Cow genome map

Conread name: Ss1.1-Utr2-C0001815_L04.5

Conread position: 231-576
Cow position: chr19:24673135-24672793 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 250
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 84, 18

Conread position: 232-385
Cow position: chr19:29086020-29086173 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 108, 18

Conread position: 232-391
Cow position: chr19:5899147-5898992 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 118
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 17, 0

Conread position: 232-423
Cow position: chr19:2271757-2271567 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 136
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 158, 17

Conread position: 232-450
Cow position: chr19:774979-775199 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 157, 17

Conread position: 232-526
Cow position: chr19:33649829-33649531 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 32, 18

Conread position: 232-541
Cow position: chr19:47098479-47098800 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 227
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 83, 18

Conread position: 232-560
Cow position: chr19:3088962-3088634 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-563
Cow position: chr19:33943929-33944256 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-563
Cow position: chr19:40885386-40885055 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 230
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 165, 17

Conread position: 232-564
Cow position: chr19:30560533-30560857 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 17

Conread position: 232-564
Cow position: chr19:44758430-44758105 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 235
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 158, 17

Conread position: 232-565
Cow position: chr19:13063790-13064118 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 214
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 17

Conread position: 232-566
Cow position: chr19:15445502-15445171 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-566
Cow position: chr19:16318251-16317916 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr19:20610690-20611026 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 118, 17

Conread position: 232-566
Cow position: chr19:43147032-43147368 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 232-570
Cow position: chr19:35382790-35382453 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 232-575
Cow position: chr19:7344392-7344734 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-575
Cow position: chr19:7481579-7481234 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 17

Conread position: 232-575
Cow position: chr19:20107083-20107444 (view UCSC Genome Browser custom track)
Alignm length: 363
Alignm identity: 253
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 72, 18

Conread position: 232-575
Cow position: chr19:22511415-22511077 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 159, 17

Conread position: 232-575
Cow position: chr19:28404210-28403867 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 220
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 159, 17

Conread position: 232-575
Cow position: chr19:52149176-52148847 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr19:206863-207208 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr19:257672-258014 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 146, 17

Conread position: 232-576
Cow position: chr19:748901-748565 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 236
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 160, 17

Conread position: 232-576
Cow position: chr19:1584824-1585171 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 17

Conread position: 232-576
Cow position: chr19:4387952-4388284 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 234
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 161, 17

Conread position: 232-576
Cow position: chr19:5731871-5732206 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 17

Conread position: 232-576
Cow position: chr19:7490459-7490802 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr19:12775481-12775827 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 260
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-576
Cow position: chr19:21338485-21338129 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-576
Cow position: chr19:28579332-28578994 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 245
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 160, 17

Conread position: 232-576
Cow position: chr19:39183181-39182835 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 8

Conread position: 232-576
Cow position: chr19:39392870-39393214 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr19:40834903-40834560 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 17

Conread position: 232-576
Cow position: chr19:40850128-40849783 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr19:42297768-42297412 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 240
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 115, 17

Conread position: 233-575
Cow position: chr19:36149006-36149364 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 17

Conread position: 235-370
Cow position: chr19:36418331-36418465 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 101
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 235-481
Cow position: chr19:37683302-37683540 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 177
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 157, 14

Conread position: 235-509
Cow position: chr19:24727315-24727043 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 189
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 172, 15

Conread position: 235-556
Cow position: chr19:9705820-9705503 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 224
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 155, 14

Conread position: 235-563
Cow position: chr19:436976-436647 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 51, 14

Conread position: 235-564
Cow position: chr19:42581923-42581596 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 239
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 158, 14

Conread position: 235-576
Cow position: chr19:39666187-39665847 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 14

Conread position: 236-463
Cow position: chr19:19177064-19176839 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 165
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 67, 13

Conread position: 236-553
Cow position: chr19:41787351-41787041 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 214
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 226, 118

Conread position: 236-556
Cow position: chr19:38810793-38811095 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 217
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 157, 13

Conread position: 236-571
Cow position: chr19:5248426-5248092 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 229
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 158, 269

Conread position: 237-391
Cow position: chr19:27608243-27608093 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 12, 0

