Cow genome map

Conread name: Ss1.1-Utr2-C0001815_L04.5

Conread position: 231-516
Cow position: chr20:22396664-22396396 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 194
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 117, 18

Conread position: 231-575
Cow position: chr20:16177442-16177099 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 236
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 101, 74

Conread position: 231-576
Cow position: chr20:23801210-23801557 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 18

Conread position: 231-576
Cow position: chr20:23805558-23805212 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 18

Conread position: 232-433
Cow position: chr20:15602442-15602239 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 151
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 118, 17

Conread position: 232-457
Cow position: chr20:6014566-6014327 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 169
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 76, 17

Conread position: 232-465
Cow position: chr20:28280135-28280367 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 157
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 113, 17

Conread position: 232-478
Cow position: chr20:39881661-39881909 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 177
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 46, 17

Conread position: 232-481
Cow position: chr20:28561592-28561343 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 176
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 157, 17

Conread position: 232-481
Cow position: chr20:32155021-32154766 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 179
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 77, 17

Conread position: 232-501
Cow position: chr20:29757958-29757687 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 197
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 158, 17

Conread position: 232-535
Cow position: chr20:23899708-23900012 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-557
Cow position: chr20:23467344-23467018 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-563
Cow position: chr20:5537252-5537581 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 175, 19

Conread position: 232-563
Cow position: chr20:7598532-7598210 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 228
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 158, 17

Conread position: 232-563
Cow position: chr20:10867465-10867132 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 170, 17

Conread position: 232-563
Cow position: chr20:27345626-27345314 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 227
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 18, 0

Conread position: 232-563
Cow position: chr20:28163368-28163697 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 232-563
Cow position: chr20:28293649-28293971 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 231
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 33, 17

Conread position: 232-564
Cow position: chr20:19424377-19424690 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 229
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 176, 17

Conread position: 232-565
Cow position: chr20:28959234-28958904 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 231
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 170, 18

Conread position: 232-566
Cow position: chr20:752467-752803 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-566
Cow position: chr20:825102-825435 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 233
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr20:18093865-18093531 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr20:21718885-21719224 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 17

Conread position: 232-566
Cow position: chr20:30385905-30385593 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 233
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 176, 17

Conread position: 232-566
Cow position: chr20:30430594-30430927 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-574
Cow position: chr20:8351013-8350683 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 232
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 161, 10

Conread position: 232-575
Cow position: chr20:8971559-8971227 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 238
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 17, 0

Conread position: 232-575
Cow position: chr20:19440238-19440579 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-575
Cow position: chr20:28445024-28444683 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-575
Cow position: chr20:34459984-34459644 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-576
Cow position: chr20:10922599-10922253 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 19

Conread position: 232-576
Cow position: chr20:12046835-12047180 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 17

Conread position: 232-576
Cow position: chr20:12436074-12435731 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr20:13765217-13765562 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-576
Cow position: chr20:15294299-15294633 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr20:27875804-27876147 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 10

Conread position: 232-576
Cow position: chr20:30687894-30688238 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 17

Conread position: 233-566
Cow position: chr20:30578212-30578543 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 16

Conread position: 235-401
Cow position: chr20:21916969-21917135 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 155, 14

Conread position: 235-553
Cow position: chr20:7513663-7513985 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 14

Conread position: 235-575
Cow position: chr20:10495322-10495652 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 227
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 124, 14

Conread position: 235-575
Cow position: chr20:22696698-22696382 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 225
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 161, 14

Conread position: 235-576
Cow position: chr20:20752512-20752180 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 231
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 158, 16

Conread position: 235-576
Cow position: chr20:21396854-21397188 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 14

Conread position: 235-576
Cow position: chr20:25332612-25332277 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 14

Conread position: 235-576
Cow position: chr20:25846291-25845955 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 14

Conread position: 235-576
Cow position: chr20:35144557-35144218 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 236-411
Cow position: chr20:19342138-19342313 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 128
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 154, 13

Conread position: 236-553
Cow position: chr20:13500628-13500938 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 218
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 77, 13

Conread position: 236-560
Cow position: chr20:13654952-13654641 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 223
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 137, 15

Conread position: 236-561
Cow position: chr20:14868041-14867732 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 228
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 172, 13

Conread position: 236-562
Cow position: chr20:35019249-35019573 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 157, 13

Conread position: 236-576
Cow position: chr20:5076331-5076666 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 237
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 154, 13

