Cow genome map

Conread name: Ss1.1-Utr2-C0001815_L04.5

Conread position: 200-576
Cow position: chr12:22203461-22203072 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 236
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 178, 135

Conread position: 226-566
Cow position: chr12:35548883-35548542 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 111, 11

Conread position: 231-480
Cow position: chr12:21224208-21223961 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 172
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 46, 18

Conread position: 231-538
Cow position: chr12:20460969-20460663 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 166, 18

Conread position: 231-563
Cow position: chr12:25261260-25260928 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 18

Conread position: 231-566
Cow position: chr12:25267084-25266747 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 18

Conread position: 232-411
Cow position: chr12:8844246-8844067 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 158, 17

Conread position: 232-411
Cow position: chr12:15775658-15775837 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 158, 17

Conread position: 232-422
Cow position: chr12:31332071-31331882 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 141
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 158, 17

Conread position: 232-444
Cow position: chr12:15949556-15949339 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 151
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 0

Conread position: 232-454
Cow position: chr12:14213917-14213693 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 165
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 158, 17

Conread position: 232-475
Cow position: chr12:27930500-27930258 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 158, 17

Conread position: 232-500
Cow position: chr12:24030691-24030420 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 198
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 158, 17

Conread position: 232-552
Cow position: chr12:30685998-30686317 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-561
Cow position: chr12:6549162-6549480 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 124, 17

Conread position: 232-563
Cow position: chr12:12755905-12755572 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-563
Cow position: chr12:21200999-21201331 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 17

Conread position: 232-563
Cow position: chr12:22571102-22571430 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-566
Cow position: chr12:3363196-3363531 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-566
Cow position: chr12:23160634-23160312 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 232-566
Cow position: chr12:24993717-24993381 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-566
Cow position: chr12:33926269-33925933 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-575
Cow position: chr12:1404523-1404867 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 232-575
Cow position: chr12:20882374-20882696 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 228
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 175, 17

Conread position: 232-575
Cow position: chr12:21252327-21251984 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 237
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 97, 17

Conread position: 232-575
Cow position: chr12:23139065-23138725 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 17

Conread position: 232-575
Cow position: chr12:24979938-24980280 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 232-575
Cow position: chr12:32655809-32656150 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 232-575
Cow position: chr12:35633250-35632921 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 236
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 77, 16

Conread position: 232-575
Cow position: chr12:36212506-36212852 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 17

Conread position: 232-575
Cow position: chr12:42605922-42605581 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr12:251585-251243 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 232-576
Cow position: chr12:3179626-3179968 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 232-576
Cow position: chr12:8675821-8675473 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-576
Cow position: chr12:27853705-27853351 (view UCSC Genome Browser custom track)
Alignm length: 356
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 104, 17

Conread position: 232-576
Cow position: chr12:28835071-28834724 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 19

Conread position: 232-576
Cow position: chr12:41594288-41594644 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 240
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 90, 18

Conread position: 233-560
Cow position: chr12:28764775-28764450 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 16

Conread position: 233-564
Cow position: chr12:8137699-8137384 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 233
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 16, 0

Conread position: 235-478
Cow position: chr12:6442969-6442726 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 175
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 157, 14

Conread position: 235-529
Cow position: chr12:29445986-29446273 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 192
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 273, 8

Conread position: 235-562
Cow position: chr12:3718017-3717688 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 235-562
Cow position: chr12:24432632-24432310 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 37, 14

Conread position: 235-563
Cow position: chr12:1775667-1775332 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 226
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 106, 15

Conread position: 235-564
Cow position: chr12:21129296-21129622 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 232
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 158, 14

Conread position: 235-566
Cow position: chr12:34175611-34175943 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 235-566
Cow position: chr12:37561265-37561594 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 235-575
Cow position: chr12:22747472-22747809 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 235-576
Cow position: chr12:2284266-2284599 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 233
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 158, 14

Conread position: 235-576
Cow position: chr12:25097975-25097668 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 232
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 0

