Cow genome map

Conread name: Ss1.1-Utr2-C0001815_L04.5

Conread position: 214-560
Cow position: chr23:1339541-1339194 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 239
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 24, 17

Conread position: 231-391
Cow position: chr23:7357486-7357642 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 7, 0

Conread position: 232-350
Cow position: chr23:21792216-21792099 (view UCSC Genome Browser custom track)
Alignm length: 119
Alignm identity: 92
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 17, 0

Conread position: 232-428
Cow position: chr23:1114627-1114434 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 158, 17

Conread position: 232-432
Cow position: chr23:7043663-7043463 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 150
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 175, 17

Conread position: 232-445
Cow position: chr23:6221894-6222102 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 146
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 173, 17

Conread position: 232-463
Cow position: chr23:37652167-37652399 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 166
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 157, 17

Conread position: 232-471
Cow position: chr23:528328-528569 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 178
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 158, 17

Conread position: 232-481
Cow position: chr23:19441610-19441363 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 69, 17

Conread position: 232-541
Cow position: chr23:1958418-1958726 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-553
Cow position: chr23:15179323-15179643 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-555
Cow position: chr23:8389970-8389645 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 221
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 189, 17

Conread position: 232-556
Cow position: chr23:11781049-11781374 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-558
Cow position: chr23:15527842-15528167 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-560
Cow position: chr23:37129571-37129239 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 219
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 142, 18

Conread position: 232-562
Cow position: chr23:19491810-19492143 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-563
Cow position: chr23:2439053-2438721 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 231
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 161, 10

Conread position: 232-563
Cow position: chr23:14960695-14960365 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-563
Cow position: chr23:16056016-16056326 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 230
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 175, 17

Conread position: 232-563
Cow position: chr23:16612540-16612214 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 17

Conread position: 232-564
Cow position: chr23:5872305-5871977 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 230
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 160, 17

Conread position: 232-564
Cow position: chr23:32350505-32350176 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 140
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 158, 17

Conread position: 232-564
Cow position: chr23:35925767-35926081 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 227
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 190, 17

Conread position: 232-564
Cow position: chr23:41142598-41142927 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr23:943230-943566 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr23:3452482-3452170 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 228
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 137, 19

Conread position: 232-566
Cow position: chr23:7313840-7313504 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-566
Cow position: chr23:15568671-15568334 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr23:25350609-25350945 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr23:36097072-36097408 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-567
Cow position: chr23:19166053-19166384 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 243
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 164, 17

Conread position: 232-575
Cow position: chr23:608972-609323 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 250
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 118, 17

Conread position: 232-575
Cow position: chr23:3708660-3708999 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 164, 17

Conread position: 232-575
Cow position: chr23:28220962-28221304 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 17

Conread position: 232-576
Cow position: chr23:1011580-1011231 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 238
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 124, 17

Conread position: 232-576
Cow position: chr23:2411377-2411038 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr23:2792506-2792166 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 241
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr23:3878827-3878493 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 171, 17

Conread position: 232-576
Cow position: chr23:4308925-4308578 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 232-576
Cow position: chr23:4435913-4436254 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 241
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 158, 17

Conread position: 232-576
Cow position: chr23:4890946-4891290 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 17

Conread position: 232-576
Cow position: chr23:29442838-29442499 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 230
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr23:29448958-29448621 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 236
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 161, 17

Conread position: 232-576
Cow position: chr23:30212574-30212245 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 239
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 176, 18

Conread position: 232-576
Cow position: chr23:36029128-36028782 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr23:37200262-37199920 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr23:38583212-38583543 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 241
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 161, 17

Conread position: 235-376
Cow position: chr23:1204797-1204939 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 26

Conread position: 235-533
Cow position: chr23:11713603-11713303 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 7

Conread position: 235-558
Cow position: chr23:38579926-38580240 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 219
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 78, 14

Conread position: 235-563
Cow position: chr23:22145045-22144716 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 239
Alignm E-value: 0
Alignm gaps (pig, cow): 114, 14

Conread position: 235-564
Cow position: chr23:32008761-32009082 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 226
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 161, 15

Conread position: 235-575
Cow position: chr23:2321687-2321347 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 155, 14

