 17, 46

Conread position: 1-156
Cow position: chr29:11053990-11053834 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 98, 0

Conread position: 1-156
Cow position: chr29:11398053-11397901 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 117
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 17, 0

Conread position: 1-156
Cow position: chr29:11915690-11915852 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 123
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 105, 23

Conread position: 1-156
Cow position: chr29:12784087-12783935 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 121
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 98, 0

Conread position: 1-156
Cow position: chr29:18212122-18211969 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 118
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 102, 56

Conread position: 1-156
Cow position: chr29:22778308-22778150 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 119
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 104, 0

Conread position: 1-156
Cow position: chr29:23697845-23698002 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 122
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 14, 75

Conread position: 1-156
Cow position: chr29:24952558-24952713 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 116
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 108, 18

Conread position: 1-156
Cow position: chr29:28166343-28166193 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 116
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 1-156
Cow position: chr29:28868506-28868664 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 121
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 91, 18

Conread position: 1-156
Cow position: chr29:31926420-31926264 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 101, 0

Conread position: 1-156
Cow position: chr29:31928851-31929014 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 68, 20

Conread position: 1-156
Cow position: chr29:36216987-36217140 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 104, 19

Conread position: 1-156
Cow position: chr29:37599338-37599187 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 115
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 1-156
Cow position: chr29:39643045-39643201 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 126
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 10, 62

Conread position: 1-156
Cow position: chr29:41364980-41365136 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 18, 0

Conread position: 1-156
Cow position: chr29:44008912-44008755 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 115
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 108, 121

Conread position: 1-157
Cow position: chr29:9638448-9638294 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 100, 0

Conread position: 1-179
Cow position: chr29:17301399-17301581 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 96, 18

Conread position: 2-154
Cow position: chr29:27858663-27858818 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 61

Conread position: 2-155
Cow position: chr29:2071703-2071548 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 119
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 99, 0

Conread position: 2-155
Cow position: chr29:6286288-6286137 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 88, 0

Conread position: 2-156
Cow position: chr29:6217678-6217529 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 98, 0

Conread position: 2-156
Cow position: chr29:19428529-19428684 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 123
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 96, 0

Conread position: 2-156
Cow position: chr29:43956764-43956915 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 115
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 3-130
Cow position: chr29:37292650-37292778 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 99
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 84, 0

Conread position: 3-153
Cow position: chr29:12025599-12025445 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 96, 0

Conread position: 3-156
Cow position: chr29:6337532-6337688 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 119
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 96, 0

Conread position: 3-156
Cow position: chr29:29558556-29558408 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 3-156
Cow position: chr29:40299140-40298995 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 122
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 16, 32

Conread position: 4-155
Cow position: chr29:34745788-34745634 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 120
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 83, 15

Conread position: 7-147
Cow position: chr29:26206743-26206880 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 108
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 90, 0

Conread position: 7-152
Cow position: chr29:44378543-44378393 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 7-154
Cow position: chr29:29057057-29057202 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 117
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 43

Conread position: 7-154
Cow position: chr29:30440806-30440957 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 113
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 92, 0

Conread position: 8-153
Cow position: chr29:22936145-22936294 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 8-156
Cow position: chr29:40995013-40994865 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 91, 13

Conread position: 9-153
Cow position: chr29:26017625-26017480 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 116
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 78, 69

Conread position: 9-156
Cow position: chr29:32799831-32799686 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 93, 125

Conread position: 10-149
Cow position: chr29:30227395-30227257 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 106
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 43, 37

Conread position: 10-156
Cow position: chr29:14484666-14484512 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 88, 0

Conread position: 12-155
Cow position: chr29:868655-868799 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 112
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 83, 0

Conread position: 12-155
Cow position: chr29:2984768-2984915 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 87, 0

Conread position: 12-155
Cow position: chr29:17297014-17297160 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 98, 79

Conread position: 12-155
Cow position: chr29:23389676-23389529 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 110
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 75, 0

Conread position: 12-156
Cow position: chr29:3539031-3538881 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 112
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 12-156
Cow position: chr29:3685631-3685494 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 12-156
Cow position: chr29:6844748-6844608 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 65, 0

Conread position: 12-156
Cow position: chr29:12004877-12004737 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 120
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 27, 0

Conread position: 12-156
Cow position: chr29:13028318-13028469 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 115
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 88, 23

Conread position: 12-156
Cow position: chr29:22068866-22068715 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 116
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 90, 0

Conread position: 12-156
Cow position: chr29:25474800-25474948 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 78

Conread position: 12-156
Cow position: chr29:28775577-28775434 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 112
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 87, 56

Conread position: 12-156
Cow position: chr29:41530727-41530875 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 80, 0

Conread position: 12-157
Cow position: chr29:12626099-12625950 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 115
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 86, 0

Conread position: 12-163
Cow position: chr29:42886267-42886423 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 78, 0

Conread position: 13-155
Cow position: chr29:707066-706925 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 111
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 75, 24

Conread position: 13-156
Cow position: chr29:11489841-11489696 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 86, 131

Conread position: 13-156
Cow position: chr29:13372546-13372689 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 92, 74

Conread position: 13-156
Cow position: chr29:13639489-13639342 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 87, 66

Conread position: 13-156
Cow position: chr29:19821168-19821309 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 97, 0

Conread position: 13-156
Cow position: chr29:22175568-22175706 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 77, 0

Conread position: 13-156
Cow position: chr29:24252119-24252263 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 114
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 69, 47

Conread position: 14-97
Cow position: chr29:19338869-19338952 (view UCSC Genome Browser custom track)
Alignm length: 84
Alignm identity: 74
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 14-154
Cow position: chr29:10653227-10653364 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 93, 35

Conread position: 14-156
Cow position: chr29:17222294-17222438 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 9, 0

Conread position: 14-156
Cow position: chr29:17409217-17409360 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 106
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 76, 0

Conread position: 14-156
Cow position: chr29:39567569-39567711 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 113
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 90, 76

Conread position: 14-179
Cow position: chr29:38580859-38581026 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 94, 156

Conread position: 15-142
Cow position: chr29:26734912-26735040 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 102
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 91, 63

Conread position: 16-156
Cow position: chr29:11705007-11705144 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 115
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 62, 0

Conread position: 17-156
Cow position: chr29:40583678-40583818 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 86, 0

Show alignments to all cow chromosomes.