Conread position: 236-576
Cow position: chr20:7569763-7569433 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 225
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 136, 13

Conread position: 237-575
Cow position: chr20:24541750-24542090 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 12

Conread position: 237-576
Cow position: chr20:3307181-3307513 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 168, 12

Conread position: 244-564
Cow position: chr20:6475867-6476184 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 224
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 149, 57

Conread position: 246-492
Cow position: chr20:14748278-14748516 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 172
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 140, 106

Conread position: 246-575
Cow position: chr20:20440617-20440287 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 0

Conread position: 247-564
Cow position: chr20:35160244-35159927 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 83

Conread position: 247-566
Cow position: chr20:870668-870351 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 131, 20

Conread position: 247-566
Cow position: chr20:18355564-18355886 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 149, 0

Conread position: 247-575
Cow position: chr20:31747630-31747946 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 218
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 243, 69

Conread position: 247-576
Cow position: chr20:17659409-17659081 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 92

Conread position: 248-576
Cow position: chr20:15095563-15095236 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 229
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 148, 76

Conread position: 249-564
Cow position: chr20:35844974-35844660 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 141, 125

Conread position: 250-564
Cow position: chr20:28101665-28101976 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 222
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 210, 97

Conread position: 252-481
Cow position: chr20:33598772-33599004 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 126, 139

Conread position: 253-496
Cow position: chr20:8890109-8890351 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 163
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 12, 61

Conread position: 258-472
Cow position: chr20:35131235-35131461 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 160
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 135, 0

Conread position: 258-576
Cow position: chr20:12568966-12568646 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 72, 83

Conread position: 258-576
Cow position: chr20:20185103-20185412 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 133, 47

Conread position: 259-529
Cow position: chr20:20388957-20388687 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 183
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 74, 68

Conread position: 263-391
Cow position: chr20:8200705-8200577 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 96
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 263-575
Cow position: chr20:19844144-19844449 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 133, 47

Conread position: 277-576
Cow position: chr20:28724134-28724422 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 204
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 51, 27

Conread position: 278-496
Cow position: chr20:32350917-32351132 (view UCSC Genome Browser custom track)
Alignm length: 222
Alignm identity: 153
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 112, 159

Conread position: 278-575
Cow position: chr20:37582452-37582737 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 210
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 19, 0

Conread position: 282-473
Cow position: chr20:20491720-20491914 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 133
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 111, 138

Conread position: 292-575
Cow position: chr20:5226164-5225890 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 25, 101

Conread position: 294-566
Cow position: chr20:16560161-16559886 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 198
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 102, 0

Conread position: 294-575
Cow position: chr20:6136608-6136325 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 200
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 96, 177

Conread position: 305-572
Cow position: chr20:30461656-30461388 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 86, 182

Conread position: 306-566
Cow position: chr20:16105827-16106087 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 183
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 90, 41

Conread position: 306-566
Cow position: chr20:39233622-39233886 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 191
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 17, 0

Conread position: 310-575
Cow position: chr20:29313216-29313487 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 179
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 80, 201

Conread position: 331-566
Cow position: chr20:5936575-5936337 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 165
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 62, 119

Conread position: 333-575
Cow position: chr20:4736895-4736658 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 57, 92

Conread position: 337-558
Cow position: chr20:19365893-19365670 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 148
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 74, 0

Conread position: 341-556
Cow position: chr20:12693468-12693688 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 150
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 365-566
Cow position: chr20:3809318-3809114 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 148
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 31, 0

Conread position: 365-575
Cow position: chr20:24568818-24568605 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 151
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 28, 0

Conread position: 372-566
Cow position: chr20:29053801-29053996 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 150
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 21, 102

Conread position: 380-575
Cow position: chr20:14757789-14757591 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 144
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 13, 106

Conread position: 401-575
Cow position: chr20:7811339-7811168 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 124
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 8, 111

Conread position: 407-575
Cow position: chr20:27443503-27443335 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 119
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 112, 60

Conread position: 410-566
Cow position: chr20:8200716-8200872 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 115
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 419-572
Cow position: chr20:11902695-11902543 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 112
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 31, 0

Conread position: 421-566
Cow position: chr20:38956648-38956793 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 421-575
Cow position: chr20:10037296-10037141 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 113
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 98, 39

Conread position: 422-566
Cow position: chr20:38748077-38747934 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 422-575
Cow position: chr20:2180240-2180087 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.