Cow genome map

Conread name: Ss1.1-Utr1-UTR01A080100.5

Conread position: 221-452
Cow position: chr23:7043203-7042972 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 168
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 39, 101

Conread position: 222-438
Cow position: chr23:1338863-1338639 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 166
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 40, 133

Conread position: 223-439
Cow position: chr23:16612190-16611968 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 172
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 37, 112

Conread position: 227-440
Cow position: chr23:22144688-22144476 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 82, 35

Conread position: 239-440
Cow position: chr23:16056366-16056556 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 154
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 78

Conread position: 243-445
Cow position: chr23:8099894-8100089 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 168, 19

Conread position: 244-446
Cow position: chr23:7492708-7492506 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 140
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 51, 32

Conread position: 249-404
Cow position: chr23:40372581-40372427 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 249-411
Cow position: chr23:6222499-6222660 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 13, 0

Conread position: 249-433
Cow position: chr23:30238911-30239094 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 13, 0

Conread position: 249-440
Cow position: chr23:1021282-1021091 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 159, 13

Conread position: 249-440
Cow position: chr23:11713022-11712832 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 146
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 10, 0

Conread position: 251-440
Cow position: chr23:10417836-10417657 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 149
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 11, 0

Conread position: 252-438
Cow position: chr23:31892697-31892876 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 10, 0

Conread position: 252-440
Cow position: chr23:616609-616425 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 10

Conread position: 252-440
Cow position: chr23:40888093-40888277 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 140
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 10, 0

Conread position: 252-446
Cow position: chr23:26307689-26307878 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 138
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 15, 0

Conread position: 252-447
Cow position: chr23:4516190-4516384 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 77, 10

Conread position: 252-452
Cow position: chr23:1800287-1800484 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 150
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 187, 12

Conread position: 253-430
Cow position: chr23:23284149-23284323 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 138
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 9, 0

Conread position: 257-438
Cow position: chr23:5410918-5411101 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 137
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 13, 93

Conread position: 259-440
Cow position: chr23:15504647-15504826 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 142
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 147, 0

Conread position: 261-410
Cow position: chr23:10904362-10904511 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 109
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 8, 138

Conread position: 262-400
Cow position: chr23:10554943-10554806 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 108
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 68, 35

Conread position: 262-410
Cow position: chr23:34256296-34256148 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 120
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-434
Cow position: chr23:2579252-2579424 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 262-437
Cow position: chr23:1326743-1326566 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 134
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 154, 0

Conread position: 262-438
Cow position: chr23:10422206-10422031 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 126
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 262-438
Cow position: chr23:14265010-14265183 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 132
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 22, 0

Conread position: 262-439
Cow position: chr23:1958790-1958964 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 45, 38

Conread position: 262-439
Cow position: chr23:2024424-2024250 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 137
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 43, 0

Conread position: 262-439
Cow position: chr23:28221364-28221540 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 163, 0

Conread position: 262-440
Cow position: chr23:609386-609564 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:943638-943816 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:1011170-1010991 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 137
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 70, 74

Conread position: 262-440
Cow position: chr23:1049216-1049038 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 130
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 49, 38

Conread position: 262-440
Cow position: chr23:1248870-1248692 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:2321284-2321106 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:2368481-2368659 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:2410714-2410536 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 127
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:2760560-2760737 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr23:3285416-3285594 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:3417671-3417493 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:3709062-3709240 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:4080802-4080980 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:4265958-4265780 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:4637663-4637487 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr23:4891352-4891531 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 132
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 46, 0

Conread position: 262-440
Cow position: chr23:5396923-5396745 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:5624918-5624737 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr23:8705521-8705699 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:10937664-10937486 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:11028064-11028242 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:11343160-11343332 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 129
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 38, 0

Conread position: 262-440
Cow position: chr23:11781448-11781620 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 262-440
Cow position: chr23:14960290-14960113 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 140
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr23:15528242-15528422 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 140
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 29, 42

