Cow genome map

Conread name: Ss1.1-Utr2-C0001815_L04.5

Conread position: 231-503
Cow position: chr25:33837462-33837736 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 189
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 157, 18

Conread position: 231-556
Cow position: chr25:34344662-34344335 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 18

Conread position: 232-383
Cow position: chr25:15617071-15617221 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 17, 0

Conread position: 232-391
Cow position: chr25:9394247-9394412 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 121
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 108, 17

Conread position: 232-411
Cow position: chr25:21966288-21966464 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 126
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 158, 17

Conread position: 232-423
Cow position: chr25:26354645-26354838 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 98, 18

Conread position: 232-434
Cow position: chr25:12940130-12939929 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 158, 17

Conread position: 232-481
Cow position: chr25:34673958-34674206 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 186
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 105, 18

Conread position: 232-525
Cow position: chr25:12700019-12700307 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 212
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 164, 17

Conread position: 232-536
Cow position: chr25:29359073-29359376 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-536
Cow position: chr25:34505772-34505467 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-561
Cow position: chr25:13352010-13352342 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-561
Cow position: chr25:37647475-37647806 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 219
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 52, 17

Conread position: 232-563
Cow position: chr25:24656392-24656059 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-563
Cow position: chr25:26900580-26900910 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-564
Cow position: chr25:26929904-26930244 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 131, 17

Conread position: 232-565
Cow position: chr25:13793174-13792838 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 217
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 92, 17

Conread position: 232-566
Cow position: chr25:11042664-11042998 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 236
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-566
Cow position: chr25:14537620-14537285 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 11

Conread position: 232-566
Cow position: chr25:27020291-27019957 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 18

Conread position: 232-566
Cow position: chr25:29803735-29803402 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 233
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 164, 17

Conread position: 232-566
Cow position: chr25:35552731-35553067 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-575
Cow position: chr25:11664713-11665058 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 17

Conread position: 232-575
Cow position: chr25:15366208-15366533 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 231
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 247, 17

Conread position: 232-575
Cow position: chr25:18191344-18191003 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 17

Conread position: 232-575
Cow position: chr25:19338274-19337936 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 17

Conread position: 232-575
Cow position: chr25:32448193-32448538 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 19

Conread position: 232-575
Cow position: chr25:33261512-33261845 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 236
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 45, 17

Conread position: 232-575
Cow position: chr25:34510702-34510361 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 249
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr25:10135749-10136083 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 227
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 158, 47

Conread position: 232-576
Cow position: chr25:13784894-13785239 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr25:13959121-13959457 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 242
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 164, 17

Conread position: 232-576
Cow position: chr25:18887431-18887082 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 98, 17

Conread position: 232-576
Cow position: chr25:26281066-26281409 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 10

Conread position: 232-576
Cow position: chr25:28861919-28862256 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 232-576
Cow position: chr25:34667682-34667346 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 157, 17

Conread position: 235-560
Cow position: chr25:15283276-15283609 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 224
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 68, 15

Conread position: 235-560
Cow position: chr25:19409357-19409679 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 228
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 158, 14

Conread position: 235-561
Cow position: chr25:30129478-30129148 (view UCSC Genome Browser custom track)
Alignm length: 338
Alignm identity: 234
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 161, 14

Conread position: 235-565
Cow position: chr25:38398499-38398830 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 14

Conread position: 235-575
Cow position: chr25:1077880-1078212 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 239
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 182, 14

Conread position: 235-575
Cow position: chr25:20773288-20772946 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 162, 14

Conread position: 235-575
Cow position: chr25:35562462-35562128 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 245
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 14

Conread position: 235-576
Cow position: chr25:16448380-16448059 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 223
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 155, 14

Conread position: 235-576
Cow position: chr25:17656702-17657032 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 235
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 174, 14

Conread position: 235-576
Cow position: chr25:18422770-18423107 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 233
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 174, 160

Conread position: 236-444
Cow position: chr25:23999768-23999559 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 152
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 171, 13

Conread position: 236-477
Cow position: chr25:40431254-40431028 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 172
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 194, 8

Conread position: 236-566
Cow position: chr25:20099685-20100014 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 238
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 154, 15

