Cow genome map

Conread name: Ss1.1-Utr1-UTR01A080100.5

Conread position: 244-445
Cow position: chr12:1775274-1775075 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 147
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 85, 18

Conread position: 245-440
Cow position: chr12:8675417-8675228 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 141
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 7, 0

Conread position: 246-440
Cow position: chr12:22565685-22565876 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 16, 0

Conread position: 249-434
Cow position: chr12:1437574-1437758 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 139
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 10, 0

Conread position: 249-440
Cow position: chr12:8628553-8628360 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 141
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 26, 16

Conread position: 249-440
Cow position: chr12:18585322-18585512 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 140
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 58, 10

Conread position: 252-417
Cow position: chr12:22867835-22868000 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 120
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 28, 9

Conread position: 252-437
Cow position: chr12:8137320-8137136 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 10, 0

Conread position: 252-440
Cow position: chr12:8843291-8843104 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 75, 0

Conread position: 252-440
Cow position: chr12:13259071-13259256 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 133
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 252-440
Cow position: chr12:20846787-20846974 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 139
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 7, 0

Conread position: 252-440
Cow position: chr12:29499548-29499361 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 129
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 252-440
Cow position: chr12:33122028-33122214 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 144
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 10, 0

Conread position: 252-445
Cow position: chr12:21091123-21090931 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 139, 0

Conread position: 252-447
Cow position: chr12:30686390-30686583 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 147
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 10, 0

Conread position: 253-430
Cow position: chr12:23377818-23377994 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 125
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 261-440
Cow position: chr12:31028159-31027981 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 15, 0

Conread position: 261-440
Cow position: chr12:32284557-32284736 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-409
Cow position: chr12:21251921-21251774 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 262-416
Cow position: chr12:31330248-31330094 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 262-433
Cow position: chr12:43053838-43053668 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 50, 43

Conread position: 262-438
Cow position: chr12:11100906-11101082 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 38

Conread position: 262-438
Cow position: chr12:21904030-21904204 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 131
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 156, 0

Conread position: 262-438
Cow position: chr12:27930134-27929958 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-439
Cow position: chr12:1886694-1886517 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-439
Cow position: chr12:16802384-16802207 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-439
Cow position: chr12:24980379-24980556 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 133
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:62550-62372 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:1057112-1057289 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 67, 0

Conread position: 262-440
Cow position: chr12:1407491-1407670 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 85, 0

Conread position: 262-440
Cow position: chr12:1469467-1469289 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:1512106-1511928 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:3717612-3717435 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr12:5712627-5712805 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 131
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 41, 123

Conread position: 262-440
Cow position: chr12:6106690-6106512 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:10358356-10358534 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:12755497-12755319 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr12:14569157-14568979 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:17717959-17718137 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:21058036-21057859 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 136, 24

Conread position: 262-440
Cow position: chr12:21430621-21430799 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:22518254-22518076 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:22571501-22571679 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:22593416-22593592 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 150, 0

Conread position: 262-440
Cow position: chr12:23138668-23138490 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:23160240-23160062 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:24993309-24993131 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:25097606-25097428 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr12:25260855-25260677 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 132
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 148, 44

Conread position: 262-440
Cow position: chr12:25266675-25266497 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:27853288-27853110 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr12:27993758-27993936 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr12:28764344-28764163 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 135
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 47, 38

Conread position: 262-440
Cow position: chr12:31424137-31423959 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:32012097-32011917 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 130, 0

Conread position: 262-440
Cow position: chr12:32656213-32656391 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:34176022-34176200 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:34964640-34964462 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:35548468-35548291 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 150, 0

Conread position: 262-440
Cow position: chr12:36212914-36213092 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:36406010-36405832 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:38893020-38893198 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:41338569-41338392 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 147, 0

Conread position: 262-440
Cow position: chr12:42231967-42232145 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 46, 38

Conread position: 262-440
Cow position: chr12:42605518-42605340 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 138
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr12:42856869-42856693 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 45, 10

Conread position: 262-440
Cow position: chr12:45144714-45144892 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-445
Cow position: chr12:15940462-15940284 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 135
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 120, 151

Conread position: 262-446
Cow position: chr12:19861355-19861541 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 134
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 64, 50

Conread position: 262-446
Cow position: chr12:27479436-27479621 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 139
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 17, 128

Conread position: 262-447
Cow position: chr12:758078-758265 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 90, 29

Conread position: 262-448
Cow position: chr12:22203010-22202823 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 45, 38

Conread position: 262-461
Cow position: chr12:21484058-21484265 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 142
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 145, 0

Conread position: 263-440
Cow position: chr12:3363601-3363778 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 264-420
Cow position: chr12:8142985-8142830 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 0

Conread position: 264-422
Cow position: chr12:6078451-6078293 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 264-439
Cow position: chr12:37561668-37561843 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 131
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 264-440
Cow position: chr12:22747874-22748050 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 268-440
Cow position: chr12:18467454-18467619 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 126
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 0

Conread position: 268-440
Cow position: chr12:23100371-23100200 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 129
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 12, 0

Conread position: 268-442
Cow position: chr12:20995093-20994920 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 151, 0

Conread position: 268-452
Cow position: chr12:24030065-24029879 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 137
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 39, 23

Conread position: 273-440
Cow position: chr12:3094955-3094787 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 119
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 101, 0

Conread position: 273-440
Cow position: chr12:15539467-15539634 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 273-440
Cow position: chr12:21309384-21309217 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 61, 41

Conread position: 273-440
Cow position: chr12:39929837-39930004 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 126
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 276-440
Cow position: chr12:19660290-19660124 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 131, 0

Conread position: 278-440
Cow position: chr12:21610266-21610427 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 123
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 129, 0

Conread position: 279-440
Cow position: chr12:21719498-21719336 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 118
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 16, 0

Conread position: 281-410
Cow position: chr12:21201469-21201598 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 98
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr12:27958844-27958690 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 305-440
Cow position: chr12:4200318-4200453 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 305-440
Cow position: chr12:41594734-41594869 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 100
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 306-440
Cow position: chr12:22480295-22480160 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 103
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 84, 0

Conread position: 306-440
Cow position: chr12:27506947-27506813 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 306-440
Cow position: chr12:46163441-46163575 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 308-440
Cow position: chr12:5328205-5328073 (view UCSC Genome Browser custom track)
Alignm length: 133
Alignm identity: 102
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 323-440
Cow position: chr12:20460000-20459883 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 91
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 333-440
Cow position: chr12:465907-465800 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 333-440
Cow position: chr12:35312162-35312055 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 87
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.