Cow genome map
| Conread name: | Ss1.1-Utr2-C0001815_L04.5 |
| Conread position: | 230-575 |
| Cow position: | chr26:27251886-27252236 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 232-411 |
| Cow position: | chr26:35335898-35335722 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 232-442 |
| Cow position: | chr26:615956-615745 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 120, 17 |
| Conread position: | 232-481 |
| Cow position: | chr26:30754092-30753841 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 185 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-528 |
| Cow position: | chr26:8281375-8281099 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 170, 17 |
| Conread position: | 232-546 |
| Cow position: | chr26:15551856-15551546 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 227 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-559 |
| Cow position: | chr26:3028331-3027998 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 232-560 |
| Cow position: | chr26:34824564-34824251 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 156, 17 |
| Conread position: | 232-563 |
| Cow position: | chr26:17430207-17429874 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 17 |
| Conread position: | 232-564 |
| Cow position: | chr26:33877778-33878103 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 232-566 |
| Cow position: | chr26:366928-367264 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 17 |
| Conread position: | 232-566 |
| Cow position: | chr26:898700-899036 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 232-566 |
| Cow position: | chr26:1349331-1348995 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 232-566 |
| Cow position: | chr26:2418100-2417764 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 232-566 |
| Cow position: | chr26:8884148-8884480 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 10 |
| Conread position: | 232-566 |
| Cow position: | chr26:18856421-18856752 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 119, 17 |
| Conread position: | 232-566 |
| Cow position: | chr26:21824352-21824025 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-566 |
| Cow position: | chr26:28707763-28707428 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 18 |
| Conread position: | 232-566 |
| Cow position: | chr26:30785069-30785406 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 146, 10 |
| Conread position: | 232-566 |
| Cow position: | chr26:35122947-35122611 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 18 |
| Conread position: | 232-566 |
| Cow position: | chr26:35561503-35561837 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-568 |
| Cow position: | chr26:9114210-9114548 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 206 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-575 |
| Cow position: | chr26:23888711-23889052 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-576 |
| Cow position: | chr26:14365924-14365589 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 241 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 160, 17 |
| Conread position: | 232-576 |
| Cow position: | chr26:14896266-14896612 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 10 |
| Conread position: | 232-576 |
| Cow position: | chr26:17326465-17326807 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 17 |
| Conread position: | 232-576 |
| Cow position: | chr26:17394586-17394250 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 232-576 |
| Cow position: | chr26:19349195-19348853 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 19 |
| Conread position: | 232-576 |
| Cow position: | chr26:21416576-21416229 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 112, 19 |
| Conread position: | 232-576 |
| Cow position: | chr26:30587050-30586704 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 17 |
| Conread position: | 235-560 |
| Cow position: | chr26:6497302-6496987 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 15 |
| Conread position: | 235-563 |
| Cow position: | chr26:6425297-6425627 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 14 |
| Conread position: | 235-563 |
| Cow position: | chr26:9483384-9483709 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 173, 14 |
| Conread position: | 235-563 |
| Cow position: | chr26:32933215-32932889 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 14 |
| Conread position: | 235-564 |
| Cow position: | chr26:32846470-32846145 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 231 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 158, 14 |
| Conread position: | 235-575 |
| Cow position: | chr26:8872143-8872487 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 235-575 |
| Cow position: | chr26:34013998-34014336 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 161, 14 |
| Conread position: | 235-576 |
| Cow position: | chr26:5677460-5677800 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 14 |
| Conread position: | 235-576 |
| Cow position: | chr26:6845212-6844871 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 14 |
| Conread position: | 236-477 |
| Cow position: | chr26:11265222-11265452 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 176 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 6, 89 |
| Conread position: | 236-575 |
| Cow position: | chr26:2349870-2349531 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 13 |
| Conread position: | 236-576 |
| Cow position: | chr26:19012241-19012576 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 14 |
| Conread position: | 236-576 |