Conread position: 236-566
Cow position: chr25:21546255-21546576 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 224
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 154, 14

Conread position: 236-575
Cow position: chr25:19922863-19923201 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 13

Conread position: 236-576
Cow position: chr25:16924083-16923748 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 232
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 56, 13

Conread position: 237-470
Cow position: chr25:12173070-12172836 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 156
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 153, 13

Conread position: 238-566
Cow position: chr25:32578613-32578282 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 0

Conread position: 238-575
Cow position: chr25:10635218-10634880 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 11

Conread position: 239-576
Cow position: chr25:18489068-18489409 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 230
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 75, 122

Conread position: 243-398
Cow position: chr25:14962851-14962701 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 118
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 22, 0

Conread position: 246-472
Cow position: chr25:40138744-40138519 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 151
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 161, 146

Conread position: 246-560
Cow position: chr25:24206354-24206045 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 214
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 162, 109

Conread position: 248-477
Cow position: chr25:13771215-13770980 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 176
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 0

Conread position: 248-561
Cow position: chr25:23846752-23846449 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 206
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 151, 20

Conread position: 249-564
Cow position: chr25:41106502-41106824 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 218
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 135, 90

Conread position: 249-576
Cow position: chr25:20631952-20632279 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 81

Conread position: 250-564
Cow position: chr25:17555404-17555095 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 142, 49

Conread position: 250-565
Cow position: chr25:18324516-18324213 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 223
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 100, 8

Conread position: 251-525
Cow position: chr25:12864436-12864703 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 190
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 174, 214

Conread position: 251-566
Cow position: chr25:49262-49573 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 220
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 75, 103

Conread position: 252-563
Cow position: chr25:34495077-34494773 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 223
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 138, 45

Conread position: 255-576
Cow position: chr25:11828646-11828339 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 152, 47

Conread position: 255-576
Cow position: chr25:19017322-19017004 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 223
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 138, 72

Conread position: 256-564
Cow position: chr25:23360251-23360564 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 217
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 67, 201

Conread position: 258-576
Cow position: chr25:35627136-35626824 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 221
Alignm E-value: 8e-33
Alignm gaps (pig, cow): 132, 43

Conread position: 265-543
Cow position: chr25:36814611-36814338 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 187
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 125, 71

Conread position: 265-575
Cow position: chr25:26455783-26456082 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 229
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 132, 58

Conread position: 273-575
Cow position: chr25:12835485-12835181 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 0

Conread position: 277-560
Cow position: chr25:21146366-21146671 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 113, 295

Conread position: 305-575
Cow position: chr25:17586900-17586633 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 191
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 91, 25

Conread position: 305-575
Cow position: chr25:19106603-19106872 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 198
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 88, 41

Conread position: 319-575
Cow position: chr25:35086164-35085912 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 176
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 59, 34

Conread position: 322-575
Cow position: chr25:24732651-24732402 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 183
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 68, 56

Conread position: 333-576
Cow position: chr25:22150215-22150461 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 172
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 11, 174

Conread position: 335-538
Cow position: chr25:41407766-41407966 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 139
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 75, 18

Conread position: 335-566
Cow position: chr25:35648837-35648603 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 169
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 61, 0

Conread position: 338-576
Cow position: chr25:31513144-31513384 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 55, 188

Conread position: 341-563
Cow position: chr25:18179152-18179380 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 67, 35

Conread position: 360-563
Cow position: chr25:41099015-41098810 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 144
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 191

Conread position: 360-566
Cow position: chr25:24988730-24988939 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 145
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 33, 73

Conread position: 367-576
Cow position: chr25:35756072-35755856 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 16, 0

Conread position: 400-575
Cow position: chr25:32898381-32898550 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 406-575
Cow position: chr25:9645984-9646154 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 128
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 50, 0

Conread position: 408-576
Cow position: chr25:35568663-35568496 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 120
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 28, 0

Conread position: 415-553
Cow position: chr25:17547263-17547129 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 104
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 24, 0

Conread position: 431-566
Cow position: chr25:14962692-14962560 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 104
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 101, 0

Show alignments to all cow chromosomes.