Cow genome map

Conread name: Ss1.1-Utr1-UTR01A080100.5

Conread position: 215-440
Cow position: chr20:29368729-29368495 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 27, 0

Conread position: 216-440
Cow position: chr20:6476199-6476423 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 63, 46

Conread position: 222-438
Cow position: chr20:37169552-37169323 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 162
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 39, 0

Conread position: 223-440
Cow position: chr20:13576038-13575811 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 171
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 39, 90

Conread position: 223-440
Cow position: chr20:30461379-30461156 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 151
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 39, 78

Conread position: 224-452
Cow position: chr20:29313500-29313724 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 44, 37

Conread position: 227-440
Cow position: chr20:5270486-5270264 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 35, 0

Conread position: 227-440
Cow position: chr20:19244146-19244369 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 168
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 35, 0

Conread position: 227-440
Cow position: chr20:34459628-34459407 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 158
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 35, 0

Conread position: 230-440
Cow position: chr20:10867106-10866891 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 154
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 32, 75

Conread position: 230-440
Cow position: chr20:16944218-16944422 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 52, 0

Conread position: 249-391
Cow position: chr20:9996316-9996457 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 13, 0

Conread position: 249-439
Cow position: chr20:20730979-20731169 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 139
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 168, 10

Conread position: 249-440
Cow position: chr20:9338739-9338927 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 136
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 14, 147

Conread position: 249-440
Cow position: chr20:28294034-28294217 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 10, 0

Conread position: 249-453
Cow position: chr20:35131725-35131929 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 153
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 59, 15

Conread position: 252-410
Cow position: chr20:36053358-36053201 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 116
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 78, 10

Conread position: 252-418
Cow position: chr20:14721650-14721484 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 120
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 24, 10

Conread position: 252-432
Cow position: chr20:28035136-28034957 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 5, 0

Conread position: 252-438
Cow position: chr20:20352624-20352439 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 144
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 10, 0

Conread position: 252-440
Cow position: chr20:12685864-12685672 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 141
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 126, 10

Conread position: 252-440
Cow position: chr20:31566174-31565992 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 138
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 10, 0

Conread position: 252-441
Cow position: chr20:2653847-2654036 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 158, 10

Conread position: 252-447
Cow position: chr20:19343261-19343453 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 187, 10

Conread position: 258-440
Cow position: chr20:18093176-18092994 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 140
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 261-446
Cow position: chr20:36418992-36418805 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 53, 24

Conread position: 262-409
Cow position: chr20:5537656-5537801 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 45, 38

Conread position: 262-415
Cow position: chr20:33181958-33181807 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 116
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 0

Conread position: 262-416
Cow position: chr20:30578615-30578769 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 113
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 262-423
Cow position: chr20:5793605-5793765 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 119
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 262-434
Cow position: chr20:28163772-28163942 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 38

Conread position: 262-437
Cow position: chr20:21397248-21397423 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 129, 83

Conread position: 262-438
Cow position: chr20:16106173-16106349 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 262-438
Cow position: chr20:22061450-22061274 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-439
Cow position: chr20:12047239-12047415 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 49

Conread position: 262-439
Cow position: chr20:20440224-20440047 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-439
Cow position: chr20:30385519-30385342 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 135
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:825507-825685 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:3809042-3808864 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:6136262-6136084 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:7811106-7810929 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 39, 0

Conread position: 262-440
Cow position: chr20:8971164-8970986 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:10922194-10922016 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr20:12332412-12332593 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 65, 0

Conread position: 262-440
Cow position: chr20:12435669-12435490 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 142
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 68, 0

Conread position: 262-440
Cow position: chr20:12568584-12568405 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 0

Conread position: 262-440
Cow position: chr20:13506831-13506653 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:13765624-13765798 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 38, 0

Conread position: 262-440
Cow position: chr20:14757529-14757351 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 155, 76

Conread position: 262-440
Cow position: chr20:14925915-14925737 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:15090648-15090470 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:15093846-15093668 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:16515086-16515262 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 102, 0

Conread position: 262-440
Cow position: chr20:16559814-16559636 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:17658503-17658327 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 29

Conread position: 262-440
Cow position: chr20:18355958-18356136 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:19440642-19440820 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:21719294-21719463 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 124, 0

Conread position: 262-440
Cow position: chr20:22208340-22208527 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 0

Conread position: 262-440
Cow position: chr20:23466922-23466745 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr20:23805150-23804972 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:24542153-24542331 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:24568542-24568364 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:27876209-27876387 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr20:28444620-28444443 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 24, 0

Conread position: 262-440
Cow position: chr20:28561157-28560979 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr20:28724484-28724662 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr20:30430998-30431177 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 154, 0

Conread position: 262-440
Cow position: chr20:32085727-32085553 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 49, 0

Conread position: 262-440
Cow position: chr20:34967718-34967888 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 128
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr20:35108460-35108282 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:35127398-35127576 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:35159853-35159675 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:38956865-38957043 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr20:39233959-39234136 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 262-440
Cow position: chr20:42085260-42085438 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-441
Cow position: chr20:10493934-10494109 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 125
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 51, 0

Conread position: 262-441
Cow position: chr20:30326281-30326457 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 98, 20

Conread position: 262-445
Cow position: chr20:7598130-7597947 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 134
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-447
Cow position: chr20:35019647-35019832 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 153, 22

Conread position: 262-452
Cow position: chr20:9587493-9587684 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 147
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 147, 95

Conread position: 262-452
Cow position: chr20:20939306-20939122 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 143
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 177, 150

Conread position: 263-438
Cow position: chr20:31080100-31080278 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 69, 0

Conread position: 264-440
Cow position: chr20:14867653-14867478 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 51, 0

Conread position: 264-440
Cow position: chr20:19844514-19844684 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 133
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 146, 0

Conread position: 267-446
Cow position: chr20:870277-870104 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 27, 0

Conread position: 269-440
Cow position: chr20:25845890-25845718 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 122, 0

Conread position: 274-440
Cow position: chr20:31785633-31785468 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 125
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 72, 0

Conread position: 276-429
Cow position: chr20:22210593-22210744 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 121
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 46, 0

Conread position: 278-440
Cow position: chr20:33598221-33598059 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 279-440
Cow position: chr20:7513183-7513026 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 130, 0

Conread position: 305-436
Cow position: chr20:12693811-12693942 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 107
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 305-440
Cow position: chr20:16159900-16159765 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 102
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 306-440
Cow position: chr20:24829073-24829207 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 103
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 308-440
Cow position: chr20:23801676-23801809 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 105
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 102, 0

Conread position: 310-440
Cow position: chr20:19306610-19306480 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 315-440
Cow position: chr20:8098567-8098693 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 96
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 19, 0

Conread position: 315-440
Cow position: chr20:15294818-15294943 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 338-440
Cow position: chr20:753241-753343 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 84
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.