Conread position: 235-575
Cow position: chr23:12079753-12080080 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 223
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 155, 16

Conread position: 235-576
Cow position: chr23:2760164-2760498 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 16

Conread position: 235-576
Cow position: chr23:4515796-4516139 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 236-434
Cow position: chr23:17845142-17845342 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 143
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 81, 13

Conread position: 236-481
Cow position: chr23:4266585-4266339 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 180
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 174, 13

Conread position: 236-576
Cow position: chr23:22169142-22169486 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 126, 13

Conread position: 238-562
Cow position: chr23:14971686-14971363 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 141, 11

Conread position: 246-561
Cow position: chr23:21773647-21773329 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 0

Conread position: 246-575
Cow position: chr23:14264615-14264945 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 150, 58

Conread position: 247-383
Cow position: chr23:4638342-4638206 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 101
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 247-391
Cow position: chr23:31165095-31165239 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 107
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 247-576
Cow position: chr23:5625299-5624980 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 254, 83

Conread position: 247-576
Cow position: chr23:16496980-16496670 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 224
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 161, 76

Conread position: 249-530
Cow position: chr23:18104736-18104456 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 185
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 144, 43

Conread position: 249-575
Cow position: chr23:8705131-8705458 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 231
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 68, 258

Conread position: 249-575
Cow position: chr23:20178295-20177980 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 218
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 147, 73

Conread position: 250-469
Cow position: chr23:11840604-11840820 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 148
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 106

Conread position: 250-575
Cow position: chr23:26418732-26419052 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 216
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 43, 48

Conread position: 251-563
Cow position: chr23:2024810-2024499 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 79

Conread position: 253-563
Cow position: chr23:15504306-15504598 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 65, 0

Conread position: 255-519
Cow position: chr23:1327105-1326851 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 180
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 59, 8

Conread position: 255-567
Cow position: chr23:23283783-23284086 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 127, 47

Conread position: 257-575
Cow position: chr23:15659271-15658960 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 227
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 91, 115

Conread position: 263-561
Cow position: chr23:7493092-7492792 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 206
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 80, 72

Conread position: 263-563
Cow position: chr23:20153934-20153636 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 215
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 133, 77

Conread position: 263-575
Cow position: chr23:1021636-1021328 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 212
Alignm E-value: 9e-34
Alignm gaps (pig, cow): 61, 16

Conread position: 263-576
Cow position: chr23:1799924-1800236 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 217
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 133, 81

Conread position: 266-575
Cow position: chr23:8289709-8290018 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 211
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 100, 75

Conread position: 277-457
Cow position: chr23:1249058-1249241 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 133
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 113, 0

Conread position: 281-575
Cow position: chr23:3145914-3146201 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 194
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 60, 47

Conread position: 284-575
Cow position: chr23:644408-644121 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 34, 43

Conread position: 289-566
Cow position: chr23:4080450-4080730 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 0

Conread position: 311-575
Cow position: chr23:7043472-7043210 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 177
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 79, 126

Conread position: 312-566
Cow position: chr23:19316816-19317073 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 186
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 84, 0

Conread position: 326-565
Cow position: chr23:26307382-26307627 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 171
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 23, 98

Conread position: 335-536
Cow position: chr23:4533244-4533039 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 61, 0

Conread position: 335-560
Cow position: chr23:1003326-1003100 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 61, 176

Conread position: 336-576
Cow position: chr23:2718984-2719214 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 160
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 341-563
Cow position: chr23:2586443-2586667 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 161
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 55, 177

Conread position: 341-563
Cow position: chr23:22989515-22989290 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 160
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 55, 0

Conread position: 341-576
Cow position: chr23:31892417-31892646 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 161
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 52, 20

Conread position: 348-567
Cow position: chr23:15350592-15350814 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 48, 6

Conread position: 365-566
Cow position: chr23:3417944-3417742 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 31, 112

Conread position: 395-576
Cow position: chr23:15216419-15216237 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 405-563
Cow position: chr23:17350398-17350240 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 408-566
Cow position: chr23:21009177-21009019 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 416-576
Cow position: chr23:4637885-4637725 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.