Conread position: 236-481
Cow position: chr12:19872543-19872785 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 154, 13

Conread position: 236-551
Cow position: chr12:4784427-4784120 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 210
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 85, 14

Conread position: 236-563
Cow position: chr12:18467049-18467376 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 13

Conread position: 236-566
Cow position: chr12:21430217-21430549 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 13

Conread position: 236-575
Cow position: chr12:1887086-1886757 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 13

Conread position: 236-576
Cow position: chr12:11100505-11100844 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 13

Conread position: 246-553
Cow position: chr12:22565333-22565641 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 144, 195

Conread position: 246-563
Cow position: chr12:6480117-6479813 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 227
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 144, 63

Conread position: 247-553
Cow position: chr12:12294797-12295113 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 94, 108

Conread position: 247-566
Cow position: chr12:17717565-17717887 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 0

Conread position: 247-575
Cow position: chr12:1407100-1407431 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 138, 0

Conread position: 247-575
Cow position: chr12:30677902-30678219 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 17, 12

Conread position: 247-576
Cow position: chr12:42857259-42856931 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 149, 100

Conread position: 248-575
Cow position: chr12:21210940-21211270 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 88

Conread position: 248-576
Cow position: chr12:22593014-22593354 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 232
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 71, 0

Conread position: 250-534
Cow position: chr12:19728155-19727878 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 68

Conread position: 250-576
Cow position: chr12:33121667-33121977 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 224
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 168, 37

Conread position: 253-576
Cow position: chr12:18584948-18585272 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 51

Conread position: 255-551
Cow position: chr12:36573768-36573477 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 203
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 136, 232

Conread position: 256-564
Cow position: chr12:21091459-21091154 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 175
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 129, 83

Conread position: 256-575
Cow position: chr12:8890768-8890450 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 216
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 134, 275

Conread position: 257-561
Cow position: chr12:30140713-30141005 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 222
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 133, 106

Conread position: 263-566
Cow position: chr12:38892642-38892948 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 0

Conread position: 271-523
Cow position: chr12:35300610-35300356 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 173
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 84, 51

Conread position: 275-576
Cow position: chr12:21483697-21483996 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 201
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 183

Conread position: 279-434
Cow position: chr12:7868452-7868609 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 117
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 111, 82

Conread position: 281-576
Cow position: chr12:21944421-21944715 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 195
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 116, 29

Conread position: 282-575
Cow position: chr12:12929584-12929288 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 174
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 114, 276

Conread position: 286-541
Cow position: chr12:14854890-14854625 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 178
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 66, 48

Conread position: 305-554
Cow position: chr12:35262877-35263116 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 179
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 19, 0

Conread position: 306-566
Cow position: chr12:1056771-1057041 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 154
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 7, 0

Conread position: 313-563
Cow position: chr12:4933513-4933760 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 177
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 63, 150

Conread position: 335-564
Cow position: chr12:41464421-41464198 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 159
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 79, 51

Conread position: 341-564
Cow position: chr12:17968149-17968372 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 158
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 35

Conread position: 344-575
Cow position: chr12:8343659-8343428 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 161
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 52, 34

Conread position: 349-552
Cow position: chr12:26821963-26822162 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 142
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 42, 96

Conread position: 355-566
Cow position: chr12:34964926-34964712 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 149
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 0

Conread position: 358-575
Cow position: chr12:6078728-6078513 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 35, 132

Conread position: 371-576
Cow position: chr12:20846529-20846734 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 140
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 21, 47

Conread position: 380-573
Cow position: chr12:18201733-18201924 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 133
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 30, 122

Conread position: 389-558
Cow position: chr12:20995350-20995179 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 16, 0

Conread position: 408-566
Cow position: chr12:22518629-22518471 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 409-575
Cow position: chr12:41239601-41239436 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 123
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 142, 36

Conread position: 419-575
Cow position: chr12:27355273-27355116 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 113
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 54, 0

Conread position: 425-566
Cow position: chr12:536821-536962 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 103
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.