Conread position: 237-575
Cow position: chr19:32138557-32138218 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 236

Conread position: 237-575
Cow position: chr19:38559921-38559585 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 85, 12

Conread position: 238-564
Cow position: chr19:32708539-32708864 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 13

Conread position: 238-576
Cow position: chr19:4553241-4552920 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 11, 0

Conread position: 239-575
Cow position: chr19:3175845-3176173 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 229
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 157, 10

Conread position: 241-566
Cow position: chr19:28718887-28719208 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 84

Conread position: 246-472
Cow position: chr19:5717266-5717042 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 175
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 144, 34

Conread position: 246-575
Cow position: chr19:40716-41036 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 161, 84

Conread position: 247-576
Cow position: chr19:3142007-3142345 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 220
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 144, 91

Conread position: 247-576
Cow position: chr19:33875788-33876119 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 83

Conread position: 248-534
Cow position: chr19:23865795-23865508 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 9, 52

Conread position: 248-575
Cow position: chr19:3586766-3586439 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 219
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 146, 62

Conread position: 248-575
Cow position: chr19:28595758-28596070 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 232
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 266, 99

Conread position: 249-558
Cow position: chr19:34657144-34656852 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 211
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 61, 0

Conread position: 249-564
Cow position: chr19:159490-159163 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 220
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 45, 0

Conread position: 249-566
Cow position: chr19:5782141-5781836 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 224
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 158, 108

Conread position: 249-575
Cow position: chr19:33905445-33905763 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 141, 178

Conread position: 252-574
Cow position: chr19:24437850-24437528 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 226
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 137, 58

Conread position: 255-575
Cow position: chr19:28795947-28795627 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 7, 99

Conread position: 256-563
Cow position: chr19:44755650-44755353 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 210
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 47, 32

Conread position: 257-562
Cow position: chr19:1586871-1586565 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 215
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 133, 120

Conread position: 268-576
Cow position: chr19:25378329-25378640 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 55, 114

Conread position: 270-565
Cow position: chr19:36999952-36999672 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 200
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 123, 144

Conread position: 278-553
Cow position: chr19:44032869-44033146 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 115, 43

Conread position: 278-563
Cow position: chr19:2736193-2736480 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 191
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 114, 14

Conread position: 285-516
Cow position: chr19:30475135-30474903 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 163
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 107, 25

Conread position: 285-564
Cow position: chr19:3402583-3402308 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 194
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 123, 16

Conread position: 287-575
Cow position: chr19:18447352-18447636 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 199
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 103, 67

Conread position: 305-564
Cow position: chr19:39345504-39345250 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 175
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 92, 16

Conread position: 321-575
Cow position: chr19:28328824-28329062 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 187
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 75, 162

Conread position: 326-536
Cow position: chr19:19388271-19388480 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 70, 183

Conread position: 329-563
Cow position: chr19:18359849-18359614 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 165
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 23, 61

Conread position: 330-564
Cow position: chr19:30757675-30757909 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 164
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 63, 14

Conread position: 365-566
Cow position: chr19:475008-474804 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 146
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 31, 0

Conread position: 365-575
Cow position: chr19:5901061-5901271 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 148
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 31, 97

Conread position: 367-563
Cow position: chr19:39749720-39749915 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 141
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 29, 159

Conread position: 367-575
Cow position: chr19:40017081-40016877 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 145
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 49

Conread position: 368-566
Cow position: chr19:55165564-55165363 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 139
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 369-575
Cow position: chr19:28741386-28741180 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 146
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 42, 192

Conread position: 374-566
Cow position: chr19:22390959-22390764 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 140
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 22, 0

Conread position: 386-576
Cow position: chr19:890685-890494 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 135
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 21, 0

Conread position: 389-576
Cow position: chr19:44396099-44395909 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 400-575
Cow position: chr19:55694182-55694006 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 14, 93

Conread position: 403-573
Cow position: chr19:55842318-55842483 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 121
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 14, 0

Conread position: 404-559
Cow position: chr19:35612295-35612141 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 115, 126

Conread position: 404-576
Cow position: chr19:6554510-6554680 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 123
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 109, 0

Conread position: 429-576
Cow position: chr19:2270742-2270595 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 108
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.