| Cow position: | chr26:31792806-31793150 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 77 |
| Conread position: | 238-526 |
| Cow position: | chr26:6792517-6792798 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 152, 11 |
| Conread position: | 246-564 |
| Cow position: | chr26:18035226-18035543 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 93 |
| Conread position: | 246-566 |
| Cow position: | chr26:10459373-10459686 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 229 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 168, 45 |
| Conread position: | 247-561 |
| Cow position: | chr26:8878305-8877989 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 143, 57 |
| Conread position: | 247-563 |
| Cow position: | chr26:26306941-26306640 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 62, 109 |
| Conread position: | 247-571 |
| Cow position: | chr26:34553760-34553442 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 223 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 86, 71 |
| Conread position: | 248-481 |
| Cow position: | chr26:3703349-3703584 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 133, 140 |
| Conread position: | 248-563 |
| Cow position: | chr26:18957795-18957492 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 142, 62 |
| Conread position: | 249-553 |
| Cow position: | chr26:10505120-10505429 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 108, 61 |
| Conread position: | 249-575 |
| Cow position: | chr26:32051431-32051122 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 141, 108 |
| Conread position: | 250-566 |
| Cow position: | chr26:11149062-11149388 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 58, 229 |
| Conread position: | 255-566 |
| Cow position: | chr26:9839121-9838818 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 223 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 154, 47 |
| Conread position: | 257-563 |
| Cow position: | chr26:12667787-12668089 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 133, 231 |
| Conread position: | 257-572 |
| Cow position: | chr26:27139243-27138934 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 230 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 136, 21 |
| Conread position: | 257-575 |
| Cow position: | chr26:8087401-8087712 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 225 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 132, 233 |
| Conread position: | 258-575 |
| Cow position: | chr26:12586207-12585896 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 89 |
| Conread position: | 263-575 |
| Cow position: | chr26:17995043-17994742 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 215 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 126, 63 |
| Conread position: | 265-566 |
| Cow position: | chr26:13023004-13022703 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 131, 82 |
| Conread position: | 275-448 |
| Cow position: | chr26:2975671-2975847 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 115, 0 |
| Conread position: | 290-563 |
| Cow position: | chr26:35072569-35072839 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 110, 19 |
| Conread position: | 296-562 |
| Cow position: | chr26:28720691-28720961 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 97, 0 |
| Conread position: | 302-566 |
| Cow position: | chr26:4210823-4210571 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 183 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 91, 52 |
| Conread position: | 302-575 |
| Cow position: | chr26:35564021-35563755 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 305-575 |
| Cow position: | chr26:35562766-35562503 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 102, 13 |
| Conread position: | 306-552 |
| Cow position: | chr26:2245840-2245581 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 172 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 314-566 |
| Cow position: | chr26:7736024-7736277 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 184 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 82, 152 |
| Conread position: | 320-566 |
| Cow position: | chr26:4440804-4441053 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 335-566 |
| Cow position: | chr26:4122065-4122299 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 61, 0 |
| Conread position: | 335-575 |
| Cow position: | chr26:2200936-2201173 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 61, 81 |
| Conread position: | 335-576 |
| Cow position: | chr26:19470063-19469824 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 167 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 58, 83 |
| Conread position: | 336-575 |
| Cow position: | chr26:21011548-21011782 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 344-565 |
| Cow position: | chr26:4776801-4777023 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 173 |
| Conread position: | 386-576 |
| Cow position: | chr26:27988361-27988169 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 6, 84 |
| Conread position: | 387-566 |
| Cow position: | chr26:3226436-3226614 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 389-565 |
| Cow position: | chr26:25341442-25341271 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 18, 100 |
| Conread position: | 395-576 |
| Cow position: | chr26:4601727-4601547 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 422-576 |
| Cow position: | chr26:6079676-6079522 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 439-566 |
| Cow position: | chr26:8317438-8317311 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.