Conread position: 262-440
Cow position: chr23:17877213-17877042 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 62, 0

Conread position: 262-440
Cow position: chr23:19317145-19317323 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:19492217-19492394 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr23:19621185-19621005 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 134
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 126, 0

Conread position: 262-440
Cow position: chr23:20153562-20153384 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 139
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 46, 38

Conread position: 262-440
Cow position: chr23:21008947-21008769 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:21773249-21773071 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 137
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:22169548-22169726 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 132
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:22989219-22989042 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 0

Conread position: 262-440
Cow position: chr23:24119214-24119390 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 82, 0

Conread position: 262-440
Cow position: chr23:25351017-25351195 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 136
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:26839626-26839799 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 128
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 262-440
Cow position: chr23:27401798-27401971 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 45, 15

Conread position: 262-440
Cow position: chr23:28084436-28084258 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:31647413-31647243 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 52, 0

Conread position: 262-440
Cow position: chr23:35928579-35928756 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 136
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 157, 26

Conread position: 262-440
Cow position: chr23:36097480-36097658 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:37199858-37199679 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 136
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 38

Conread position: 262-440
Cow position: chr23:39744549-39744727 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 135
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 262-440
Cow position: chr23:41143098-41143276 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 133
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 0, 0

Conread position: 262-445
Cow position: chr23:15179725-15179912 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 135
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 46, 38

Conread position: 262-447
Cow position: chr23:5871903-5871717 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 146
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 148, 165

Conread position: 263-440
Cow position: chr23:2720114-2720291 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 44, 37

Conread position: 263-440
Cow position: chr23:14971286-14971114 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 129
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 143, 0

Conread position: 264-432
Cow position: chr23:7370513-7370677 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 133, 46

Conread position: 264-434
Cow position: chr23:38583604-38583768 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 126
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 25, 52

Conread position: 264-442
Cow position: chr23:9560777-9560599 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 122
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 264-447
Cow position: chr23:15216174-15215990 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 138
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 111, 149

Conread position: 264-447
Cow position: chr23:36028718-36028535 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 12, 31

Conread position: 265-440
Cow position: chr23:11815187-11815014 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 134
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 147, 0

Conread position: 266-429
Cow position: chr23:28361744-28361904 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 68, 62

Conread position: 267-440
Cow position: chr23:3844375-3844202 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 128
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 267-452
Cow position: chr23:2792102-2791916 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 138
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 150, 161

Conread position: 268-425
Cow position: chr23:15039639-15039482 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 268-440
Cow position: chr23:29442432-29442260 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 274-429
Cow position: chr23:27976873-27976720 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 61, 54

Conread position: 274-445
Cow position: chr23:16496601-16496430 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 134
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 278-440
Cow position: chr23:4533030-4532868 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 121
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 286-440
Cow position: chr23:29448600-29448446 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 117
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 286-441
Cow position: chr23:1552640-1552484 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 0

Conread position: 308-439
Cow position: chr23:25593729-25593862 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 104
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 34, 114

Conread position: 310-454
Cow position: chr23:644032-643888 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 128, 106

Conread position: 315-440
Cow position: chr23:41096031-41095906 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 97
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 324-440
Cow position: chr23:30634875-30634759 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 333-440
Cow position: chr23:17845737-17845843 (view UCSC Genome Browser custom track)
Alignm length: 108
Alignm identity: 88
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 34, 0

Conread position: 337-440
Cow position: chr23:31703627-31703730 (view UCSC Genome Browser custom track)
Alignm length: 104
Alignm identity: 88
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 338-437
Cow position: chr23:2437446-2437347 (view UCSC Genome Browser custom track)
Alignm length: 100
Alignm identity: 82
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 338-440
Cow position: chr23:3301589-3301691 (view UCSC Genome Browser custom track)
Alignm length: 103
Alignm identity: 86
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.