Cow genome map
| Conread name: | Ss1.1-Utr2-C0001798_K16.5.5 |
| Conread position: | 1-76 |
| Cow position: | chr29:31116069-31115994 (view UCSC Genome Browser custom track) |
| Alignm length: | 76 |
| Alignm identity: | 71 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-78 |
| Cow position: | chr29:31174514-31174437 (view UCSC Genome Browser custom track) |
| Alignm length: | 78 |
| Alignm identity: | 71 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 234-406 |
| Cow position: | chr29:27895394-27895566 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 139, 158 |
| Conread position: | 234-406 |
| Cow position: | chr29:27936005-27935833 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 139, 158 |
| Conread position: | 237-345 |
| Cow position: | chr29:31206485-31206377 (view UCSC Genome Browser custom track) |
| Alignm length: | 109 |
| Alignm identity: | 91 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-350 |
| Cow position: | chr29:28071653-28071540 (view UCSC Genome Browser custom track) |
| Alignm length: | 114 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 237-359 |
| Cow position: | chr29:30823707-30823829 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 95 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 238-406 |
| Cow position: | chr29:31113700-31113532 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 119 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 143, 154 |
| Conread position: | 504-678 |
| Cow position: | chr29:30738120-30738294 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 59, 52 |
| Conread position: | 504-680 |
| Cow position: | chr29:30703043-30703219 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 124 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 58, 50 |
| Conread position: | 652-798 |
| Cow position: | chr29:31169314-31169170 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1047-1361 |
| Cow position: | chr29:30681939-30682239 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 218 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 40, 47 |
| Conread position: | 1051-1354 |
| Cow position: | chr29:31200020-31199724 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 23, 30 |
| Conread position: | 1052-1318 |
| Cow position: | chr29:28048876-28048617 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 175, 0 |
| Conread position: | 1053-1339 |
| Cow position: | chr29:28066266-28065988 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 207 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 1053-1356 |
| Cow position: | chr29:27929548-27929256 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 217 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1053-1356 |
| Cow position: | chr29:27962188-27962479 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 1053-1356 |
| Cow position: | chr29:27997470-27997761 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1053-1356 |
| Cow position: | chr29:31079939-31079645 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 280, 40 |
| Conread position: | 1053-1356 |
| Cow position: | chr29:31135308-31135016 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 47, 174 |
| Conread position: | 1101-1361 |
| Cow position: | chr29:30744200-30744450 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 1102-1356 |
| Cow position: | chr29:30708903-30709143 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 1102-1356 |
| Cow position: | chr29:31107200-31106954 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 124, 0 |
Show alignments to all cow chromosomes.